Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [background strain]	Term Source REF	Term Accession Number	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM1069578 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC PR8 infected rep3 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069578 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069578 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069578	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069578_SC145.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069578_sample_table.txt norm	GSM1069578_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069577 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC PR8 infected rep2 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069577 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069577 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069577	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069577_SC144.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069577_sample_table.txt norm	GSM1069577_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069576 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC PR8 infected rep1 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069576 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069576 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069576	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069576_SC143.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069576_sample_table.txt norm	GSM1069576_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069575 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC PR8 infected rep3 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069575 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069575 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069575	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069575_SC15.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069575_sample_table.txt norm	GSM1069575_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type
GSM1069574 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC PR8 infected rep2 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069574 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069574 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069574	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069574_SC14.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069574_sample_table.txt norm	GSM1069574_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type
GSM1069573 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC PR8 infected rep1 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069573 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069573 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069573	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069573_SC13.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069573_sample_table.txt norm	GSM1069573_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type
GSM1069572 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC mock infected rep3 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069572 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069572 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069572	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069572_SC130.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069572_sample_table.txt norm	GSM1069572_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069571 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC mock infected rep2 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069571 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069571 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069571	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069571_SC129.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069571_sample_table.txt norm	GSM1069571_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069570 1	Gene expression data from MTEC cells	tracheas from MAVS-/-	MTEC mock infected rep1 [C57Bl/6 MAVS -/-]	C57BL/6	EFO	EFO_0004472	MAVS-/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069570 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069570 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069570	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069570_SC128.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069570_sample_table.txt norm	GSM1069570_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	MAVS-/-
GSM1069569 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC mock infected rep3 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069569 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069569 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069569	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069569_SC3aa.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069569_sample_table.txt norm	GSM1069569_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type
GSM1069568 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC mock infected rep2 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069568 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069568 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069568	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069568_SC2aa.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069568_sample_table.txt norm	GSM1069568_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type
GSM1069567 1	Gene expression data from MTEC cells	tracheas from C57Bl/6 wt	MTEC mock infected rep1 [C57Bl/6 wt]	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	trachea	EFO	http://purl.obolibrary.org/obo/UBERON_0003126	P-GSE43709-2	ArrayExpress	P-GSE43709-3	ArrayExpress	P-GSE43709-4	ArrayExpress	GSM1069567 extract 1	total RNA	P-GSE43709-5	ArrayExpress	GSM1069567 LE 1	biotin	P-GSE43709-6	ArrayExpress	GSM1069567	A-AFFY-45	ArrayExpress	array assay	P-GSE43709-7	ArrayExpress	GSM1069567_SC1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.raw.1.zip	P-GSE43709-1	ArrayExpress	GSM1069567_sample_table.txt norm	GSM1069567_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-43709/E-GEOD-43709.processed.1.zip	wild-type