Source Name Comment [ENA_SAMPLE] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [developmental stage] Term Source REF Term Accession Number Characteristics [organism] Term Source REF Term Accession Number Characteristics [organism part] Term Source REF Term Accession Number Characteristics [strain] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Comment [ENA_EXPERIMENT] Comment [Platform_title] Technology Type Protocol REF Term Source REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [DEVELOPMENTAL STAGE] Term Source REF Term Accession Number FactorValue [ORGANISM PART] Term Source REF Term Accession Number FactorValue [STRAIN] GSM1261349 1 SRS500417 FAIRE-seq larval_cns_faire_rep1: AGATGGT larval_cns_faire_rep2: GATCTTG larval_cns_faire_rep3: TCAGGAC 3rd instar larval central nervous system larval_cns_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261349 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261349 SRX375140 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027611 SRR1027611 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/001/SRR1027611/SRR1027611.fastq.gz GSM1261349_larval_cns_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp GSM1261349 1 SRS500417 FAIRE-seq larval_cns_faire_rep1: AGATGGT larval_cns_faire_rep2: GATCTTG larval_cns_faire_rep3: TCAGGAC 3rd instar larval central nervous system larval_cns_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261349 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261349 SRX375140 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027611 SRR1027611 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/001/SRR1027611/SRR1027611.fastq.gz GSM1261349_larval_cns_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp GSM1261348 1 SRS500416 FAIRE-seq eye-antenna_disc_faire_rep1: CACGTCG eye-antenna_disc_faire_rep2: GTTAATC eye-antenna_disc_faire_rep3: ACAGTTG 3rd instar larval imaginal disc eye-antenna_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 eye-antennal disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261348 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261348 SRX375139 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027608 SRR1027608 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/008/SRR1027608/SRR1027608.fastq.gz GSM1261348_eye-antennal_disc_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 eye-antennal disc y;cn,bw,sp GSM1261348 1 SRS500416 FAIRE-seq eye-antenna_disc_faire_rep1: CACGTCG eye-antenna_disc_faire_rep2: GTTAATC eye-antenna_disc_faire_rep3: ACAGTTG 3rd instar larval imaginal disc eye-antenna_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 eye-antennal disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261348 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261348 SRX375139 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027608 SRR1027608 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/008/SRR1027608/SRR1027608.fastq.gz GSM1261348_eye-antennal_disc_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 eye-antennal disc y;cn,bw,sp GSM948720 1 SRS346310 FAIRE-seq pharate_wing_faire_rep1 pharate_wing_faire_rep2 pharate appendage pharate_wing_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate wing y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948720 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948720 SRX155030 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514074 SRR514074 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514074/SRR514074.fastq.gz GSM948720_pharate_wing_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult pharate wing y;cn,bw,sp GSM948720 1 SRS346310 FAIRE-seq pharate_wing_faire_rep1 pharate_wing_faire_rep2 pharate appendage pharate_wing_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate wing y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948720 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948720 SRX155030 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514074 SRR514074 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514074/SRR514074.fastq.gz GSM948720_pharate_wing_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult pharate wing y;cn,bw,sp GSM948719 1 SRS346309 FAIRE-seq pharate_haltere_faire_rep1 pharate_haltere_faire_rep2 pharate appendage pharate_haltere_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948719 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948719 SRX155029 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514070 SRR514070 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514070/SRR514070.fastq.gz GSM948719_pharate_haltere_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult pharate haltere y;cn,bw,sp GSM948719 1 SRS346309 FAIRE-seq pharate_haltere_faire_rep1 pharate_haltere_faire_rep2 pharate appendage pharate_haltere_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948719 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948719 SRX155029 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514070 SRR514070 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514070/SRR514070.fastq.gz GSM948719_pharate_haltere_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult pharate haltere y;cn,bw,sp GSM948718 1 SRS346308 FAIRE-seq pharate_T3leg_faire_rep1 pharate_T3leg_faire_rep2 pharate appendage pharate_T3leg_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948718 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948718 SRX155028 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514067 SRR514067 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514067/SRR514067.fastq.gz GSM948718_pharate_T3leg_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM948718 1 SRS346308 FAIRE-seq pharate_T3leg_faire_rep1 pharate_T3leg_faire_rep2 pharate appendage pharate_T3leg_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948718 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948718 SRX155028 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514067 SRR514067 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514067/SRR514067.fastq.gz GSM948718_pharate_T3leg_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM948717 1 SRS346307 FAIRE-seq wing_disc_faire_rep1 wing_disc_faire_rep2 wing_disc_faire_rep3 3rd instar larval imaginal disc wing_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948717 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948717 SRX155027 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514064 SRR514064 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514064/SRR514064.fastq.gz GSM948717_wing_disc_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM948717 1 SRS346307 FAIRE-seq wing_disc_faire_rep1 wing_disc_faire_rep2 wing_disc_faire_rep3 3rd instar larval imaginal disc wing_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948717 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948717 SRX155027 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514064 SRR514064 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514064/SRR514064.fastq.gz GSM948717_wing_disc_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.1.zip 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM948716 1 SRS346306 FAIRE-seq haltere_disc_faire_rep1 haltere_disc_faire_rep2 haltere_disc_faire_rep3 3rd instar larval imaginal disc haltere_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948716 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948716 SRX155026 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514061 SRR514061 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514061/SRR514061.fastq.gz GSM948716_haltere_disc_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM948716 1 SRS346306 FAIRE-seq haltere_disc_faire_rep1 haltere_disc_faire_rep2 haltere_disc_faire_rep3 3rd instar larval imaginal disc haltere_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948716 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948716 SRX155026 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514061 SRR514061 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514061/SRR514061.fastq.gz GSM948716_haltere_disc_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM948715 1 SRS346305 FAIRE-seq T3leg_disc_faire_rep1 T3leg_disc_faire_rep2 T3leg_disc_faire_rep3 3rd instar larval imaginal disc T3leg_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948715 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948715 SRX155025 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514058 SRR514058 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514058/SRR514058.fastq.gz GSM948715_T3leg_disc_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM948715 1 SRS346305 FAIRE-seq T3leg_disc_faire_rep1 T3leg_disc_faire_rep2 T3leg_disc_faire_rep3 3rd instar larval imaginal disc T3leg_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948715 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948715 SRX155025 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514058 SRR514058 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514058/SRR514058.fastq.gz GSM948715_T3leg_disc_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM948714 1 SRS346304 FAIRE-seq e16-18hr_faire_rep1 e16-18hr_faire_rep2 16-18 hour embryos e16-18hr_faire 16-18 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948714 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948714 SRX155024 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514056 SRR514056 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514056/SRR514056.fastq.gz GSM948714_e16-18hr_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 16-18 hours after egg laying whole embryo OregonR GSM948714 1 SRS346304 FAIRE-seq e16-18hr_faire_rep1 e16-18hr_faire_rep2 16-18 hour embryos e16-18hr_faire 16-18 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948714 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948714 SRX155024 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514056 SRR514056 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514056/SRR514056.fastq.gz GSM948714_e16-18hr_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 16-18 hours after egg laying whole embryo OregonR GSM948713 1 SRS346303 FAIRE-seq e6-8hr_faire_rep1 e6-8hr_faire_rep2 6-8 hour embryos e6-8hr_faire 6-8 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948713 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948713 SRX155023 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514054 SRR514054 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514054/SRR514054.fastq.gz GSM948713_e6-8hr_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 6-8 hours after egg laying whole embryo OregonR GSM948713 1 SRS346303 FAIRE-seq e6-8hr_faire_rep1 e6-8hr_faire_rep2 6-8 hour embryos e6-8hr_faire 6-8 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948713 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948713 SRX155023 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514054 SRR514054 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514054/SRR514054.fastq.gz GSM948713_e6-8hr_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 6-8 hours after egg laying whole embryo OregonR GSM948712 1 SRS346302 FAIRE-seq e2-4hr_faire_rep1 e2-4hr_faire_rep2 2-4 hour embryos e2-4hr_faire 2-4 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948712 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948712 SRX155022 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514052 SRR514052 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514052/SRR514052.fastq.gz GSM948712_e2-4hr_FAIRE_POOL.wig ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 2-4 hours after egg laying whole embryo OregonR GSM948712 1 SRS346302 FAIRE-seq e2-4hr_faire_rep1 e2-4hr_faire_rep2 2-4 hour embryos e2-4hr_faire 2-4 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948712 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948712 SRX155022 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514052 SRR514052 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514052/SRR514052.fastq.gz GSM948712_e2-4hr_FAIRE_peaks.bed ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-38727/E-GEOD-38727.processed.2.zip 2-4 hours after egg laying whole embryo OregonR GSM1295430 1 SRS517590 pharate appendage pharate_wing_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate wing y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295430 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295430 SRX396603 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055740 SRR1055740 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/000/SRR1055740/SRR1055740.fastq.gz stage P14 pharate adult pharate wing y;cn,bw,sp GSM1295430 1 SRS517590 pharate appendage pharate_wing_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate wing y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295430 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295430 SRX396603 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055739 SRR1055739 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/009/SRR1055739/SRR1055739.fastq.gz stage P14 pharate adult pharate wing y;cn,bw,sp GSM1295429 1 SRS517589 pharate appendage pharate_haltere_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295429 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295429 SRX396602 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055738 SRR1055738 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/008/SRR1055738/SRR1055738.fastq.gz stage P14 pharate adult pharate haltere y;cn,bw,sp GSM1295429 1 SRS517589 pharate appendage pharate_haltere_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295429 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295429 SRX396602 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055737 SRR1055737 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/007/SRR1055737/SRR1055737.fastq.gz stage P14 pharate adult pharate haltere y;cn,bw,sp GSM1295428 1 SRS517588 pharate appendage pharate_T3leg_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295428 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295428 SRX396601 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055736 SRR1055736 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/006/SRR1055736/SRR1055736.fastq.gz stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM1295428 1 SRS517588 pharate appendage pharate_T3leg_rna (rep1 and rep2) stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295428 extract 1 Illumina HiSeq 2000 cDNA transcriptomic RNA-Seq total RNA GSM1295428 SRX396601 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055735 SRR1055735 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/005/SRR1055735/SRR1055735.fastq.gz stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM1295427 1 SRS517587 3rd instar larval imaginal disc wing_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295427 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295427 SRX396600 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055734 SRR1055734 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/004/SRR1055734/SRR1055734.fastq.gz 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM1295427 1 SRS517587 3rd instar larval imaginal disc wing_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295427 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295427 SRX396600 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055733 SRR1055733 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/003/SRR1055733/SRR1055733.fastq.gz 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM1295426 1 SRS517586 3rd instar larval imaginal disc haltere_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295426 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295426 SRX396599 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055732 SRR1055732 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/002/SRR1055732/SRR1055732.fastq.gz 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM1295426 1 SRS517586 3rd instar larval imaginal disc haltere_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295426 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295426 SRX396599 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055731 SRR1055731 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/001/SRR1055731/SRR1055731.fastq.gz 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM1295425 1 SRS517585 3rd instar larval imaginal disc leg_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295425 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295425 SRX396598 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055730 SRR1055730 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/000/SRR1055730/SRR1055730.fastq.gz 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM1295425 1 SRS517585 3rd instar larval imaginal disc leg_disc_rna (rep1 and rep2) 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295425 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295425 SRX396598 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055729 SRR1055729 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/009/SRR1055729/SRR1055729.fastq.gz 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM1295424 1 SRS517584 16-18 hour embryos e16-18hr_rna (rep1 and rep2) 16-18 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295424 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295424 SRX396597 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055728 SRR1055728 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/008/SRR1055728/SRR1055728.fastq.gz 16-18 hours after egg laying whole embryo OregonR GSM1295424 1 SRS517584 16-18 hour embryos e16-18hr_rna (rep1 and rep2) 16-18 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295424 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295424 SRX396597 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055727 SRR1055727 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/007/SRR1055727/SRR1055727.fastq.gz 16-18 hours after egg laying whole embryo OregonR GSM1295423 1 SRS517583 6-8 hour embryos e6-8hr_rna (rep1 and rep2) 6-8 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295423 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295423 SRX396596 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055726 SRR1055726 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/006/SRR1055726/SRR1055726.fastq.gz 6-8 hours after egg laying whole embryo OregonR GSM1295423 1 SRS517583 6-8 hour embryos e6-8hr_rna (rep1 and rep2) 6-8 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295423 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295423 SRX396596 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055725 SRR1055725 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/005/SRR1055725/SRR1055725.fastq.gz 6-8 hours after egg laying whole embryo OregonR GSM1295422 1 SRS517582 2-4 hour embryos e2-4hr_rna (rep1 and rep2) 2-4 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295422 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295422 SRX396595 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055724 SRR1055724 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/004/SRR1055724/SRR1055724.fastq.gz 2-4 hours after egg laying whole embryo OregonR GSM1295422 1 SRS517582 2-4 hour embryos e2-4hr_rna (rep1 and rep2) 2-4 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress ArrayExpress P-GSE38727-8 ArrayExpress GSM1295422 extract 1 Illumina Genome Analyzer II cDNA transcriptomic RNA-Seq total RNA GSM1295422 SRX396595 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR1055723 SRR1055723 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR105/003/SRR1055723/SRR1055723.fastq.gz 2-4 hours after egg laying whole embryo OregonR GSM1261349 1 SRS500417 FAIRE-seq larval_cns_faire_rep1: AGATGGT larval_cns_faire_rep2: GATCTTG larval_cns_faire_rep3: TCAGGAC 3rd instar larval central nervous system larval_cns_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261349 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261349 SRX375140 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027613 SRR1027613 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/003/SRR1027613/SRR1027613.fastq.gz 3rd instar larva EFO EFO_0002682 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp GSM1261349 1 SRS500417 FAIRE-seq larval_cns_faire_rep1: AGATGGT larval_cns_faire_rep2: GATCTTG larval_cns_faire_rep3: TCAGGAC 3rd instar larval central nervous system larval_cns_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261349 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261349 SRX375140 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027612 SRR1027612 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/002/SRR1027612/SRR1027612.fastq.gz 3rd instar larva EFO EFO_0002682 central nervous system EFO http://purl.obolibrary.org/obo/UBERON_0001017 y;cn,bw,sp GSM1261348 1 SRS500416 FAIRE-seq eye-antenna_disc_faire_rep1: CACGTCG eye-antenna_disc_faire_rep2: GTTAATC eye-antenna_disc_faire_rep3: ACAGTTG 3rd instar larval imaginal disc eye-antenna_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 eye-antennal disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261348 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261348 SRX375139 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027610 SRR1027610 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/000/SRR1027610/SRR1027610.fastq.gz 3rd instar larva EFO EFO_0002682 eye-antennal disc y;cn,bw,sp GSM1261348 1 SRS500416 FAIRE-seq eye-antenna_disc_faire_rep1: CACGTCG eye-antenna_disc_faire_rep2: GTTAATC eye-antenna_disc_faire_rep3: ACAGTTG 3rd instar larval imaginal disc eye-antenna_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 eye-antennal disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM1261348 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM1261348 SRX375139 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-7 ArrayExpress SRR1027609 SRR1027609 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/009/SRR1027609/SRR1027609.fastq.gz 3rd instar larva EFO EFO_0002682 eye-antennal disc y;cn,bw,sp GSM948725 1 SRS346315 Input genomic_input_ycnbwsp adult female virgins genomic_input_ycnbwsp adult EFO EFO_0001272 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole adult y;cn,bw,sp ArrayExpress ArrayExpress P-GSE38727-6 ArrayExpress GSM948725 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948725 SRX155035 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514095 SRR514095 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514095/SRR514095.fastq.gz adult EFO EFO_0001272 whole adult y;cn,bw,sp GSM948724 1 SRS346314 Input genomic_input_OregonR adult female virgins genomic_input_OregonR adult EFO EFO_0001272 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole adult OregonR ArrayExpress ArrayExpress P-GSE38727-6 ArrayExpress GSM948724 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948724 SRX155034 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514094 SRR514094 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514094/SRR514094.fastq.gz adult EFO EFO_0001272 whole adult OregonR GSM948720 1 SRS346310 FAIRE-seq pharate_wing_faire_rep1 pharate_wing_faire_rep2 pharate appendage pharate_wing_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate wing y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948720 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948720 SRX155030 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514075 SRR514075 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514075/SRR514075.fastq.gz stage P14 pharate adult pharate wing y;cn,bw,sp GSM948719 1 SRS346309 FAIRE-seq pharate_haltere_faire_rep1 pharate_haltere_faire_rep2 pharate appendage pharate_haltere_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948719 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948719 SRX155029 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514073 SRR514073 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514073/SRR514073.fastq.gz stage P14 pharate adult pharate haltere y;cn,bw,sp GSM948719 1 SRS346309 FAIRE-seq pharate_haltere_faire_rep1 pharate_haltere_faire_rep2 pharate appendage pharate_haltere_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948719 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948719 SRX155029 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514072 SRR514072 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514072/SRR514072.fastq.gz stage P14 pharate adult pharate haltere y;cn,bw,sp GSM948719 1 SRS346309 FAIRE-seq pharate_haltere_faire_rep1 pharate_haltere_faire_rep2 pharate appendage pharate_haltere_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 pharate haltere y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948719 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948719 SRX155029 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514071 SRR514071 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514071/SRR514071.fastq.gz stage P14 pharate adult pharate haltere y;cn,bw,sp GSM948718 1 SRS346308 FAIRE-seq pharate_T3leg_faire_rep1 pharate_T3leg_faire_rep2 pharate appendage pharate_T3leg_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948718 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948718 SRX155028 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514069 SRR514069 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514069/SRR514069.fastq.gz stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM948718 1 SRS346308 FAIRE-seq pharate_T3leg_faire_rep1 pharate_T3leg_faire_rep2 pharate appendage pharate_T3leg_faire stage P14 pharate adult Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 pharate leg y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948718 extract 1 Illumina HiSeq 2000 other genomic OTHER genomic DNA GSM948718 SRX155028 Illumina HiSeq 2000 (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514068 SRR514068 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514068/SRR514068.fastq.gz stage P14 pharate adult T3 pharate leg y;cn,bw,sp GSM948717 1 SRS346307 FAIRE-seq wing_disc_faire_rep1 wing_disc_faire_rep2 wing_disc_faire_rep3 3rd instar larval imaginal disc wing_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948717 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948717 SRX155027 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514066 SRR514066 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514066/SRR514066.fastq.gz 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM948717 1 SRS346307 FAIRE-seq wing_disc_faire_rep1 wing_disc_faire_rep2 wing_disc_faire_rep3 3rd instar larval imaginal disc wing_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 wing disc EFO EFO_0001933 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948717 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948717 SRX155027 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514065 SRR514065 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514065/SRR514065.fastq.gz 3rd instar larva EFO EFO_0002682 wing disc EFO EFO_0001933 y;cn,bw,sp GSM948716 1 SRS346306 FAIRE-seq haltere_disc_faire_rep1 haltere_disc_faire_rep2 haltere_disc_faire_rep3 3rd instar larval imaginal disc haltere_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948716 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948716 SRX155026 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514063 SRR514063 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514063/SRR514063.fastq.gz 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM948716 1 SRS346306 FAIRE-seq haltere_disc_faire_rep1 haltere_disc_faire_rep2 haltere_disc_faire_rep3 3rd instar larval imaginal disc haltere_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 haltere disc EFO EFO_0000421 y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948716 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948716 SRX155026 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514062 SRR514062 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514062/SRR514062.fastq.gz 3rd instar larva EFO EFO_0002682 haltere disc EFO EFO_0000421 y;cn,bw,sp GSM948715 1 SRS346305 FAIRE-seq T3leg_disc_faire_rep1 T3leg_disc_faire_rep2 T3leg_disc_faire_rep3 3rd instar larval imaginal disc T3leg_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948715 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948715 SRX155025 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514060 SRR514060 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514060/SRR514060.fastq.gz 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM948715 1 SRS346305 FAIRE-seq T3leg_disc_faire_rep1 T3leg_disc_faire_rep2 T3leg_disc_faire_rep3 3rd instar larval imaginal disc T3leg_disc_faire 3rd instar larva EFO EFO_0002682 Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 T3 leg disc y;cn,bw,sp P-GSE38727-5 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948715 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948715 SRX155025 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514059 SRR514059 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514059/SRR514059.fastq.gz 3rd instar larva EFO EFO_0002682 T3 leg disc y;cn,bw,sp GSM948714 1 SRS346304 FAIRE-seq e16-18hr_faire_rep1 e16-18hr_faire_rep2 16-18 hour embryos e16-18hr_faire 16-18 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948714 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948714 SRX155024 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514057 SRR514057 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514057/SRR514057.fastq.gz 16-18 hours after egg laying whole embryo OregonR GSM948713 1 SRS346303 FAIRE-seq e6-8hr_faire_rep1 e6-8hr_faire_rep2 6-8 hour embryos e6-8hr_faire 6-8 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948713 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948713 SRX155023 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514055 SRR514055 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514055/SRR514055.fastq.gz 6-8 hours after egg laying whole embryo OregonR GSM948712 1 SRS346302 FAIRE-seq e2-4hr_faire_rep1 e2-4hr_faire_rep2 2-4 hour embryos e2-4hr_faire 2-4 hours after egg laying Drosophila melanogaster EFO http://purl.obolibrary.org/obo/NCBITaxon_7227 whole embryo OregonR P-GSE38727-2 ArrayExpress P-GSE38727-1 ArrayExpress P-GSE38727-3 ArrayExpress GSM948712 extract 1 Illumina Genome Analyzer II other genomic OTHER genomic DNA GSM948712 SRX155022 Illumina Genome Analyzer II (Drosophila melanogaster) sequencing assay P-GSE38727-4 ArrayExpress SRR514053 SRR514053 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR514/SRR514053/SRR514053.fastq.gz 2-4 hours after egg laying whole embryo OregonR