Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Term Source REF	Term Accession Number	Characteristics [cell type]	Characteristics [genotype]	Characteristics [molecule subtype]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	FactorValue [GENOTYPE]
GSM1077268 1	43_Hela_sic23_3_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_43_Hela_sic23_3	HeLa si-C23	HeLa si-C23 3	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077268 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077268	SRX227016	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679327	SRR679327	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679327/SRR679327.fastq.gz	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)
GSM1077267 1	42_Hela_sic23_2_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_42_Hela_sic23_2	HeLa si-C23	HeLa si-C23 2	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077267 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077267	SRX227015	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679326	SRR679326	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679326/SRR679326.fastq.gz	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)
GSM1077266 1	41_Hela_sic23_1_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_41_Hela_sic23_1	HeLa si-C23	HeLa si-C23 1	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077266 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077266	SRX227014	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679325	SRR679325	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679325/SRR679325.fastq.gz	stably expressing double-strand (ds) interfering RNA against NCL (sh-NCL)
GSM1077265 1	40_Hela_ctr3_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_40_Hela_ctr3	HeLa Sh-Scr	HeLa Sh-Scr 3	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077265 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077265	SRX227013	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679324	SRR679324	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679324/SRR679324.fastq.gz	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)
GSM1077264 1	39_Hela_ctr2_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_39_Hela_ctr2	HeLa Sh-Scr	HeLa Sh-Scr 2	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077264 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077264	SRX227012	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679323	SRR679323	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679323/SRR679323.fastq.gz	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)
GSM1077263 1	38_Hela_ctr1_solid0379_20110818_FRAGBCKal5Fla6mirRNA_solid0379_20110818_FRAGBCKal5Fla6mirRNA_F3_38_Hela_ctr1	HeLa Sh-Scr	HeLa Sh-Scr 1	HeLa	EFO	EFO_0001185	cervical cancer cells	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)	small RNA	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	P-GSE44052-1	ArrayExpress	P-GSE44052-2	ArrayExpress	P-GSE44052-3	ArrayExpress	GSM1077263 extract 1	AB SOLiD 4 System	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1077263	SRX227011	AB SOLiD 4 System (Homo sapiens)	sequencing assay	P-GSE44052-4	ArrayExpress	SRR679322	SRR679322	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR679/SRR679322/SRR679322.fastq.gz	stably expressing double-strand (ds) interfering RNA against scrambled sequences (sh-Scr)