Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [cell type] Characteristics [induced with] Characteristics [strain background] Term Source REF Term Accession Number Characteristics [variation] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [VARIATION] Term Source REF Term Accession Number GSM1051224 1 kd.uninduced.2 MEL_Ldb1 shRNA knockdown_uninduced MEL_Ldb1KD_uninduced_rep2 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells BALB/c EFO EFO_0000602 Ldb1 shRNA knockdown P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051224 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051224 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051224 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051224_08-27-08_ADean_S-HSD2_Mouse430_2_D2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051224_sample_table.txt norm GSM1051224_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip Ldb1 shRNA knockdown GSM1051223 1 kd.uninduced.1 MEL_Ldb1 shRNA knockdown_uninduced MEL_Ldb1KD_uninduced_rep1 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells BALB/c EFO EFO_0000602 Ldb1 shRNA knockdown P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051223 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051223 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051223 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051223_08-27-08_ADean_S-HSD1_Mouse430_2_D1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051223_sample_table.txt norm GSM1051223_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip Ldb1 shRNA knockdown GSM1051222 1 control.uninduced.2 MEL_control knockdown_uninduced MEL_control_uninduced_rep2 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells BALB/c EFO EFO_0000602 control EFO EFO_0001461 P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051222 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051222 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051222 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051222_08-27-08_ADean_S-HSC2_Mouse430_2_C2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051222_sample_table.txt norm GSM1051222_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip control EFO EFO_0001461 GSM1051221 1 control.uninduced.1 MEL_control knockdown_uninduced MEL_control_uninduced_rep1 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells BALB/c EFO EFO_0000602 control EFO EFO_0001461 P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051221 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051221 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051221 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051221_08-27-08_ADean_S-HSC1_Mouse430_2_C1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051221_sample_table.txt norm GSM1051221_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip control EFO EFO_0001461 GSM1051220 1 kd.induced.3 MEL_Ldb1 shRNA knockdown_DMSO induced MEL_Ldb1KD_induced_rep3 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 Ldb1 shRNA knockdown P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051220 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051220 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051220 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051220_07-24-08_ADean_6SHS_Mouse430_2_B3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051220_sample_table.txt norm GSM1051220_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip Ldb1 shRNA knockdown GSM1051219 1 kd.induced.2 MEL_Ldb1 shRNA knockdown_DMSO induced MEL_Ldb1KD_induced_rep2 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 Ldb1 shRNA knockdown P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051219 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051219 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051219 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051219_07-24-08_ADean_5SHS_Mouse430_2_B2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051219_sample_table.txt norm GSM1051219_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip Ldb1 shRNA knockdown GSM1051218 1 kd.induced.1 MEL_Ldb1 shRNA knockdown_DMSO induced MEL_Ldb1KD_induced_rep1 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 Ldb1 shRNA knockdown P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051218 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051218 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051218 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051218_07-24-08_ADean_4SHS_Mouse430_2_B1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051218_sample_table.txt norm GSM1051218_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip Ldb1 shRNA knockdown GSM1051217 1 control.induced.3 MEL_control knockdown_DMSO induced MEL_control_induced_rep3 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 control EFO EFO_0001461 P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051217 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051217 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051217 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051217_07-24-08_ADean_3SHS_Mouse430_2_A3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051217_sample_table.txt norm GSM1051217_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip control EFO EFO_0001461 GSM1051216 1 control.induced.2 MEL_control knockdown_DMSO induced MEL_control_induced_rep2 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 control EFO EFO_0001461 P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051216 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051216 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051216 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051216_07-24-08_ADean_2SHS_Mouse430_2_A2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051216_sample_table.txt norm GSM1051216_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip control EFO EFO_0001461 GSM1051215 1 control.induced.1 MEL_control knockdown_DMSO induced MEL_control_induced_rep1 Mus musculus EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090 Murine erythroidleukema (MEL) cells 1.5-2% DMSO BALB/c EFO EFO_0000602 control EFO EFO_0001461 P-GSE42839-2 ArrayExpress P-GSE42839-3 ArrayExpress P-GSE42839-4 ArrayExpress GSM1051215 extract 1 total RNA P-GSE42839-5 ArrayExpress GSM1051215 LE 1 biotin P-GSE42839-6 ArrayExpress GSM1051215 A-GEOD-16368 ArrayExpress array assay P-GSE42839-7 ArrayExpress P-GSE42839-8 ArrayExpress GSM1051215_07-24-08_ADean_1SHS_Mouse430_2_A1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.raw.1.zip P-GSE42839-1 ArrayExpress GSM1051215_sample_table.txt norm GSM1051215_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42839/E-GEOD-42839.processed.1.zip control EFO EFO_0001461