Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Characteristics [patient]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [patient]	FactorValue [time]
GSM1071665 1	Gene expression of patient 7 after neoadjuvant chemotherapy	7_after_R	7_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	7	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071665 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071665 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071665	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071665_BC36_ARN0020_s1h1_D09_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071665_sample_table.txt norm	GSM1071665_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	7	after neoadjuvant chemotherapy
GSM1071664 1	Gene expression of patient 7 before neoadjuvant chemotherapy	7_before_R	7_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	7	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071664 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071664 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071664	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071664_BC36_ARN0017_s1h1_A09_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071664_sample_table.txt norm	GSM1071664_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	7	before neoadjuvant chemotherapy
GSM1071663 1	Gene expression of patient 6 after neoadjuvant chemotherapy	6_after_R	6_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	6	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071663 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071663 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071663	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071663_BC36_ARN0018_s1h1_B09_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071663_sample_table.txt norm	GSM1071663_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	6	after neoadjuvant chemotherapy
GSM1071662 1	Gene expression of patient 6 before neoadjuvant chemotherapy	6_before_R	6_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	6	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071662 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071662 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071662	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071662_BC36_ARN0014_s1h1_F07_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071662_sample_table.txt norm	GSM1071662_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	6	before neoadjuvant chemotherapy
GSM1071661 1	Gene expression of patient 5 after neoadjuvant chemotherapy	5_after_R	5_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	5	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071661 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071661 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071661	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071661_BC36_ARN0015_s1h1_G07_hGene_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071661_sample_table.txt norm	GSM1071661_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	5	after neoadjuvant chemotherapy
GSM1071660 1	Gene expression of patient 5 before neoadjuvant chemotherapy	5_before_R	5_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	5	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071660 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071660 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071660	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071660_BC36_ARN0012_s1h1_D07_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071660_sample_table.txt norm	GSM1071660_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	5	before neoadjuvant chemotherapy
GSM1071659 1	Gene expression of patient 4 after neoadjuvant chemotherapy	4_after_R	4_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	4	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071659 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071659 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071659	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071659_BC36_ARN0019_s1h1_C09_hGene_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071659_sample_table.txt norm	GSM1071659_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	4	after neoadjuvant chemotherapy
GSM1071658 1	Gene expression of patient 4 before neoadjuvant chemotherapy	4_before_R	4_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	4	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071658 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071658 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071658	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071658_BC36_ARN0016_s1h1_H07_hGene_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071658_sample_table.txt norm	GSM1071658_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	4	before neoadjuvant chemotherapy
GSM1071657 1	Gene expression of patient 3 after neoadjuvant chemotherapy	3_after_R	3_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	3	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071657 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071657 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071657	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071657_BC36_ARN0013_s1h1_E07_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071657_sample_table.txt norm	GSM1071657_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	3	after neoadjuvant chemotherapy
GSM1071656 1	Gene expression of patient 3 before neoadjuvant chemotherapy	3_before_R	3_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	3	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071656 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071656 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071656	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071656_BC36_ARN0005_s1h1_E05_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071656_sample_table.txt norm	GSM1071656_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	3	before neoadjuvant chemotherapy
GSM1071655 1	Gene expression of patient 2 after neoadjuvant chemotherapy	2_after_R	2_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	2	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071655 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071655 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071655	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071655_BC36_ARN0008_s1h1_H05_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071655_sample_table.txt norm	GSM1071655_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	2	after neoadjuvant chemotherapy
GSM1071654 1	Gene expression of patient 2 before neoadjuvant chemotherapy	2_before_R	2_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	2	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071654 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071654 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071654	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071654_BC36_ARN0003_s1h1_C05_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071654_sample_table.txt norm	GSM1071654_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	2	before neoadjuvant chemotherapy
GSM1071653 1	Gene expression of patient 1 after neoadjuvant chemotherapy	1_after_R	1_after	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	1	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071653 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071653 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071653	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071653_BC36_ARN0007_s1h1_G05_hGene_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071653_sample_table.txt norm	GSM1071653_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	1	after neoadjuvant chemotherapy
GSM1071652 1	Gene expression of patient 1 before neoadjuvant chemotherapy	1_before_R	1_before	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	breast cancer tissue	1	P-GSE43816-2	ArrayExpress	P-GSE43816-3	ArrayExpress	GSM1071652 extract 1	total RNA	P-GSE43816-4	ArrayExpress	GSM1071652 LE 1	Biotin	P-GSE43816-5	ArrayExpress	GSM1071652	A-GEOD-11532	ArrayExpress	array assay	P-GSE43816-6	ArrayExpress	GSM1071652_BC36_ARN0001_s1h1_A05_hGene.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.raw.1.zip	P-GSE43816-1	ArrayExpress	GSM1071652_sample_table.txt norm	GSM1071652_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43816/E-GEOD-43816.processed.1.zip	1	before neoadjuvant chemotherapy