Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Characteristics [strain or line] Term Source REF Term Accession Number Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [TIME] FactorValue [TREATMENT] GSM1019859 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019859 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019859 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019859 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019859_Day14_RRV_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019859_sample_table.txt norm GSM1019859_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Rhesus rotavirus injection GSM1019858 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019858 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019858 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019858 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019858_Day14_RRV_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019858_sample_table.txt norm GSM1019858_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Rhesus rotavirus injection GSM1019857 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 14 after rhusus rotvirus challenge mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019857 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019857 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019857 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019857_Day14_RRV_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019857_sample_table.txt norm GSM1019857_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Rhesus rotavirus injection GSM1019856 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019856 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019856 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019856 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019856_Day14_NS_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019856_sample_table.txt norm GSM1019856_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Normal saline injection GSM1019855 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019855 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019855 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019855 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019855_Day14_NS_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019855_sample_table.txt norm GSM1019855_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Normal saline injection GSM1019854 1 Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 14 after normal saline injection mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019854 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019854 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019854 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019854_Day14_NS_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019854_sample_table.txt norm GSM1019854_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 14 days Normal saline injection GSM1019853 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019853 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019853 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019853 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019853_Day7_RRV_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019853_sample_table.txt norm GSM1019853_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Rhesus rotavirus injection GSM1019852 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019852 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019852 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019852 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019852_Day7_RRV_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019852_sample_table.txt norm GSM1019852_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Rhesus rotavirus injection GSM1019851 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 7 after rhusus rotvirus challenge mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019851 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019851 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019851 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019851_Day7_RRV_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019851_sample_table.txt norm GSM1019851_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Rhesus rotavirus injection GSM1019850 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019850 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019850 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019850 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019850_Day7_NS_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019850_sample_table.txt norm GSM1019850_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Normal saline injection GSM1019849 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019849 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019849 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019849 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019849_Day7_NS_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019849_sample_table.txt norm GSM1019849_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Normal saline injection GSM1019848 1 Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 7 after normal saline injection mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019848 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019848 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019848 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019848_Day7_NS_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019848_sample_table.txt norm GSM1019848_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 7 days Normal saline injection GSM1019847 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019847 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019847 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019847 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019847_Day3_RRV_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019847_sample_table.txt norm GSM1019847_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Rhesus rotavirus injection GSM1019846 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019846 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019846 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019846 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019846_Day3_RRV_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019846_sample_table.txt norm GSM1019846_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Rhesus rotavirus injection GSM1019845 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge Extrahepatic Bileduct and gallbladder en bloc at day 3 after rhusus rotvirus challenge mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019845 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019845 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019845 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019845_Day3_RRV_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019845_sample_table.txt norm GSM1019845_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Rhesus rotavirus injection GSM1019844 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection mRNA rep3 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019844 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019844 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019844 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019844_Day3_NS_3.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019844_sample_table.txt norm GSM1019844_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Normal saline injection GSM1019843 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection mRNA rep2 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019843 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019843 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019843 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019843_Day3_NS_2.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019843_sample_table.txt norm GSM1019843_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Normal saline injection GSM1019842 1 Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection Extrahepatic Bileduct and gallbladder en bloc at day 3 after normal saline injection mRNA rep1 Mus musculus EFO http://purl.obolibrary.org/obo/NCBITaxon_10090 Extrahepatic Bileduct and gallbladder BALB/c EFO EFO_0000602 P-GSE41595-4 ArrayExpress P-GSE41595-3 ArrayExpress P-GSE41595-9 ArrayExpress GSM1019842 extract 1 total RNA P-GSE41595-10 ArrayExpress GSM1019842 LE 1 Biotin P-GSE41595-11 ArrayExpress GSM1019842 A-AFFY-130 ArrayExpress array assay P-GSE41595-12 ArrayExpress GSM1019842_Day3_NS_1.CEL ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.raw.1.zip P-GSE41595-2 ArrayExpress GSM1019842_sample_table.txt norm GSM1019842_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-41595/E-GEOD-41595.processed.1.zip 3 days Normal saline injection