Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Protocol REF	Term Source REF	Extract Name	Comment [INSTRUMENT_MODEL]	Comment [LIBRARY_SELECTION]	Comment [LIBRARY_SOURCE]	Comment [LIBRARY_STRATEGY]	Material Type	Assay Name	Comment [ENA_EXPERIMENT]	Comment [Platform_title]	Technology Type	Protocol REF	Term Source REF	Scan Name	Comment [ENA_RUN]	Comment [FASTQ_URI]	FactorValue [CELL TYPE]	FactorValue [ORGANISM PART]	Term Source REF	Term Accession Number
GSM968734 1	FACS sorted FAP- embryonic cells grown for 3 passages and resorted to confirm FAP-	FAP negative MEFs	FAP negative MEFs biological replicate 2	FACS sorted FAP- cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	FAP negative MEFs	  	  	P-GSE39438-1	ArrayExpress	GSM968734 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968734	SRX160730	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524706	SRR524706	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524706/SRR524706.fastq.gz	FACS sorted FAP- cells	FAP negative MEFs	  	        
GSM968733 1	FACS sorted FAP- embryonic cells grown for 3 passages and resorted to confirm FAP-	FAP negative MEFs	FAP negative MEFs biological replicate 1	FACS sorted FAP- cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	FAP negative MEFs	  	  	P-GSE39438-1	ArrayExpress	GSM968733 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968733	SRX160729	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524705	SRR524705	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524705/SRR524705.fastq.gz	FACS sorted FAP- cells	FAP negative MEFs	  	        
GSM968732 1	FACS sorted FAP+ cells from dissociated pancreas	Pancreatic stellate cells	Pancreatic stellate cells biological replicate 2	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Pancreatic stellate cells	  	  	P-GSE39438-1	ArrayExpress	GSM968732 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968732	SRX160728	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524704	SRR524704	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524704/SRR524704.fastq.gz	FACS sorted FAP+ cells	Pancreatic stellate cells	  	        
GSM968731 1	FACS sorted FAP+ cells from dissociated pancreas	Pancreatic stellate cells	Pancreatic stellate cells biological replicate 1	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Pancreatic stellate cells	  	  	P-GSE39438-1	ArrayExpress	GSM968731 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968731	SRX160727	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524703	SRR524703	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524703/SRR524703.fastq.gz	FACS sorted FAP+ cells	Pancreatic stellate cells	  	        
GSM968730 1	FACS sorted FAP+ cells from dissociated skeletal muscle	Skeletal muscle	Skeletal Muscle biological replicate 2	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	skeletal muscle	EFO	http://purl.org/obo/owl/CL#CL_0000188	P-GSE39438-1	ArrayExpress	GSM968730 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968730	SRX160726	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524702	SRR524702	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524702/SRR524702.fastq.gz	FACS sorted FAP+ cells	skeletal muscle	EFO	http://purl.org/obo/owl/CL#CL_0000188
GSM968729 1	FACS sorted FAP+ cells from dissociated skeletal muscle	Skeletal muscle	Skeletal Muscle biological replicate 1	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	skeletal muscle	EFO	http://purl.org/obo/owl/CL#CL_0000188	P-GSE39438-1	ArrayExpress	GSM968729 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968729	SRX160725	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524701	SRR524701	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524701/SRR524701.fastq.gz	FACS sorted FAP+ cells	skeletal muscle	EFO	http://purl.org/obo/owl/CL#CL_0000188
GSM968728 1	FACS sorted FAP+ cells from dissociated visceral adipose	Visceral adipose tissue	Visceral Adipose biological replicate 2	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Visceral adipose tissue	  	  	P-GSE39438-1	ArrayExpress	GSM968728 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968728	SRX160724	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524700	SRR524700	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524700/SRR524700.fastq.gz	FACS sorted FAP+ cells	Visceral adipose tissue	  	        
GSM968727 1	FACS sorted FAP+ cells from dissociated visceral adipose	Visceral adipose tissue	Visceral Adipose biological replicate 1	FACS sorted FAP+ cells	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	Visceral adipose tissue	  	  	P-GSE39438-1	ArrayExpress	GSM968727 extract 1	Illumina Genome Analyzer II	cDNA	transcriptomic	RNA-Seq	total RNA	GSM968727	SRX160723	Illumina Genome Analyzer II (Mus musculus)	sequencing assay	P-GSE39438-2	ArrayExpress	SRR524699	SRR524699	ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR524/SRR524699/SRR524699.fastq.gz	FACS sorted FAP+ cells	Visceral adipose tissue