Source Name	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [cultivar]	Characteristics[organism part]	Characteristics [developmental stage]	Characteristics [phenotype]	Comment [Sample_source_name]	Comment [Sample_title]	Comment [purification]	Comment [preservation]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment[LIBRARY_LAYOUT]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment[FASTQ_URI]	Factor Value [organism part]	Factor Value [developmental stage]
GSM1056094 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	4 days after flowering	spherical embryo, acellular endosperm	whole seed	R08_4DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056094 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056094	SRX212244	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639162	SRR639162	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639162/SRR639162_1.fastq.gz	seed	4 days after flowering
GSM1056094 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	4 days after flowering	spherical embryo, acellular endosperm	whole seed	R08_4DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056094 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056094	SRX212244	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639162	SRR639162	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639162/SRR639162_2.fastq.gz	seed	4 days after flowering
GSM1056095 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	4 days after flowering	spherical embryo, acellular endosperm	whole seed	R83_4DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056095 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056095	SRX212245	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639163	SRR639163	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639163/SRR639163_1.fastq.gz	seed	4 days after flowering
GSM1056095 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	4 days after flowering	spherical embryo, acellular endosperm	whole seed	R83_4DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056095 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056095	SRX212245	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639163	SRR639163	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639163/SRR639163_2.fastq.gz	seed	4 days after flowering
GSM1056096 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	12 to 14 days after flowering	cotyledons elongate, endosperm forms cell walls	whole seed	R09_12-14DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056096 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056096	SRX212246	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639164	SRR639164	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639164/SRR639164_1.fastq.gz	seed	12 to 14 days after flowering
GSM1056096 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	12 to 14 days after flowering	cotyledons elongate, endosperm forms cell walls	whole seed	R09_12-14DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056096 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056096	SRX212246	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639164	SRR639164	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639164/SRR639164_2.fastq.gz	seed	12 to 14 days after flowering
GSM1056097 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	12 to 14 days after flowering	cotyledons elongate, endosperm forms cell walls	whole seed	R59_12-14DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056097 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056097	SRX212247	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639165	SRR639165	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639165/SRR639165_1.fastq.gz	seed	12 to 14 days after flowering
GSM1056097 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	12 to 14 days after flowering	cotyledons elongate, endosperm forms cell walls	whole seed	R59_12-14DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056097 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056097	SRX212247	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639165	SRR639165	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639165/SRR639165_2.fastq.gz	seed	12 to 14 days after flowering
GSM1056098 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	22 to 24 days after flowering	cotyledons have organelles, first trifoliate leaf initiates	whole seed	R36_22-24DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056098 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056098	SRX212248	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639166	SRR639166	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639166/SRR639166_1.fastq.gz	seed	22 to 24 days after flowering
GSM1056098 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	22 to 24 days after flowering	cotyledons have organelles, first trifoliate leaf initiates	whole seed	R36_22-24DAF_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056098 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056098	SRX212248	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639166	SRR639166	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639166/SRR639166_2.fastq.gz	seed	22 to 24 days after flowering
GSM1056099 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	22 to 24 days after flowering	cotyledons have organelles, first trifoliate leaf initiates	whole seed	R60_22-24DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056099 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056099	SRX212249	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639167	SRR639167	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639167/SRR639167_1.fastq.gz	seed	22 to 24 days after flowering
GSM1056099 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	22 to 24 days after flowering	cotyledons have organelles, first trifoliate leaf initiates	whole seed	R60_22-24DAF_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056099 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056099	SRX212249	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639167	SRR639167	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639167/SRR639167_2.fastq.gz	seed	22 to 24 days after flowering
GSM1056100 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	whole seed	R11_5-6mgWS_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056100 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056100	SRX212250	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639168	SRR639168	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639168/SRR639168_1.fastq.gz	seed	5 to 6mg fresh weight
GSM1056100 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	whole seed	R11_5-6mgWS_BR1	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056100 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056100	SRX212250	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639168	SRR639168	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639168/SRR639168_2.fastq.gz	seed	5 to 6mg fresh weight
GSM1056101 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	whole seed	R61_5-6mgWS_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056101 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056101	SRX212251	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639169	SRR639169	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639169/SRR639169_1.fastq.gz	seed	5 to 6mg fresh weight
GSM1056101 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	whole seed	R61_5-6mgWS_BR2	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056101 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056101	SRX212251	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639169	SRR639169	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639169/SRR639169_2.fastq.gz	seed	5 to 6mg fresh weight
GSM1056108 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	cotyledon	R50_5-6mgCOT	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056108 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056108	SRX212258	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639176	SRR639176	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639176/SRR639176_1.fastq.gz	cotyledon	5 to 6mg fresh weight
GSM1056108 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	cotyledon	R50_5-6mgCOT	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056108 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056108	SRX212258	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639176	SRR639176	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639176/SRR639176_2.fastq.gz	cotyledon	5 to 6mg fresh weight
GSM1056109 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed coat	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	seed coat	R49_5-6mgSC	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056109 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056109	SRX212259	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639177	SRR639177	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639177/SRR639177_1.fastq.gz	seed coat	5 to 6mg fresh weight
GSM1056109 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed coat	5 to 6mg fresh weight	endosperm depleted, rapid accumulation of water, nutrient	seed coat	R49_5-6mgSC	none	fresh frozen	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056109 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056109	SRX212259	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639177	SRR639177	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639177/SRR639177_2.fastq.gz	seed coat	5 to 6mg fresh weight
GSM1056102 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	100 to 200mg fresh weight	nutrient accumulation continues, storage proteins synthesized	cotyledon	R12_100-200mgCOT_BR1	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056102 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056102	SRX212252	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639170	SRR639170	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639170/SRR639170_1.fastq.gz	cotyledon	100 to 200mg fresh weight
GSM1056102 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	100 to 200mg fresh weight	nutrient accumulation continues, storage proteins synthesized	cotyledon	R12_100-200mgCOT_BR1	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056102 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056102	SRX212252	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639170	SRR639170	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639170/SRR639170_2.fastq.gz	cotyledon	100 to 200mg fresh weight
GSM1056103 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	100 to 200mg fresh weight	nutrient accumulation continues, storage proteins synthesized	cotyledon	R62_100-200mgCOT_BR2	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056103 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056103	SRX212253	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639171	SRR639171	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639171/SRR639171_1.fastq.gz	cotyledon	100 to 200mg fresh weight
GSM1056103 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	100 to 200mg fresh weight	nutrient accumulation continues, storage proteins synthesized	cotyledon	R62_100-200mgCOT_BR2	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056103 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056103	SRX212253	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639171	SRR639171	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639171/SRR639171_2.fastq.gz	cotyledon	100 to 200mg fresh weight
GSM1056104 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	400 to 500mg fresh weight	peak of fresh weight, embryo prepares for desiccation	cotyledon	R13_400-500mgCOT_BR1	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056104 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056104	SRX212254	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639172	SRR639172	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639172/SRR639172_1.fastq.gz	cotyledon	400 to 500mg fresh weight
GSM1056104 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	400 to 500mg fresh weight	peak of fresh weight, embryo prepares for desiccation	cotyledon	R13_400-500mgCOT_BR1	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056104 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056104	SRX212254	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639172	SRR639172	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639172/SRR639172_2.fastq.gz	cotyledon	400 to 500mg fresh weight
GSM1056105 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	400 to 500mg fresh weight	peak of fresh weight, embryo prepares for desiccation	cotyledon	R63_400-500mgCOT_BR2	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056105 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056105	SRX212255	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639173	SRR639173	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639173/SRR639173_1.fastq.gz	cotyledon	400 to 500mg fresh weight
GSM1056105 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	cotyledon	400 to 500mg fresh weight	peak of fresh weight, embryo prepares for desiccation	cotyledon	R63_400-500mgCOT_BR2	Qiagen Rneasy Midi kit	lyophilized	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056105 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056105	SRX212255	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639173	SRR639173	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639173/SRR639173_2.fastq.gz	cotyledon	400 to 500mg fresh weight
GSM1056106 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	dry mature seed	quiescent embryo, low moisture content	whole seed	R14_DrySeed_BR1	Qiagen Rneasy Midi kit	room temperature	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056106 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056106	SRX212256	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639174	SRR639174	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639174/SRR639174_1.fastq.gz	seed	dry mature seed
GSM1056106 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	dry mature seed	quiescent embryo, low moisture content	whole seed	R14_DrySeed_BR1	Qiagen Rneasy Midi kit	room temperature	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056106 extract 1	Illumina Genome Analyzer II	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056106	SRX212256	Illumina Genome Analyzer II (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639174	SRR639174	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639174/SRR639174_2.fastq.gz	seed	dry mature seed
GSM1056107 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	dry mature seed	quiescent embryo, low moisture content	whole seed	R103_DrySeed_BR2	none	room temperature	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056107 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056107	SRX212257	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639175	SRR639175	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639175/SRR639175_1.fastq.gz	seed	dry mature seed
GSM1056107 1	Glycine max	EFO	http://purl.obolibrary.org/obo/NCBITaxon_3847	Williams 43	seed	dry mature seed	quiescent embryo, low moisture content	whole seed	R103_DrySeed_BR2	none	room temperature	P-GSE42871-1	ArrayExpress	P-GSE42871-2	ArrayExpress	GSM1056107 extract 1	Illumina HiSeq 2000	PAIRED	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1056107	SRX212257	Illumina HiSeq 2000 (Glycine max)	sequencing assay	P-GSE42871-3	ArrayExpress	SRR639175	SRR639175	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/SRR639175/SRR639175_2.fastq.gz	seed	dry mature seed