Source Name	Comment [Sample_characteristics]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [cell type]	Characteristics [developmental stage]	Term Source REF	Term Accession Number	Characteristics [infection]	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [strain or line]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [INFECTION]
GSM1026925 1	culture protocol [pre-infection]: cultured as neurospheres for 9 days in vitro in the presence of FGF2 and EGF culture protocol [post-infection]: cultured in the absence of FGF for 12 h	Neuroepithelial cells from the neocortex of embryonic day 11.5 mice cultured for 9 days and infected with HMGA2-expressing retrovirus for 3 days, followed by culturing in the absence of FGF for 12 h	9div A2 12h	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	Neuroepithelial cells	embryonic day 11.5	EFO	EFO_0002562	HMGA2-expressing retrovirus	brain	EFO	EFO_0000302	Jcl:ICR	P-GSE41882-2	ArrayExpress	GSM1026925 extract 1	total RNA	P-GSE41882-3	ArrayExpress	GSM1026925 LE 1	biotin	P-GSE41882-4	ArrayExpress	GSM1026925	A-AFFY-130	ArrayExpress	array assay	P-GSE41882-5	ArrayExpress	P-GSE41882-6	ArrayExpress	GSM1026925_9div_A2_12h_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.raw.1.zip	P-GSE41882-1	ArrayExpress	GSM1026925_sample_table.txt norm	GSM1026925_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.processed.1.zip	HMGA2-expressing retrovirus
GSM1026924 1	culture protocol [pre-infection]: cultured as neurospheres for 9 days in vitro in the presence of FGF2 and EGF culture protocol [post-infection]: cultured in the absence of FGF for 12 h	Neuroepithelial cells from the neocortex of embryonic day 11.5 mice cultured for 9 days and infected with control retrovirus for 3 days, followed by culturing in the absence of FGF for 12 h	9div cont 12h	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	Neuroepithelial cells	embryonic day 11.5	EFO	EFO_0002562	control retrovirus	brain	EFO	EFO_0000302	Jcl:ICR	P-GSE41882-2	ArrayExpress	GSM1026924 extract 1	total RNA	P-GSE41882-3	ArrayExpress	GSM1026924 LE 1	biotin	P-GSE41882-4	ArrayExpress	GSM1026924	A-AFFY-130	ArrayExpress	array assay	P-GSE41882-5	ArrayExpress	P-GSE41882-6	ArrayExpress	GSM1026924_9div_cont_12h_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.raw.1.zip	P-GSE41882-1	ArrayExpress	GSM1026924_sample_table.txt norm	GSM1026924_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.processed.1.zip	control retrovirus
GSM1026923 1	culture protocol [pre-infection]: cultured as neurospheres for 9 days in vitro in the presence of FGF2 and EGF culture protocol [post-infection]: n/a	Neuroepithelial cells from the neocortex of embryonic day 11.5 mice cultured for 9 days and infected with HMGA2-expressing retrovirus for 3 days	9div A2 0h	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	Neuroepithelial cells	embryonic day 11.5	EFO	EFO_0002562	HMGA2-expressing retrovirus	brain	EFO	EFO_0000302	Jcl:ICR	P-GSE41882-2	ArrayExpress	GSM1026923 extract 1	total RNA	P-GSE41882-3	ArrayExpress	GSM1026923 LE 1	biotin	P-GSE41882-4	ArrayExpress	GSM1026923	A-AFFY-130	ArrayExpress	array assay	P-GSE41882-5	ArrayExpress	P-GSE41882-6	ArrayExpress	GSM1026923_9div_A2_0h_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.raw.1.zip	P-GSE41882-1	ArrayExpress	GSM1026923_sample_table.txt norm	GSM1026923_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.processed.1.zip	HMGA2-expressing retrovirus
GSM1026922 1	culture protocol [pre-infection]: cultured as neurospheres for 9 days in vitro in the presence of FGF2 and EGF culture protocol [post-infection]: n/a	Neuroepithelial cells from the neocortex of embryonic day 11.5 mice cultured for 9 days and infected with control retrovirus for 3 days	9div cont 0h	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	Neuroepithelial cells	embryonic day 11.5	EFO	EFO_0002562	control retrovirus	brain	EFO	EFO_0000302	Jcl:ICR	P-GSE41882-2	ArrayExpress	GSM1026922 extract 1	total RNA	P-GSE41882-3	ArrayExpress	GSM1026922 LE 1	biotin	P-GSE41882-4	ArrayExpress	GSM1026922	A-AFFY-130	ArrayExpress	array assay	P-GSE41882-5	ArrayExpress	P-GSE41882-6	ArrayExpress	GSM1026922_9div_cont_0h_MoGene-1_0-st-v1_.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.raw.1.zip	P-GSE41882-1	ArrayExpress	GSM1026922_sample_table.txt norm	GSM1026922_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41882/E-GEOD-41882.processed.1.zip	control retrovirus