Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [development stage]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [TREATMENT]	Term Source REF	Term Accession Number
GSM1035413 1	gene expression in indicated KD	embryonic stem cells, KD replicate B	Tip60Hdac6 KD,replicate B	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035413 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035413 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035413	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035413_Tip60Hdac6_B.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035413_sample_table.txt norm	GSM1035413_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Tip60 & Hdac6 knock down	  	        
GSM1035412 1	gene expression in indicated KD	embryonic stem cells, KD replicate A	Tip60Hdac6 KD,replicate A	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035412 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035412 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035412	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035412_Tip60Hdac6_A.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035412_sample_table.txt norm	GSM1035412_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Tip60 & Hdac6 knock down	  	        
GSM1035411 1	gene expression in indicated KD	embryonic stem cells, KD replicate B	Hdac6 KD,replicate B	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035411 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035411 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035411	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035411_Hdac6_B.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035411_sample_table.txt norm	GSM1035411_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Hdac6 knock down	  	        
GSM1035410 1	gene expression in indicated KD	embryonic stem cells, KD replicate A	Hdac6 KD,replicate A	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035410 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035410 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035410	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035410_Hdac6_A.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035410_sample_table.txt norm	GSM1035410_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Hdac6 knock down	  	        
GSM1035409 1	gene expression in indicated KD	embryonic stem cells, KD replicate B	Tip60 KD,replicate B	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035409 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035409 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035409	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035409_Tip60_B.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035409_sample_table.txt norm	GSM1035409_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Tip60 knock down	  	        
GSM1035408 1	gene expression in indicated KD	embryonic stem cells, KD replicate A	Tip60 KD,replicate A	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035408 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035408 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035408	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035408_Tip60_A.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035408_sample_table.txt norm	GSM1035408_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	Lentiviral-based shRNA was used for Tip60 knock down	  	        
GSM1035407 1	gene expression in indicated KD	embryonic stem cells, KD replicate B	EGFP KD,replicate B	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035407 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035407 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035407	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035407_EGFP_B.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035407_sample_table.txt norm	GSM1035407_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	control	EFO	EFO_0001461
GSM1035406 1	gene expression in indicated KD	embryonic stem cells, KD replicate A	EGFP KD,replicate A	E14	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42208-2	ArrayExpress	P-GSE42208-3	ArrayExpress	P-GSE42208-4	ArrayExpress	GSM1035406 extract 1	total RNA	P-GSE42208-5	ArrayExpress	GSM1035406 LE 1	Cy3	P-GSE42208-6	ArrayExpress	GSM1035406	A-GEOD-10333	ArrayExpress	array assay	P-GSE42208-7	ArrayExpress	GSM1035406_EGFP_A.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.raw.1.zip	P-GSE42208-1	ArrayExpress	GSM1035406_sample_table.txt norm	GSM1035406_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42208/E-GEOD-42208.processed.1.zip	control	EFO	EFO_0001461