Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell line]	Characteristics [cell type]	Characteristics [infection]	Characteristics [organism]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [INFECTION]	FactorValue [TIME]
GSM1023609 1	A7 12h  rTGEV-delta7 infected cells, 12 hpi rep3	A7 12h 3  rTGEV-delta7 infected cells, 12 hpi	rTGEV-delta7 infected cells, 12 hpi, rep3	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023609 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023609 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023609	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023609_A7_12h_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023609_sample_table.txt norm	GSM1023609_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	12 h
GSM1023608 1	A7 12h  rTGEV-delta7 infected cells, 12 hpi rep2	A7 12h 2  rTGEV-delta7 infected cells, 12 hpi	rTGEV-delta7 infected cells, 12 hpi, rep2	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023608 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023608 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023608	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023608_A7_12h_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023608_sample_table.txt norm	GSM1023608_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	12 h
GSM1023607 1	A7 12h  rTGEV-delta7 infected cells, 12 hpi rep1	A7 12h 1  rTGEV-delta7 infected cells, 12 hpi	rTGEV-delta7 infected cells, 12 hpi, rep1	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023607 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023607 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023607	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023607_A7_12h_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023607_sample_table.txt norm	GSM1023607_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	12 h
GSM1023606 1	WT 12h  rTGEV-wt infected cells, 12 hpi rep3	WT 12h 3  rTGEV-wt infected cells, 12 hpi	rTGEV-wt infected cells, 12 hpi, rep3	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023606 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023606 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023606	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023606_WT_12h_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023606_sample_table.txt norm	GSM1023606_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	12 h
GSM1023605 1	WT 12h  rTGEV-wt infected cells, 12 hpi rep2	WT 12h 2  rTGEV-wt infected cells, 12 hpi	rTGEV-wt infected cells, 12 hpi, rep2	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023605 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023605 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023605	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023605_WT_12h_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023605_sample_table.txt norm	GSM1023605_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	12 h
GSM1023604 1	WT 12h  rTGEV-wt infected cells, 12 hpi rep1	WT 12h 1  rTGEV-wt infected cells, 12 hpi	rTGEV-wt infected cells, 12 hpi, rep1	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023604 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023604 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023604	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023604_WT_12h_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023604_sample_table.txt norm	GSM1023604_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	12 h
GSM1023603 1	A7 6h  rTGEV-delta7 infected cells, 6 hpi rep3	A7 6h 3  rTGEV-delta7 infected cells, 6 hpi	rTGEV-delta7 infected cells, 6 hpi, rep3	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023603 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023603 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023603	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023603_A7_6h_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023603_sample_table.txt norm	GSM1023603_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	6 h
GSM1023602 1	A7 6h  rTGEV-delta7 infected cells, 6 hpi rep2	A7 6h 2  rTGEV-delta7 infected cells, 6 hpi	rTGEV-delta7 infected cells, 6 hpi, rep2	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023602 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023602 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023602	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023602_A7_6h_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023602_sample_table.txt norm	GSM1023602_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	6 h
GSM1023601 1	A7 6h  rTGEV-delta7 infected cells, 6 hpi rep1	A7 6h 1  rTGEV-delta7 infected cells, 6 hpi	rTGEV-delta7 infected cells, 6 hpi, rep1	ST	swine testis (ST) cells	rTGEV-delta7	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023601 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023601 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023601	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023601_A7_6h_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023601_sample_table.txt norm	GSM1023601_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-delta7	6 h
GSM1023600 1	WT 6h rTGEV-wt infected cells, 6 hpi rep3	WT 6h 3  rTGEV-wt infected cells, 6 hpi	rTGEV-wt infected cells, 6 hpi, rep3	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023600 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023600 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023600	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023600_WT_6h_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023600_sample_table.txt norm	GSM1023600_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	6 h
GSM1023599 1	WT 6h rTGEV-wt infected cells, 6 hpi rep2	WT 6h 2  rTGEV-wt infected cells, 6 hpi	rTGEV-wt infected cells, 6 hpi, rep2	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023599 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023599 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023599	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023599_WT_6h_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023599_sample_table.txt norm	GSM1023599_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	6 h
GSM1023598 1	WT 6h rTGEV-wt infected cells, 6 hpi rep1	WT 6h 1  rTGEV-wt infected cells, 6 hpi	rTGEV-wt infected cells, 6 hpi, rep1	ST	swine testis (ST) cells	rTGEV-wt	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023598 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023598 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023598	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023598_WT_6h_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023598_sample_table.txt norm	GSM1023598_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	rTGEV-wt	6 h
GSM1023597 1	Mock Non infected cells rep3	Mock 3  Non infected cells	Non infected cells, rep3	ST	swine testis (ST) cells	mock	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023597 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023597 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023597	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023597_Mock_3.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023597_sample_table.txt norm	GSM1023597_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	mock	not specified
GSM1023596 1	Mock Non infected cells rep2	Mock 2  Non infected cells	Non infected cells, rep2	ST	swine testis (ST) cells	mock	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023596 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023596 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023596	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023596_Mock_2.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023596_sample_table.txt norm	GSM1023596_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	mock	not specified
GSM1023595 1	Mock Non infected cells rep1	Mock 1  Non infected cells	Non infected cells, rep1	ST	swine testis (ST) cells	mock	Sus scrofa	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9823	P-GSE41756-2	ArrayExpress	P-GSE41756-3	ArrayExpress	GSM1023595 extract 1	total RNA	P-GSE41756-4	ArrayExpress	GSM1023595 LE 1	biotin	P-GSE41756-5	ArrayExpress	GSM1023595	A-AFFY-75	ArrayExpress	array assay	P-GSE41756-6	ArrayExpress	GSM1023595_Mock_1.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.raw.1.zip	P-GSE41756-1	ArrayExpress	GSM1023595_sample_table.txt norm	GSM1023595_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41756/E-GEOD-41756.processed.1.zip	mock	not specified