Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [antibody]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [vendor]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CELL TYPE]	Term Source REF	Term Accession Number	FactorValue [TREATMENT]	Term Source REF	Term Accession Number
GSM1045178 1	  	NTera2/D1 cells	plusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045178 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045178	SRX206684	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045178_GROseq_plusRA.bfast.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.1.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045178 1	  	NTera2/D1 cells	plusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045178 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045178	SRX206684	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045178_GROseq_plusRA.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.2.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045178 1	  	NTera2/D1 cells	plusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045178 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045178	SRX206684	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045178_GRO-seq_plusRA.4mil.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.2.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045177 1	  	NTera2/D1 cells	minusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045177 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045177	SRX206683	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045177_GROseq_minusRA.bfast.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.3.zip	NTera2/D1	  	  	none	  	        
GSM1045177 1	  	NTera2/D1 cells	minusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045177 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045177	SRX206683	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045177_GROseq_minusRA.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.3.zip	NTera2/D1	  	  	none	  	        
GSM1045177 1	  	NTera2/D1 cells	minusRA_GRO-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-13	ArrayExpress	GSM1045177 extract 1	Illumina HiSeq 2000	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045177	SRX206683	Illumina HiSeq 2000 (Homo sapiens)	sequencing assay	P-GSE42602-14	ArrayExpress	GSM1045177_GRO-seq_minusRA.4mil.bedgraph	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.4.zip	NTera2/D1	  	  	none	  	        
GSM1045174 1	  	NTera2/D1 cells	small_RNA-seq_plusRA	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-10	ArrayExpress	P-GSE42602-11	ArrayExpress	GSM1045174 extract 1	Illumina Genome Analyzer II	size fractionation	transcriptomic	RNA-Seq	total RNA	GSM1045174	  	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-12	ArrayExpress	GSM1045174_aligned.small-RNA-seq_to_DR2-Alu.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.4.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045173 1	  	NTera2/D1 cells	plusRA_RNA-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-8	ArrayExpress	GSM1045173 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045173	  	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-9	ArrayExpress	GSM1045173_plusRA.rseq.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.4.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045173 1	  	NTera2/D1 cells	plusRA_RNA-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-8	ArrayExpress	GSM1045173 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045173	  	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-9	ArrayExpress	GSM1045173_induced.DR2-Alu.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.4.zip	NTera2/D1	  	  	RA	EFO	EFO_0003802
GSM1045172 1	  	NTera2/D1 cells	minusRA_RNA-seq	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	  	NTera2/D1	  	  	  	P-GSE42602-7	ArrayExpress	P-GSE42602-6	ArrayExpress	P-GSE42602-8	ArrayExpress	GSM1045172 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM1045172	  	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-9	ArrayExpress	GSM1045172_minusRA.rseq.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.4.zip	NTera2/D1	  	  	none	  	        
GSM765963 1	ChIP on H3K36me3	Ntera2 cells	H3K36me3_plusRA	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	H3K36me3	NTera2	EFO	EFO_0002959	Abcam (Cat. # ab9050)	P-GSE42602-2	ArrayExpress	P-GSE42602-5	ArrayExpress	P-GSE42602-3	ArrayExpress	GSM765963 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM765963	SRX084801	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-4	ArrayExpress	GSM765963_H3K36me3_plusRA.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.5.zip	NTera2	EFO	EFO_0002959	with retinoic acid	  	        
GSM765962 1	ChIP on H3K36me3	Ntera2 cells	H3K36me3_minusRA	Homo sapiens	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_9606	H3K36me3	NTera2	EFO	EFO_0002959	Abcam (Cat. # ab9050)	P-GSE42602-2	ArrayExpress	P-GSE42602-1	ArrayExpress	P-GSE42602-3	ArrayExpress	GSM765962 extract 1	Illumina Genome Analyzer II	ChIP	genomic	ChIP-Seq	genomic DNA	GSM765962	SRX084800	Illumina Genome Analyzer II (Homo sapiens)	sequencing assay	P-GSE42602-4	ArrayExpress	GSM765962_H3K36me3_minusRA.bed	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42602/E-GEOD-42602.processed.6.zip	NTera2	EFO	EFO_0002959	no retinoic acid