Source Name Comment [Sample_source_name] Comment [Sample_title] Characteristics [age] Characteristics [ecotype] Characteristics [genotype] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [ECOTYPE] FactorValue [GENOTYPE] GSM1134763 1 Trifoliolate leaves from three-week-old plants R_11283-MethylC-Seq 3 weeks R_11283 RIL_11283 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134763 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134763 SRX276045 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847686 SRR847686 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847686/SRR847686.fastq.gz GSM1134763_allc_11283.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.1.zip R_11283 RIL_11283 GSM1134762 1 Trifoliolate leaves from three-week-old plants R_11282-MethylC-Seq 3 weeks R_11282 RIL_11282 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134762 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134762 SRX276044 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847685 SRR847685 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847685/SRR847685.fastq.gz GSM1134762_allc_11282.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.2.zip R_11282 RIL_11282 GSM1134761 1 Trifoliolate leaves from three-week-old plants R_11281-MethylC-Seq 3 weeks R_11281 RIL_11281 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134761 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134761 SRX276043 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847684 SRR847684 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847684/SRR847684.fastq.gz GSM1134761_allc_11281.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.3.zip R_11281 RIL_11281 GSM1134760 1 Trifoliolate leaves from three-week-old plants R_11280-MethylC-Seq 3 weeks R_11280 RIL_11280 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134760 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134760 SRX276042 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847683 SRR847683 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847683/SRR847683.fastq.gz GSM1134760_allc_11280.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.4.zip R_11280 RIL_11280 GSM1134759 1 Trifoliolate leaves from three-week-old plants R_11279-MethylC-Seq 3 weeks R_11279 RIL_11279 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134759 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134759 SRX276041 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847682 SRR847682 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847682/SRR847682.fastq.gz GSM1134759_allc_11279.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.5.zip R_11279 RIL_11279 GSM1134758 1 Trifoliolate leaves from three-week-old plants R_11278-MethylC-Seq 3 weeks R_11278 RIL_11278 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134758 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134758 SRX276040 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847681 SRR847681 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847681/SRR847681.fastq.gz GSM1134758_allc_11278.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.6.zip R_11278 RIL_11278 GSM1134757 1 Trifoliolate leaves from three-week-old plants R_11277-MethylC-Seq 3 weeks R_11277 RIL_11277 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134757 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134757 SRX276039 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847680 SRR847680 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847680/SRR847680.fastq.gz GSM1134757_allc_11277.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.7.zip R_11277 RIL_11277 GSM1134756 1 Trifoliolate leaves from three-week-old plants R_11276-MethylC-Seq 3 weeks R_11276 RIL_11276 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134756 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134756 SRX276038 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847679 SRR847679 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847679/SRR847679.fastq.gz GSM1134756_allc_11276.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.8.zip R_11276 RIL_11276 GSM1134755 1 Trifoliolate leaves from three-week-old plants R_11275-MethylC-Seq 3 weeks R_11275 RIL_11275 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134755 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134755 SRX276037 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847678 SRR847678 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847678/SRR847678.fastq.gz GSM1134755_allc_11275.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.9.zip R_11275 RIL_11275 GSM1134754 1 Trifoliolate leaves from three-week-old plants R_11274-MethylC-Seq 3 weeks R_11274 RIL_11274 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134754 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134754 SRX276036 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847677 SRR847677 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847677/SRR847677.fastq.gz GSM1134754_allc_11274.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.10.zip R_11274 RIL_11274 GSM1134753 1 Trifoliolate leaves from three-week-old plants R_11273-MethylC-Seq 3 weeks R_11273 RIL_11273 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134753 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134753 SRX276035 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847676 SRR847676 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847676/SRR847676.fastq.gz GSM1134753_allc_11273.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.11.zip R_11273 RIL_11273 GSM1134752 1 Trifoliolate leaves from three-week-old plants R_11271-MethylC-Seq 3 weeks R_11271 RIL_11271 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134752 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134752 SRX276034 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847675 SRR847675 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847675/SRR847675.fastq.gz GSM1134752_allc_11271.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.12.zip R_11271 RIL_11271 GSM1134751 1 Trifoliolate leaves from three-week-old plants R_11270-MethylC-Seq 3 weeks R_11270 RIL_11270 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134751 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134751 SRX276033 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847674 SRR847674 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847674/SRR847674.fastq.gz GSM1134751_allc_11270.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.13.zip R_11270 RIL_11270 GSM1134750 1 Trifoliolate leaves from three-week-old plants R_11269-MethylC-Seq 3 weeks R_11269 RIL_11269 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134750 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134750 SRX276032 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847673 SRR847673 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847673/SRR847673.fastq.gz GSM1134750_allc_11269.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.14.zip R_11269 RIL_11269 GSM1134749 1 Trifoliolate leaves from three-week-old plants R_11267-MethylC-Seq 3 weeks R_11267 RIL_11267 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134749 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134749 SRX276031 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847672 SRR847672 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847672/SRR847672.fastq.gz GSM1134749_allc_11267.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.15.zip R_11267 RIL_11267 GSM1134748 1 Trifoliolate leaves from three-week-old plants R_11266-MethylC-Seq 3 weeks R_11266 RIL_11266 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134748 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134748 SRX276030 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847671 SRR847671 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847671/SRR847671.fastq.gz GSM1134748_allc_11266.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.16.zip R_11266 RIL_11266 GSM1134747 1 Trifoliolate leaves from three-week-old plants R_11265-MethylC-Seq 3 weeks R_11265 RIL_11265 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134747 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134747 SRX276029 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847670 SRR847670 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847670/SRR847670.fastq.gz GSM1134747_allc_11265.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.17.zip R_11265 RIL_11265 GSM1134746 1 Trifoliolate leaves from three-week-old plants R_11264-MethylC-Seq 3 weeks R_11264 RIL_11264 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134746 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134746 SRX276028 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847669 SRR847669 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847669/SRR847669.fastq.gz GSM1134746_allc_11264.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.18.zip R_11264 RIL_11264 GSM1134745 1 Trifoliolate leaves from three-week-old plants R_11263-MethylC-Seq 3 weeks R_11263 RIL_11263 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134745 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134745 SRX276027 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847668 SRR847668 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847668/SRR847668.fastq.gz GSM1134745_allc_11263.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.19.zip R_11263 RIL_11263 GSM1134744 1 Trifoliolate leaves from three-week-old plants R_11262-MethylC-Seq 3 weeks R_11262 RIL_11262 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134744 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134744 SRX276026 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847667 SRR847667 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847667/SRR847667.fastq.gz GSM1134744_allc_11262.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.20.zip R_11262 RIL_11262 GSM1134743 1 Trifoliolate leaves from three-week-old plants R_11261-MethylC-Seq 3 weeks R_11261 RIL_11261 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134743 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134743 SRX276025 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847666 SRR847666 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847666/SRR847666.fastq.gz GSM1134743_allc_11261.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.21.zip R_11261 RIL_11261 GSM1134742 1 Trifoliolate leaves from three-week-old plants R_11260-MethylC-Seq 3 weeks R_11260 RIL_11260 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134742 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134742 SRX276024 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847665 SRR847665 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847665/SRR847665.fastq.gz GSM1134742_allc_11260.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.22.zip R_11260 RIL_11260 GSM1134741 1 Trifoliolate leaves from three-week-old plants R_11259-MethylC-Seq 3 weeks R_11259 RIL_11259 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134741 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134741 SRX276023 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847664 SRR847664 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847664/SRR847664.fastq.gz GSM1134741_allc_11259.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.23.zip R_11259 RIL_11259 GSM1134740 1 Trifoliolate leaves from three-week-old plants R_11258-MethylC-Seq 3 weeks R_11258 RIL_11258 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134740 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134740 SRX276022 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847663 SRR847663 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847663/SRR847663.fastq.gz GSM1134740_allc_11258.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.24.zip R_11258 RIL_11258 GSM1134739 1 Trifoliolate leaves from three-week-old plants R_11257-MethylC-Seq 3 weeks R_11257 RIL_11257 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134739 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134739 SRX276021 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847662 SRR847662 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847662/SRR847662.fastq.gz GSM1134739_allc_11257.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.25.zip R_11257 RIL_11257 GSM1134738 1 Trifoliolate leaves from three-week-old plants R_11256-MethylC-Seq 3 weeks R_11256 RIL_11256 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134738 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134738 SRX276020 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847661 SRR847661 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847661/SRR847661.fastq.gz GSM1134738_allc_11256.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.26.zip R_11256 RIL_11256 GSM1134737 1 Trifoliolate leaves from three-week-old plants R_11255-MethylC-Seq 3 weeks R_11255 RIL_11255 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134737 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134737 SRX276019 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847660 SRR847660 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847660/SRR847660.fastq.gz GSM1134737_allc_11255.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.27.zip R_11255 RIL_11255 GSM1134736 1 Trifoliolate leaves from three-week-old plants R_11253-MethylC-Seq 3 weeks R_11253 RIL_11253 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134736 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134736 SRX276018 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847659 SRR847659 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847659/SRR847659.fastq.gz GSM1134736_allc_11253.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.28.zip R_11253 RIL_11253 GSM1134735 1 Trifoliolate leaves from three-week-old plants R_11252-MethylC-Seq 3 weeks R_11252 RIL_11252 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134735 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134735 SRX276017 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847658 SRR847658 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847658/SRR847658.fastq.gz GSM1134735_allc_11252.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.29.zip R_11252 RIL_11252 GSM1134734 1 Trifoliolate leaves from three-week-old plants R_11251-MethylC-Seq 3 weeks R_11251 RIL_11251 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134734 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134734 SRX276016 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847657 SRR847657 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847657/SRR847657.fastq.gz GSM1134734_allc_11251.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.30.zip R_11251 RIL_11251 GSM1134733 1 Trifoliolate leaves from three-week-old plants R_11250-MethylC-Seq 3 weeks R_11250 RIL_11250 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134733 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134733 SRX276015 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847656 SRR847656 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847656/SRR847656.fastq.gz GSM1134733_allc_11250.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.31.zip R_11250 RIL_11250 GSM1134732 1 Trifoliolate leaves from three-week-old plants R_11249-MethylC-Seq 3 weeks R_11249 RIL_11249 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134732 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134732 SRX276014 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847655 SRR847655 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847655/SRR847655.fastq.gz GSM1134732_allc_11249.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.32.zip R_11249 RIL_11249 GSM1134731 1 Trifoliolate leaves from three-week-old plants R_11248-MethylC-Seq 3 weeks R_11248 RIL_11248 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134731 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134731 SRX276013 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847654 SRR847654 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847654/SRR847654.fastq.gz GSM1134731_allc_11248.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.33.zip R_11248 RIL_11248 GSM1134730 1 Trifoliolate leaves from three-week-old plants R_11247-MethylC-Seq 3 weeks R_11247 RIL_11247 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134730 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134730 SRX276012 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847653 SRR847653 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847653/SRR847653.fastq.gz GSM1134730_allc_11247.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.34.zip R_11247 RIL_11247 GSM1134729 1 Trifoliolate leaves from three-week-old plants R_11246-MethylC-Seq 3 weeks R_11246 RIL_11246 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134729 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134729 SRX276011 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847652 SRR847652 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847652/SRR847652.fastq.gz GSM1134729_allc_11246.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.35.zip R_11246 RIL_11246 GSM1134728 1 Trifoliolate leaves from three-week-old plants R_11245-MethylC-Seq 3 weeks R_11245 RIL_11245 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134728 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134728 SRX276010 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847651 SRR847651 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847651/SRR847651.fastq.gz GSM1134728_allc_11245.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.36.zip R_11245 RIL_11245 GSM1134727 1 Trifoliolate leaves from three-week-old plants R_11244-MethylC-Seq 3 weeks R_11244 RIL_11244 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134727 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134727 SRX276009 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847650 SRR847650 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847650/SRR847650.fastq.gz GSM1134727_allc_11244.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.37.zip R_11244 RIL_11244 GSM1134726 1 Trifoliolate leaves from three-week-old plants R_11243-MethylC-Seq 3 weeks R_11243 RIL_11243 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134726 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134726 SRX276008 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847649 SRR847649 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847649/SRR847649.fastq.gz GSM1134726_allc_11243.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.38.zip R_11243 RIL_11243 GSM1134725 1 Trifoliolate leaves from three-week-old plants R_11242-MethylC-Seq 3 weeks R_11242 RIL_11242 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134725 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134725 SRX276007 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847648 SRR847648 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847648/SRR847648.fastq.gz GSM1134725_allc_11242.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.39.zip R_11242 RIL_11242 GSM1134724 1 Trifoliolate leaves from three-week-old plants R_11241-MethylC-Seq 3 weeks R_11241 RIL_11241 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134724 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134724 SRX276006 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847647 SRR847647 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847647/SRR847647.fastq.gz GSM1134724_allc_11241.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.40.zip R_11241 RIL_11241 GSM1134723 1 Trifoliolate leaves from three-week-old plants R_11240-MethylC-Seq 3 weeks R_11240 RIL_11240 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134723 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134723 SRX276005 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847646 SRR847646 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847646/SRR847646.fastq.gz GSM1134723_allc_11240.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.41.zip R_11240 RIL_11240 GSM1134722 1 Trifoliolate leaves from three-week-old plants R_11239-MethylC-Seq 3 weeks R_11239 RIL_11239 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134722 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134722 SRX276004 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847645 SRR847645 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847645/SRR847645.fastq.gz GSM1134722_allc_11239.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.42.zip R_11239 RIL_11239 GSM1134721 1 Trifoliolate leaves from three-week-old plants R_11238-MethylC-Seq 3 weeks R_11238 RIL_11238 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134721 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134721 SRX276003 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847644 SRR847644 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847644/SRR847644.fastq.gz GSM1134721_allc_11238.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.43.zip R_11238 RIL_11238 GSM1134720 1 Trifoliolate leaves from three-week-old plants R_11237-MethylC-Seq 3 weeks R_11237 RIL_11237 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134720 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134720 SRX276002 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847643 SRR847643 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847643/SRR847643.fastq.gz GSM1134720_allc_11237.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.44.zip R_11237 RIL_11237 GSM1134719 1 Trifoliolate leaves from three-week-old plants R_11236-MethylC-Seq 3 weeks R_11236 RIL_11236 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134719 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134719 SRX276001 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847642 SRR847642 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847642/SRR847642.fastq.gz GSM1134719_allc_11236.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.45.zip R_11236 RIL_11236 GSM1134718 1 Trifoliolate leaves from three-week-old plants R_11234-MethylC-Seq 3 weeks R_11234 RIL_11234 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134718 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134718 SRX276000 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847641 SRR847641 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847641/SRR847641.fastq.gz GSM1134718_allc_11234.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.46.zip R_11234 RIL_11234 GSM1134717 1 Trifoliolate leaves from three-week-old plants R_11233-MethylC-Seq 3 weeks R_11233 RIL_11233 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134717 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134717 SRX275999 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847640 SRR847640 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847640/SRR847640.fastq.gz GSM1134717_allc_11233.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.47.zip R_11233 RIL_11233 GSM1134716 1 Trifoliolate leaves from three-week-old plants R_11232-MethylC-Seq 3 weeks R_11232 RIL_11232 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134716 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134716 SRX275998 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847639 SRR847639 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847639/SRR847639.fastq.gz GSM1134716_allc_11232.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.48.zip R_11232 RIL_11232 GSM1134715 1 Trifoliolate leaves from three-week-old plants R_11231-MethylC-Seq 3 weeks R_11231 RIL_11231 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134715 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134715 SRX275997 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847638 SRR847638 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847638/SRR847638.fastq.gz GSM1134715_allc_11231.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.49.zip R_11231 RIL_11231 GSM1134714 1 Trifoliolate leaves from three-week-old plants R_11230-MethylC-Seq 3 weeks R_11230 RIL_11230 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134714 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134714 SRX275996 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847637 SRR847637 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847637/SRR847637.fastq.gz GSM1134714_allc_11230.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.50.zip R_11230 RIL_11230 GSM1134713 1 Trifoliolate leaves from three-week-old plants R_11228-MethylC-Seq 3 weeks R_11228 RIL_11228 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134713 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134713 SRX275995 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847636 SRR847636 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847636/SRR847636.fastq.gz GSM1134713_allc_11228.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.51.zip R_11228 RIL_11228 GSM1134712 1 Trifoliolate leaves from three-week-old plants R_11225-MethylC-Seq 3 weeks R_11225 RIL_11225 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134712 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134712 SRX275994 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847635 SRR847635 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847635/SRR847635.fastq.gz GSM1134712_allc_11225.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.52.zip R_11225 RIL_11225 GSM1134711 1 Trifoliolate leaves from three-week-old plants R_11224-MethylC-Seq 3 weeks R_11224 RIL_11224 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134711 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134711 SRX275993 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847634 SRR847634 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847634/SRR847634.fastq.gz GSM1134711_allc_11224.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.53.zip R_11224 RIL_11224 GSM1134710 1 Trifoliolate leaves from three-week-old plants R_11223-MethylC-Seq 3 weeks R_11223 RIL_11223 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134710 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134710 SRX275992 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847633 SRR847633 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847633/SRR847633.fastq.gz GSM1134710_allc_11223.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.54.zip R_11223 RIL_11223 GSM1134709 1 Trifoliolate leaves from three-week-old plants R_11221-MethylC-Seq 3 weeks R_11221 RIL_11221 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134709 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134709 SRX275991 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847631 SRR847631 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847631/SRR847631.fastq.gz GSM1134709_allc_11221.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.55.zip R_11221 RIL_11221 GSM1134708 1 Trifoliolate leaves from three-week-old plants R_11220-MethylC-Seq 3 weeks R_11220 RIL_11220 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134708 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134708 SRX275990 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847630 SRR847630 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847630/SRR847630.fastq.gz GSM1134708_allc_11220.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.56.zip R_11220 RIL_11220 GSM1134707 1 Trifoliolate leaves from three-week-old plants R_11219-MethylC-Seq 3 weeks R_11219 RIL_11219 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134707 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134707 SRX275989 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847629 SRR847629 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847629/SRR847629.fastq.gz GSM1134707_allc_11219.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.57.zip R_11219 RIL_11219 GSM1134706 1 Trifoliolate leaves from three-week-old plants R_11218-MethylC-Seq 3 weeks R_11218 RIL_11218 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134706 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134706 SRX275988 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847628 SRR847628 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847628/SRR847628.fastq.gz GSM1134706_allc_11218.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.58.zip R_11218 RIL_11218 GSM1134705 1 Trifoliolate leaves from three-week-old plants R_11217-MethylC-Seq 3 weeks R_11217 RIL_11217 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134705 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134705 SRX275987 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847627 SRR847627 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847627/SRR847627.fastq.gz GSM1134705_allc_11217.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.59.zip R_11217 RIL_11217 GSM1134704 1 Trifoliolate leaves from three-week-old plants R_11216-MethylC-Seq 3 weeks R_11216 RIL_11216 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134704 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134704 SRX275986 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847626 SRR847626 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847626/SRR847626.fastq.gz GSM1134704_allc_11216.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.60.zip R_11216 RIL_11216 GSM1134703 1 Trifoliolate leaves from three-week-old plants R_11215-MethylC-Seq 3 weeks R_11215 RIL_11215 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134703 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134703 SRX275985 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847625 SRR847625 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847625/SRR847625.fastq.gz GSM1134703_allc_11215.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.61.zip R_11215 RIL_11215 GSM1134702 1 Trifoliolate leaves from three-week-old plants R_11214-MethylC-Seq 3 weeks R_11214 RIL_11214 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134702 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134702 SRX275984 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847624 SRR847624 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847624/SRR847624.fastq.gz GSM1134702_allc_11214.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.62.zip R_11214 RIL_11214 GSM1134701 1 Trifoliolate leaves from three-week-old plants R_11212-MethylC-Seq 3 weeks R_11212 RIL_11212 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134701 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134701 SRX275983 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847623 SRR847623 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847623/SRR847623.fastq.gz GSM1134701_allc_11212.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.63.zip R_11212 RIL_11212 GSM1134700 1 Trifoliolate leaves from three-week-old plants R_11211-MethylC-Seq 3 weeks R_11211 RIL_11211 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134700 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134700 SRX275982 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847622 SRR847622 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847622/SRR847622.fastq.gz GSM1134700_allc_11211.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.64.zip R_11211 RIL_11211 GSM1134699 1 Trifoliolate leaves from three-week-old plants R_11210-MethylC-Seq 3 weeks R_11210 RIL_11210 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134699 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134699 SRX275981 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847621 SRR847621 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847621/SRR847621.fastq.gz GSM1134699_allc_11210.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.65.zip R_11210 RIL_11210 GSM1134698 1 Trifoliolate leaves from three-week-old plants R_11209-MethylC-Seq 3 weeks R_11209 RIL_11209 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134698 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134698 SRX275980 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847620 SRR847620 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847620/SRR847620.fastq.gz GSM1134698_allc_11209.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.66.zip R_11209 RIL_11209 GSM1134697 1 Trifoliolate leaves from three-week-old plants R_11208-MethylC-Seq 3 weeks R_11208 RIL_11208 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134697 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134697 SRX275979 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847619 SRR847619 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847619/SRR847619.fastq.gz GSM1134697_allc_11208.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.67.zip R_11208 RIL_11208 GSM1134696 1 Trifoliolate leaves from three-week-old plants R_11206-MethylC-Seq 3 weeks R_11206 RIL_11206 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134696 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134696 SRX275978 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847618 SRR847618 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847618/SRR847618.fastq.gz GSM1134696_allc_11206.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.68.zip R_11206 RIL_11206 GSM1134695 1 Trifoliolate leaves from three-week-old plants R_11205-MethylC-Seq 3 weeks R_11205 RIL_11205 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134695 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134695 SRX275977 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847617 SRR847617 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847617/SRR847617.fastq.gz GSM1134695_allc_11205.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.69.zip R_11205 RIL_11205 GSM1134694 1 Trifoliolate leaves from three-week-old plants R_11202-MethylC-Seq 3 weeks R_11202 RIL_11202 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134694 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134694 SRX275976 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847616 SRR847616 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847616/SRR847616.fastq.gz GSM1134694_allc_11202.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.70.zip R_11202 RIL_11202 GSM1134693 1 Trifoliolate leaves from three-week-old plants R_11200-MethylC-Seq 3 weeks R_11200 RIL_11200 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134693 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134693 SRX275975 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847615 SRR847615 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847615/SRR847615.fastq.gz GSM1134693_allc_11200.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.71.zip R_11200 RIL_11200 GSM1134692 1 Trifoliolate leaves from three-week-old plants R_11199-MethylC-Seq 3 weeks R_11199 RIL_11199 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134692 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134692 SRX275974 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847614 SRR847614 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847614/SRR847614.fastq.gz GSM1134692_allc_11199.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.72.zip R_11199 RIL_11199 GSM1134691 1 Trifoliolate leaves from three-week-old plants R_11197-MethylC-Seq 3 weeks R_11197 RIL_11197 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134691 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134691 SRX275973 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847613 SRR847613 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847613/SRR847613.fastq.gz GSM1134691_allc_11197.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.73.zip R_11197 RIL_11197 GSM1134690 1 Trifoliolate leaves from three-week-old plants R_11196-MethylC-Seq 3 weeks R_11196 RIL_11196 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134690 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134690 SRX275972 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847612 SRR847612 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847612/SRR847612.fastq.gz GSM1134690_allc_11196.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.74.zip R_11196 RIL_11196 GSM1134689 1 Trifoliolate leaves from three-week-old plants R_11195-MethylC-Seq 3 weeks R_11195 RIL_11195 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134689 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134689 SRX275971 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847611 SRR847611 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847611/SRR847611.fastq.gz GSM1134689_allc_11195.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.75.zip R_11195 RIL_11195 GSM1134688 1 Trifoliolate leaves from three-week-old plants R_11194-MethylC-Seq 3 weeks R_11194 RIL_11194 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134688 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134688 SRX275970 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847610 SRR847610 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847610/SRR847610.fastq.gz GSM1134688_allc_11194.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.76.zip R_11194 RIL_11194 GSM1134687 1 Trifoliolate leaves from three-week-old plants R_11189-MethylC-Seq 3 weeks R_11189 RIL_11189 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134687 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134687 SRX275969 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847609 SRR847609 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847609/SRR847609.fastq.gz GSM1134687_allc_11189.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.77.zip R_11189 RIL_11189 GSM1134686 1 Trifoliolate leaves from three-week-old plants R_11188-MethylC-Seq 3 weeks R_11188 RIL_11188 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134686 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134686 SRX275968 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847608 SRR847608 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847608/SRR847608.fastq.gz GSM1134686_allc_11188.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.78.zip R_11188 RIL_11188 GSM1134685 1 Trifoliolate leaves from three-week-old plants R_11187-MethylC-Seq 3 weeks R_11187 RIL_11187 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134685 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134685 SRX275967 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847607 SRR847607 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847607/SRR847607.fastq.gz GSM1134685_allc_11187.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.79.zip R_11187 RIL_11187 GSM1134684 1 Trifoliolate leaves from three-week-old plants R_11186-MethylC-Seq 3 weeks R_11186 RIL_11186 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134684 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134684 SRX275966 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847606 SRR847606 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847606/SRR847606.fastq.gz GSM1134684_allc_11186.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.80.zip R_11186 RIL_11186 GSM1134683 1 Trifoliolate leaves from three-week-old plants R_11185-MethylC-Seq 3 weeks R_11185 RIL_11185 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134683 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134683 SRX275965 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847605 SRR847605 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847605/SRR847605.fastq.gz GSM1134683_allc_11185.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.81.zip R_11185 RIL_11185 GSM1024008 1 Trifoliolate leaves from three-week-old plants R-11272-MethylC-Seq 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024008 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024008 SRX200139 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605680 SRR605680 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605680/SRR605680.fastq.gz GSM1024008_mc_11272.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.82.zip R-11272 RIL-11272 GSM1024008 1 Trifoliolate leaves from three-week-old plants R-11272-MethylC-Seq 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024008 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024008 SRX200139 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605680 SRR605680 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605680/SRR605680.fastq.gz GSM1024008_allc_11272.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.83.zip R-11272 RIL-11272 GSM1024007 1 Trifoliolate leaves from three-week-old plants R-11268-MethylC-Seq 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024007 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024007 SRX200138 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605677 SRR605677 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605677/SRR605677.fastq.gz GSM1024007_allc_11268.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.84.zip R-11268 RIL-11268 GSM1024007 1 Trifoliolate leaves from three-week-old plants R-11268-MethylC-Seq 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024007 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024007 SRX200138 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605677 SRR605677 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605677/SRR605677.fastq.gz GSM1024007_mc_11268.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.85.zip R-11268 RIL-11268 GSM1024006 1 Trifoliolate leaves from three-week-old plants LDX-MethylC-Seq 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024006 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024006 SRX200137 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605674 SRR605674 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605674/SRR605674.fastq.gz GSM1024006_mc_LDX.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.86.zip LDX Parental LDX GSM1024006 1 Trifoliolate leaves from three-week-old plants LDX-MethylC-Seq 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024006 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024006 SRX200137 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605674 SRR605674 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605674/SRR605674.fastq.gz GSM1024006_allc_LDX.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.87.zip LDX Parental LDX GSM1024005 1 Trifoliolate leaves from three-week-old plants LD-MethylC-Seq 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024005 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024005 SRX200136 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605670 SRR605670 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605670/SRR605670.fastq.gz GSM1024005_mc_LD.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.88.zip LD Parental LD GSM1024005 1 Trifoliolate leaves from three-week-old plants LD-MethylC-Seq 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024005 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024005 SRX200136 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605670 SRR605670 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605670/SRR605670.fastq.gz GSM1024005_allc_LD.tsv ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41753/E-GEOD-41753.processed.89.zip LD Parental LD GSM1134709 1 Trifoliolate leaves from three-week-old plants R_11221-MethylC-Seq 3 weeks R_11221 RIL_11221 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1134709 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1134709 SRX275991 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-5 ArrayExpress SRR847632 SRR847632 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR847/SRR847632/SRR847632.fastq.gz R_11221 RIL_11221 GSM1024020 1 Trifoliolate leaves from three-week-old plants R-11272-RNA-Seq-rep3 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024020 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024020 SRX200151 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605694 SRR605694 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605694/SRR605694.fastq.gz R-11272 RIL-11272 GSM1024019 1 Trifoliolate leaves from three-week-old plants R-11272-RNA-Seq-rep2 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024019 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024019 SRX200150 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605693 SRR605693 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605693/SRR605693.fastq.gz R-11272 RIL-11272 GSM1024018 1 Trifoliolate leaves from three-week-old plants R-11272-RNA-Seq-rep1 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024018 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024018 SRX200149 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605692 SRR605692 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605692/SRR605692.fastq.gz R-11272 RIL-11272 GSM1024017 1 Trifoliolate leaves from three-week-old plants R-11268-RNA-Seq-rep3 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024017 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024017 SRX200148 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605691 SRR605691 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605691/SRR605691.fastq.gz R-11268 RIL-11268 GSM1024016 1 Trifoliolate leaves from three-week-old plants R-11268-RNA-Seq-rep2 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024016 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024016 SRX200147 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605690 SRR605690 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605690/SRR605690.fastq.gz R-11268 RIL-11268 GSM1024015 1 Trifoliolate leaves from three-week-old plants R-11268-RNA-Seq-rep1 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024015 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024015 SRX200146 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605689 SRR605689 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605689/SRR605689.fastq.gz R-11268 RIL-11268 GSM1024014 1 Trifoliolate leaves from three-week-old plants LDX-RNA-Seq-rep3 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024014 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024014 SRX200145 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605688 SRR605688 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605688/SRR605688.fastq.gz LDX Parental LDX GSM1024013 1 Trifoliolate leaves from three-week-old plants LDX-RNA-Seq-rep2 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024013 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024013 SRX200144 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605687 SRR605687 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605687/SRR605687.fastq.gz LDX Parental LDX GSM1024012 1 Trifoliolate leaves from three-week-old plants LDX-RNA-Seq-rep1 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024012 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024012 SRX200143 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605686 SRR605686 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605686/SRR605686.fastq.gz LDX Parental LDX GSM1024011 1 Trifoliolate leaves from three-week-old plants LD-RNA-Seq-rep3 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024011 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024011 SRX200142 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605685 SRR605685 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605685/SRR605685.fastq.gz LD Parental LD GSM1024010 1 Trifoliolate leaves from three-week-old plants LD-RNA-Seq-rep2 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024010 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024010 SRX200141 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605684 SRR605684 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605684/SRR605684.fastq.gz LD Parental LD GSM1024009 1 Trifoliolate leaves from three-week-old plants LD-RNA-Seq-rep1 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-4 ArrayExpress GSM1024009 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1024009 SRX200140 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605683 SRR605683 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605683/SRR605683.fastq.gz LD Parental LD GSM1024008 1 Trifoliolate leaves from three-week-old plants R-11272-MethylC-Seq 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024008 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024008 SRX200139 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605682 SRR605682 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605682/SRR605682.fastq.gz R-11272 RIL-11272 GSM1024008 1 Trifoliolate leaves from three-week-old plants R-11272-MethylC-Seq 3 weeks R-11272 RIL-11272 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024008 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024008 SRX200139 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605681 SRR605681 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605681/SRR605681.fastq.gz R-11272 RIL-11272 GSM1024007 1 Trifoliolate leaves from three-week-old plants R-11268-MethylC-Seq 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024007 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024007 SRX200138 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605679 SRR605679 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605679/SRR605679.fastq.gz R-11268 RIL-11268 GSM1024007 1 Trifoliolate leaves from three-week-old plants R-11268-MethylC-Seq 3 weeks R-11268 RIL-11268 Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024007 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024007 SRX200138 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605678 SRR605678 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605678/SRR605678.fastq.gz R-11268 RIL-11268 GSM1024006 1 Trifoliolate leaves from three-week-old plants LDX-MethylC-Seq 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024006 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024006 SRX200137 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605676 SRR605676 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605676/SRR605676.fastq.gz LDX Parental LDX GSM1024006 1 Trifoliolate leaves from three-week-old plants LDX-MethylC-Seq 3 weeks LDX Parental LDX Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024006 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024006 SRX200137 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605675 SRR605675 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605675/SRR605675.fastq.gz LDX Parental LDX GSM1024005 1 Trifoliolate leaves from three-week-old plants LD-MethylC-Seq 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024005 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024005 SRX200136 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605673 SRR605673 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605673/SRR605673.fastq.gz LD Parental LD GSM1024005 1 Trifoliolate leaves from three-week-old plants LD-MethylC-Seq 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024005 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024005 SRX200136 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605672 SRR605672 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605672/SRR605672.fastq.gz LD Parental LD GSM1024005 1 Trifoliolate leaves from three-week-old plants LD-MethylC-Seq 3 weeks LD Parental LD Glycine max EFO http://purl.obolibrary.org/obo/NCBITaxon_3847 Trifoliolate leaves P-GSE41753-1 ArrayExpress P-GSE41753-2 ArrayExpress GSM1024005 extract 1 Illumina HiSeq 2000 RANDOM genomic Bisulfite-Seq genomic DNA GSM1024005 SRX200136 Illumina HiSeq 2000 (Glycine max) sequencing assay P-GSE41753-3 ArrayExpress SRR605671 SRR605671 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR605/SRR605671/SRR605671.fastq.gz LD Parental LD