Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Term Source REF	Term Accession Number	Characteristics [genetic background]	Term Source REF	Term Accession Number	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM1034003 1	Alveolar macrophages from Cavin-1 knockout 4	Alveolar macrophages, C57BL/6 Cavin-1 -/-	Cavin-1 knockout 4	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	Cavin-1 -/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1034003 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1034003 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1034003	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1034003_RS_C4_A7_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1034003_sample_table.txt norm	GSM1034003_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	Cavin-1 -/-
GSM1034002 1	Alveolar macrophages from Cavin-1 knockout 3	Alveolar macrophages, C57BL/6 Cavin-1 -/-	Cavin-1 knockout 3	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	Cavin-1 -/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1034002 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1034002 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1034002	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1034002_RS_C3_A6_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1034002_sample_table.txt norm	GSM1034002_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	Cavin-1 -/-
GSM1034001 1	Alveolar macrophages from Cavin-1 knockout 2	Alveolar macrophages, C57BL/6 Cavin-1 -/-	Cavin-1 knockout 2	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	Cavin-1 -/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1034001 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1034001 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1034001	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1034001_RS_C2_A5_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1034001_sample_table.txt norm	GSM1034001_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	Cavin-1 -/-
GSM1034000 1	Alveolar macrophages from Cavin-1 knockout 1	Alveolar macrophages, C57BL/6 Cavin-1 -/-	Cavin-1 knockout 1	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	Cavin-1 -/-	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1034000 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1034000 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1034000	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1034000_RS_C1_A4_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1034000_sample_table.txt norm	GSM1034000_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	Cavin-1 -/-
GSM1033999 1	Alveolar macrophages from wild-type 3	Alveolar macrophages, C57BL/6 wild-type mouse	Wild-type 3	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1033999 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1033999 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1033999	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1033999_RS_W3_A3_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1033999_sample_table.txt norm	GSM1033999_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	wild-type
GSM1033998 1	Alveolar macrophages from wild-type 2	Alveolar macrophages, C57BL/6 wild-type mouse	Wild-type 2	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1033998 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1033998 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1033998	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1033998_RS_W2_A2_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1033998_sample_table.txt norm	GSM1033998_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	wild-type
GSM1033997 1	Alveolar macrophages from wild-type 1	Alveolar macrophages, C57BL/6 wild-type mouse	Wild-type 1	alveolar macrophage	EFO	http://purl.org/obo/owl/CL#CL_0000583	C57BL/6	EFO	EFO_0004472	wild-type	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	P-GSE42169-2	ArrayExpress	P-GSE42169-3	ArrayExpress	GSM1033997 extract 1	total RNA	P-GSE42169-4	ArrayExpress	GSM1033997 LE 1	biotin	P-GSE42169-5	ArrayExpress	GSM1033997	A-GEOD-16264	ArrayExpress	array assay	P-GSE42169-6	ArrayExpress	GSM1033997_RS_W1_A1_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.raw.1.zip	P-GSE42169-1	ArrayExpress	GSM1033997_sample_table.txt norm	GSM1033997_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-42169/E-GEOD-42169.processed.1.zip	wild-type