Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [age]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM1051301 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 4	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 4	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051301 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051301	SRX209522	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630470_2.fastq.gz	SRR630470	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630470/SRR630470_2.fastq.gz	GSM1051301_8.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051301 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 4	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 4	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051301 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051301	SRX209522	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630470_1.fastq.gz	SRR630470	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630470/SRR630470_1.fastq.gz	GSM1051301_8.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051300 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 4	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 4	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051300 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051300	SRX209521	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630469_2.fastq.gz	SRR630469	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630469/SRR630469_2.fastq.gz	GSM1051300_7.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051300 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 4	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 4	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051300 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051300	SRX209521	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630469_1.fastq.gz	SRR630469	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630469/SRR630469_1.fastq.gz	GSM1051300_7.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051299 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 3	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 3	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051299 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051299	SRX209520	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630468_2.fastq.gz	SRR630468	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630468/SRR630468_2.fastq.gz	GSM1051299_6.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051299 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 3	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 3	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051299 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051299	SRX209520	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630468_1.fastq.gz	SRR630468	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630468/SRR630468_1.fastq.gz	GSM1051299_6.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051298 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 3	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 3	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051298 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051298	SRX209519	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630467_2.fastq.gz	SRR630467	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630467/SRR630467_2.fastq.gz	GSM1051298_5.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051298 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 3	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 3	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051298 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051298	SRX209519	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630467_1.fastq.gz	SRR630467	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630467/SRR630467_1.fastq.gz	GSM1051298_5.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051297 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 2	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 2	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051297 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051297	SRX209518	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630466_2.fastq.gz	SRR630466	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630466/SRR630466_2.fastq.gz	GSM1051297_4.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051297 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 2	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 2	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051297 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051297	SRX209518	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630466_1.fastq.gz	SRR630466	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630466/SRR630466_1.fastq.gz	GSM1051297_4.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051296 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 2	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 2	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051296 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051296	SRX209517	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630465_2.fastq.gz	SRR630465	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630465/SRR630465_2.fastq.gz	GSM1051296_3.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051296 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 2	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 2	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051296 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051296	SRX209517	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630465_1.fastq.gz	SRR630465	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630465/SRR630465_1.fastq.gz	GSM1051296_3.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051295 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 1	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 1	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051295 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051295	SRX209516	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630464_2.fastq.gz	SRR630464	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630464/SRR630464_2.fastq.gz	GSM1051295_2.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051295 1	Wildtype; injected with S. epidermidis into the yolk at 2 hpf; RNA isolated at 5 days post injection. Biological replica 1	S. epi mcherry O-47 5 DPI	S. epi mcherry O-47 5 DPI, biol. repl. 1	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051295 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051295	SRX209516	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630464_1.fastq.gz	SRR630464	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630464/SRR630464_1.fastq.gz	GSM1051295_2.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051294 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 1	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 1	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051294 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051294	SRX209515	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630463_2.fastq.gz	SRR630463	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630463/SRR630463_2.fastq.gz	GSM1051294_1.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip
GSM1051294 1	Wildtype: non-injected control; RNA isolated at 5 days post fertilization (=5DPI timepoint). Biological replica 1	Non-injected 5 DPI	Non-injected 5 DPI, biol. repl. 1	5 days post fertilization	Danio rerio	EFO	http://purl.obolibrary.org/obo/NCBITaxon_7955	embryo	EFO	EFO_0001367	P-GSE42846-1	ArrayExpress	P-GSE42846-2	ArrayExpress	P-GSE42846-3	ArrayExpress	GSM1051294 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1051294	SRX209515	Illumina HiSeq 2000 (Danio rerio)	sequencing assay	P-GSE42846-4	ArrayExpress	SRR630463_1.fastq.gz	SRR630463	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR630/SRR630463/SRR630463_1.fastq.gz	GSM1051294_1.tsv	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42846/E-GEOD-42846.processed.1.zip