Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [animal]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [tissue-cy3]	Characteristics [tissue-cy5]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [TISSUE-CY3]
GSM1025341 2	10512 Inf Data 4hrs S4::10510 Co Data 4hrs S4::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025341 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025341 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025341	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025341_10512_Inf_Data_F.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025341_sample_table.txt norm	GSM1025341_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025341 2	10512 Inf Data 4hrs S4::10510 Co Data 4hrs S4::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025341 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025341 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025341	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025341_10510_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025341_sample_table.txt norm	GSM1025341_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025341 1	10512 Inf Data 4hrs S4::10510 Co Data 4hrs S4::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025341 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025341 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025341	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025341_10512_Inf_Data_F.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025341_sample_table.txt norm	GSM1025341_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025341 1	10512 Inf Data 4hrs S4::10510 Co Data 4hrs S4::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025341 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025341 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025341	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025341_10510_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025341_sample_table.txt norm	GSM1025341_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025340 1	10487 Inf Data 4hrs S3::10485 Co Data 4hrs S3::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025340 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025340 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025340	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025340_10487_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025340_sample_table.txt norm	GSM1025340_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025340 1	10487 Inf Data 4hrs S3::10485 Co Data 4hrs S3::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025340 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025340 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025340	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025340_10485_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025340_sample_table.txt norm	GSM1025340_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025340 2	10487 Inf Data 4hrs S3::10485 Co Data 4hrs S3::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025340 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025340 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025340	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025340_10487_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025340_sample_table.txt norm	GSM1025340_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025340 2	10487 Inf Data 4hrs S3::10485 Co Data 4hrs S3::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025340 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025340 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025340	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025340_10485_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025340_sample_table.txt norm	GSM1025340_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025339 2	10463 Inf Data 4hrs S2::10461 Co Data 4hrs S2::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025339 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025339 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025339	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025339_10463_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025339_sample_table.txt norm	GSM1025339_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025339 2	10463 Inf Data 4hrs S2::10461 Co Data 4hrs S2::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025339 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025339 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025339	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025339_10461_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025339_sample_table.txt norm	GSM1025339_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025339 1	10463 Inf Data 4hrs S2::10461 Co Data 4hrs S2::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025339 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025339 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025339	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025339_10463_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025339_sample_table.txt norm	GSM1025339_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025339 1	10463 Inf Data 4hrs S2::10461 Co Data 4hrs S2::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025339 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025339 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025339	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025339_10461_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025339_sample_table.txt norm	GSM1025339_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025338 1	10441 Inf Data 4hr S1::10439 Co Data 4hr S1::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025338 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025338 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025338	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025338_10441_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025338_sample_table.txt norm	GSM1025338_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025338 1	10441 Inf Data 4hr S1::10439 Co Data 4hr S1::t=240	Distal ileum, inoculated with Bmel 16M collected at 4 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025338 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025338 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025338	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025338_10439_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025338_sample_table.txt norm	GSM1025338_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025338 2	10441 Inf Data 4hr S1::10439 Co Data 4hr S1::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025338 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025338 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025338	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025338_10441_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025338_sample_table.txt norm	GSM1025338_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025338 2	10441 Inf Data 4hr S1::10439 Co Data 4hr S1::t=240	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 4 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 240 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025338 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025338 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025338	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025338_10439_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025338_sample_table.txt norm	GSM1025338_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025337 1	10509 Inf Data 2hrs S4::10507 Co Data 2hrs S4::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025337 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025337 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025337	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025337_10509_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025337_sample_table.txt norm	GSM1025337_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025337 1	10509 Inf Data 2hrs S4::10507 Co Data 2hrs S4::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025337 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025337 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025337	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025337_10507_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025337_sample_table.txt norm	GSM1025337_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025337 2	10509 Inf Data 2hrs S4::10507 Co Data 2hrs S4::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025337 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025337 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025337	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025337_10509_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025337_sample_table.txt norm	GSM1025337_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025337 2	10509 Inf Data 2hrs S4::10507 Co Data 2hrs S4::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025337 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025337 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025337	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025337_10507_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025337_sample_table.txt norm	GSM1025337_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025336 2	10484 Inf Data 2hrs S3::10482 Co Data 2hrs S3::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025336 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025336 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025336	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025336_10484_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025336_sample_table.txt norm	GSM1025336_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025336 2	10484 Inf Data 2hrs S3::10482 Co Data 2hrs S3::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025336 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025336 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025336	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025336_10482_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025336_sample_table.txt norm	GSM1025336_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025336 1	10484 Inf Data 2hrs S3::10482 Co Data 2hrs S3::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025336 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025336 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025336	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025336_10484_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025336_sample_table.txt norm	GSM1025336_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025336 1	10484 Inf Data 2hrs S3::10482 Co Data 2hrs S3::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025336 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025336 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025336	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025336_10482_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025336_sample_table.txt norm	GSM1025336_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025335 1	10460 Inf Data 2hrs S2::10458 Co Data 2hrs S2::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025335 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025335 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025335	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025335_10460_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025335_sample_table.txt norm	GSM1025335_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025335 1	10460 Inf Data 2hrs S2::10458 Co Data 2hrs S2::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025335 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025335 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025335	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025335_10458_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025335_sample_table.txt norm	GSM1025335_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025335 2	10460 Inf Data 2hrs S2::10458 Co Data 2hrs S2::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025335 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025335 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025335	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025335_10460_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025335_sample_table.txt norm	GSM1025335_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025335 2	10460 Inf Data 2hrs S2::10458 Co Data 2hrs S2::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025335 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025335 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025335	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025335_10458_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025335_sample_table.txt norm	GSM1025335_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025334 1	10438 Inf Data 2hr S1::10436 Co Data 2hr S1::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025334 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025334 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025334	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025334_10438_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025334_sample_table.txt norm	GSM1025334_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025334 1	10438 Inf Data 2hr S1::10436 Co Data 2hr S1::t=120	Distal ileum, inoculated with Bmel 16M collected at 2 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025334 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025334 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025334	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025334_10436_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025334_sample_table.txt norm	GSM1025334_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025334 2	10438 Inf Data 2hr S1::10436 Co Data 2hr S1::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025334 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025334 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025334	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025334_10438_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025334_sample_table.txt norm	GSM1025334_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025334 2	10438 Inf Data 2hr S1::10436 Co Data 2hr S1::t=120	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 2 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 120 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025334 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025334 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025334	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025334_10436_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025334_sample_table.txt norm	GSM1025334_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025333 2	10505 Inf Data 1hrs S4::10503 Co Data 1hrs S4::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025333 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025333 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025333	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025333_10505_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025333_sample_table.txt norm	GSM1025333_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025333 2	10505 Inf Data 1hrs S4::10503 Co Data 1hrs S4::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025333 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025333 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025333	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025333_10503_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025333_sample_table.txt norm	GSM1025333_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025333 1	10505 Inf Data 1hrs S4::10503 Co Data 1hrs S4::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025333 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025333 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025333	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025333_10505_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025333_sample_table.txt norm	GSM1025333_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025333 1	10505 Inf Data 1hrs S4::10503 Co Data 1hrs S4::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025333 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025333 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025333	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025333_10503_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025333_sample_table.txt norm	GSM1025333_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025332 1	10480 Inf Data 1hrs S3::10478 Co Data 1hrs S3::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025332 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025332 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025332	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025332_10480_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025332_sample_table.txt norm	GSM1025332_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025332 1	10480 Inf Data 1hrs S3::10478 Co Data 1hrs S3::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025332 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025332 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025332	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025332_10478_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025332_sample_table.txt norm	GSM1025332_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025332 2	10480 Inf Data 1hrs S3::10478 Co Data 1hrs S3::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025332 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025332 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025332	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025332_10480_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025332_sample_table.txt norm	GSM1025332_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025332 2	10480 Inf Data 1hrs S3::10478 Co Data 1hrs S3::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025332 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025332 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025332	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025332_10478_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025332_sample_table.txt norm	GSM1025332_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025331 1	10457 Inf Data 1hrs S2::10455 Co Data 1hrs S2::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025331 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025331 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025331	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025331_10457_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025331_sample_table.txt norm	GSM1025331_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025331 1	10457 Inf Data 1hrs S2::10455 Co Data 1hrs S2::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025331 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025331 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025331	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025331_10455_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025331_sample_table.txt norm	GSM1025331_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025331 2	10457 Inf Data 1hrs S2::10455 Co Data 1hrs S2::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025331 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025331 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025331	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025331_10457_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025331_sample_table.txt norm	GSM1025331_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025331 2	10457 Inf Data 1hrs S2::10455 Co Data 1hrs S2::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025331 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025331 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025331	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025331_10455_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025331_sample_table.txt norm	GSM1025331_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025330 1	10435 Inf Data 1hr S1::10433 Co Data 1hr S1::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025330 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025330 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025330	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025330_10435_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025330_sample_table.txt norm	GSM1025330_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025330 1	10435 Inf Data 1hr S1::10433 Co Data 1hr S1::t=60	Distal ileum, inoculated with Bmel 16M collected at 1 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025330 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025330 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025330	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025330_10433_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025330_sample_table.txt norm	GSM1025330_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025330 2	10435 Inf Data 1hr S1::10433 Co Data 1hr S1::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025330 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025330 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025330	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025330_10435_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025330_sample_table.txt norm	GSM1025330_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025330 2	10435 Inf Data 1hr S1::10433 Co Data 1hr S1::t=60	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 1 h, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 60 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025330 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025330 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025330	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025330_10433_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025330_sample_table.txt norm	GSM1025330_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025329 1	10502 Inf Data 30min S4::10500 Co Data 30min S4::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025329 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025329 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025329	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025329_10502_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025329_sample_table.txt norm	GSM1025329_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025329 1	10502 Inf Data 30min S4::10500 Co Data 30min S4::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025329 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025329 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025329	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025329_10500_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025329_sample_table.txt norm	GSM1025329_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025329 2	10502 Inf Data 30min S4::10500 Co Data 30min S4::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025329 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025329 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025329	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025329_10502_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025329_sample_table.txt norm	GSM1025329_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025329 2	10502 Inf Data 30min S4::10500 Co Data 30min S4::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025329 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025329 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025329	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025329_10500_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025329_sample_table.txt norm	GSM1025329_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025328 1	10477 Inf Data 30min S3::10475 Co Data 30 min S3::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025328 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025328 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025328	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025328_10477_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025328_sample_table.txt norm	GSM1025328_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025328 1	10477 Inf Data 30min S3::10475 Co Data 30 min S3::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025328 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025328 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025328	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025328_10475_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025328_sample_table.txt norm	GSM1025328_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025328 2	10477 Inf Data 30min S3::10475 Co Data 30 min S3::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025328 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025328 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025328	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025328_10477_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025328_sample_table.txt norm	GSM1025328_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025328 2	10477 Inf Data 30min S3::10475 Co Data 30 min S3::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025328 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025328 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025328	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025328_10475_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025328_sample_table.txt norm	GSM1025328_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025327 1	10454 Inf Data 30min S2::10452 Co Data 30min S2::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025327 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025327 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025327	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025327_10454_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025327_sample_table.txt norm	GSM1025327_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025327 1	10454 Inf Data 30min S2::10452 Co Data 30min S2::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025327 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025327 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025327	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025327_10452_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025327_sample_table.txt norm	GSM1025327_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025327 2	10454 Inf Data 30min S2::10452 Co Data 30min S2::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025327 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025327 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025327	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025327_10454_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025327_sample_table.txt norm	GSM1025327_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025327 2	10454 Inf Data 30min S2::10452 Co Data 30min S2::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025327 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025327 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025327	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025327_10452_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025327_sample_table.txt norm	GSM1025327_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025326 1	10432 Inf Data 30min S1::10430 Co Data 30min S1::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025326 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025326 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025326	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025326_10432_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025326_sample_table.txt norm	GSM1025326_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025326 1	10432 Inf Data 30min S1::10430 Co Data 30min S1::t=30	Distal ileum, inoculated with Bmel 16M collected at 30 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025326 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025326 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025326	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025326_10430_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025326_sample_table.txt norm	GSM1025326_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025326 2	10432 Inf Data 30min S1::10430 Co Data 30min S1::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025326 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025326 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025326	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025326_10432_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025326_sample_table.txt norm	GSM1025326_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025326 2	10432 Inf Data 30min S1::10430 Co Data 30min S1::t=30	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 30 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 30 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025326 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025326 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025326	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025326_10430_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025326_sample_table.txt norm	GSM1025326_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025325 1	10498 Inf Data 15min S4::10496 Co Data 15min S4::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025325 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025325 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025325	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025325_10498_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025325_sample_table.txt norm	GSM1025325_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025325 1	10498 Inf Data 15min S4::10496 Co Data 15min S4::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025325 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025325 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025325	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025325_10496_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025325_sample_table.txt norm	GSM1025325_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025325 2	10498 Inf Data 15min S4::10496 Co Data 15min S4::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025325 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025325 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025325	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025325_10498_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025325_sample_table.txt norm	GSM1025325_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025325 2	10498 Inf Data 15min S4::10496 Co Data 15min S4::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 4 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 4	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025325 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025325 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025325	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025325_10496_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025325_sample_table.txt norm	GSM1025325_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025324 1	10473 Inf Data 15min S3::10471 Co Data 15min S3::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025324 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025324 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025324	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025324_10473_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025324_sample_table.txt norm	GSM1025324_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025324 1	10473 Inf Data 15min S3::10471 Co Data 15min S3::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025324 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025324 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025324	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025324_10471_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025324_sample_table.txt norm	GSM1025324_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025324 2	10473 Inf Data 15min S3::10471 Co Data 15min S3::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025324 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025324 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025324	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025324_10473_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025324_sample_table.txt norm	GSM1025324_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025324 2	10473 Inf Data 15min S3::10471 Co Data 15min S3::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 3 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 3	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025324 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025324 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025324	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025324_10471_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025324_sample_table.txt norm	GSM1025324_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025323 1	10451 Inf Data 15min S2::10449 Co Data 15min S2::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025323 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025323 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025323	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025323_10451_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025323_sample_table.txt norm	GSM1025323_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025323 1	10451 Inf Data 15min S2::10449 Co Data 15min S2::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025323 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025323 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025323	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025323_10449_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025323_sample_table.txt norm	GSM1025323_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025323 2	10451 Inf Data 15min S2::10449 Co Data 15min S2::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025323 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025323 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025323	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025323_10451_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025323_sample_table.txt norm	GSM1025323_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025323 2	10451 Inf Data 15min S2::10449 Co Data 15min S2::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 2 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 2	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025323 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025323 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025323	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025323_10449_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025323_sample_table.txt norm	GSM1025323_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025322 2	10429 Inf Data 15min S1::10427 Co Data 15min S1::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025322 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025322 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025322	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025322_10429_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025322_sample_table.txt norm	GSM1025322_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025322 2	10429 Inf Data 15min S1::10427 Co Data 15min S1::t=15	Distal ileum, inoculated with Neg Ctrl (F12K medium), collected at 15 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	intestinal loops inoculated with cell culture medium	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025322 extract 2	total RNA	P-GSE41835-3	ArrayExpress	GSM1025322 LE 2	Cy3: Control Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025322	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025322_10427_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025322_sample_table.txt norm	GSM1025322_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	intestinal loops inoculated with cell culture medium
GSM1025322 1	10429 Inf Data 15min S1::10427 Co Data 15min S1::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025322 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025322 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025322	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025322_10429_Inf_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025322_sample_table.txt norm	GSM1025322_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel
GSM1025322 1	10429 Inf Data 15min S1::10427 Co Data 15min S1::t=15	Distal ileum, inoculated with Bmel 16M collected at 15 min, calf 1 (vs Uref_Cy5)	Bmel Infected vs Control 15 min PI, Calf 1	Outbred male calf, 3 to 6 month old	Bos taurus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9913	Distal ileum, inoculated with Bmel	bovine reference RNA	P-GSE41835-2	ArrayExpress	GSM1025322 extract 1	total RNA	P-GSE41835-3	ArrayExpress	GSM1025322 LE 1	Cy3: Infected Array; Cy5: Uref	P-GSE41835-4	ArrayExpress	GSM1025322	A-GEOD-2853	ArrayExpress	array assay	P-GSE41835-5	ArrayExpress	GSM1025322_10427_Co_Data.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.raw.1.zip	P-GSE41835-1	ArrayExpress	GSM1025322_sample_table.txt norm	GSM1025322_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41835/E-GEOD-41835.processed.1.zip	Distal ileum, inoculated with Bmel