Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [carbon source]	Term Source REF	Term Accession Number	Characteristics [genotype]	Characteristics [organism]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CARBON SOURCE]	Term Source REF	Term Accession Number	FactorValue [GENOTYPE]	FactorValue [ORGANISM]
GSM1078941 1	multiplexed: no	hyphae	Nc Pc2 Sucrose	sucrose	EFO	http://purl.obolibrary.org/obo/CHEBI_17992	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078941 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078941	SRX226259	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676535	SRR676535	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676535/SRR676535.fastq.gz	GSM1078941_Pc2_4S.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	sucrose	EFO	http://purl.obolibrary.org/obo/CHEBI_17992	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A
GSM1078940 1	multiplexed: yes multiplexed: TGACCA	hyphae	Nc Pc2 No Carbon #3	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078940 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078940	SRX226258	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676534	SRR676534	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676534/SRR676534.fastq.gz	GSM1078940_Pc2_4N3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A
GSM1078939 1	multiplexed: yes multiplexed: CGATGT	hyphae	Nc Pc2 No Carbon #2	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078939 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078939	SRX226257	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676533	SRR676533	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676533/SRR676533.fastq.gz	GSM1078939_Pc2_4N2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A
GSM1078938 1	multiplexed: no	hyphae	Nc Pc2 No Carbon #1	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078938 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078938	SRX226256	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676532	SRR676532	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676532/SRR676532.fastq.gz	GSM1078938_Pc2_4N1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	Pc2 (∆clr-2 native locus, clr-2 under ccg-1 promoter at the his-3 locus)	Neurospora crassa OR74A
GSM1078937 1	multiplexed: yes multiplexed: GTGAAA	hyphae	An ∆clrB Avicel #3	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078937 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078937	SRX226255	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676531	SRR676531	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676531/SRR676531.fastq.gz	GSM1078937_DclrB-Av6h-3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4
GSM1078936 1	multiplexed: yes multiplexed: GTGAAA	hyphae	An ∆clrB Avicel #2	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078936 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078936	SRX226254	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676530	SRR676530	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676530/SRR676530.fastq.gz	GSM1078936_DclrB-Av6h-2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4
GSM1078935 1	multiplexed: yes multiplexed: CCGTCC	hyphae	An ∆clrB Avicel #1	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078935 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078935	SRX226253	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676529	SRR676529	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676529/SRR676529.fastq.gz	GSM1078935_DclrB-Av6h-1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	∆clrB (deletion of AN3369)	Aspergillus nidulans FGSC A4
GSM1078934 1	multiplexed: yes multiplexed: CTTGTA	hyphae	Nc ∆clr-2 Avicel #3	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078934 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078934	SRX226252	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676528	SRR676528	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676528/SRR676528.fastq.gz	GSM1078934_Dclr2_4A3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A
GSM1078933 1	multiplexed: yes multiplexed: CAGATC	hyphae	Nc ∆clr-2 Avicel #2	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078933 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078933	SRX226251	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676527	SRR676527	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676527/SRR676527.fastq.gz	GSM1078933_Dclr2_4A2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A
GSM1078932 1	multiplexed: no	hyphae	Nc ∆clr-2 Avicel #1	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078932 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078932	SRX226250	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676526	SRR676526	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676526/SRR676526.fastq.gz	GSM1078932_Dclr2_4A1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	FGSC 15834, ∆clr-2 (deletion of NCU08042)	Neurospora crassa OR74A
GSM1078931 1	multiplexed: yes multiplexed: ACAGTG	hyphae	An WT No Carbon #3	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078931 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078931	SRX226249	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676525	SRR676525	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676525/SRR676525.fastq.gz	GSM1078931_AnA4-NC6h-3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078930 1	multiplexed: yes multiplexed: CCGTCC	hyphae	An WT No Carbon #2	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078930 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078930	SRX226248	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676524	SRR676524	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676524/SRR676524.fastq.gz	GSM1078930_AnA4-NC6h-2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078929 1	multiplexed: yes multiplexed: CGATGT	hyphae	An WT No Carbon #1	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078929 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078929	SRX226247	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676523	SRR676523	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676523/SRR676523.fastq.gz	GSM1078929_AnA4-NC6h-1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078928 1	multiplexed: yes multiplexed: GTCCGC	hyphae	An WT Avicel #3	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078928 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078928	SRX226246	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676522	SRR676522	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676522/SRR676522.fastq.gz	GSM1078928_AnA4-Av6h-3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078927 1	multiplexed: yes multiplexed: NAGATC	hyphae	An WT Avicel #2	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078927 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078927	SRX226245	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676521	SRR676521	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676521/SRR676521.fastq.gz	GSM1078927_AnA4-Av6h-2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078926 1	multiplexed: yes multiplexed: GCCAAT	hyphae	An WT Avicel #1	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078926 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078926	SRX226244	Illumina HiSeq 2000 (Aspergillus nidulans FGSC A4)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676520	SRR676520	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676520/SRR676520.fastq.gz	GSM1078926_AnA4-Av6h-1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Aspergillus nidulans FGSC A4
GSM1078925 1	multiplexed: no	hyphae	Nc WT No Carbon #3	No Carbon	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078925 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078925	SRX226243	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676519	SRR676519	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676519/SRR676519.fastq.gz	GSM1078925_2489_4N3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Neurospora crassa OR74A
GSM1078924 1	multiplexed: no	hyphae	Nc WT No Carbon #2	No Carbon	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078924 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078924	SRX226242	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676518	SRR676518	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676518/SRR676518.fastq.gz	GSM1078924_2489_4N2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Neurospora crassa OR74A
GSM1078923 1	multiplexed: no	hyphae	Nc WT No Carbon #1	No Carbon	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078923 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078923	SRX226241	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676517	SRR676517	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676517/SRR676517.fastq.gz	GSM1078923_2489_4N1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	No Carbon	  	  	wildtype	Neurospora crassa OR74A
GSM1078922 1	multiplexed: no	hyphae	Nc WT Avicel #3	Avicel	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078922 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078922	SRX226240	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676516	SRR676516	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676516/SRR676516.fastq.gz	GSM1078922_2489_4A3.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Neurospora crassa OR74A
GSM1078921 1	multiplexed: no	hyphae	Nc WT Avicel #2	Avicel	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078921 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078921	SRX226239	Illumina HiSeq 2000 (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676515	SRR676515	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676515/SRR676515.fastq.gz	GSM1078921_2489_4A2.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Neurospora crassa OR74A
GSM1078920 1	multiplexed: no	hyphae	Nc WT Avicel #1	Avicel	  	  	wildtype	Neurospora crassa OR74A	P-GSE44100-1	ArrayExpress	P-GSE44100-2	ArrayExpress	GSM1078920 extract 1	Illumina Genome Analyzer IIx	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1078920	SRX226238	Illumina Genome Analyzer IIx (Neurospora crassa OR74A)	sequencing assay	P-GSE44100-3	ArrayExpress	SRR676514	SRR676514	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR676/SRR676514/SRR676514.fastq.gz	GSM1078920_2489_4A1.fpkm_tracking	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-44100/E-GEOD-44100.processed.1.zip	Avicel	  	  	wildtype	Neurospora crassa OR74A