Source Name Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [cell line] Characteristics [knockdown] Term Source REF Term Accession Number Characteristics [organism] Term Source REF Term Accession Number Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Assay Name Array Design REF Term Source REF Technology Type Protocol REF Term Source REF Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [KNOCKDOWN] Term Source REF Term Accession Number GSM923566 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siTARDBP 3 SK-Hep1 siTARDBP Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923566 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923566 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923566 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923566_sample_table.txt norm GSM923566_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip siTARDBP GSM923565 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siTARDBP 2 SK-Hep1 siTARDBP Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923565 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923565 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923565 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923565_sample_table.txt norm GSM923565_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip siTARDBP GSM923564 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siTARDBP 1 SK-Hep1 siTARDBP Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923564 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923564 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923564 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923564_sample_table.txt norm GSM923564_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip siTARDBP GSM923563 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siLuc 3 SK-Hep1 control EFO EFO_0001461 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923563 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923563 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923563 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923563_sample_table.txt norm GSM923563_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip control EFO EFO_0001461 GSM923562 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siLuc 2 SK-Hep1 control EFO EFO_0001461 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923562 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923562 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923562 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923562_sample_table.txt norm GSM923562_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip control EFO EFO_0001461 GSM923561 1 To export to gene expression data based on unique gene, we used Sample Gene Profile option of Illumina BeadStudio software. The whole 47231 probes on the Human-Ht12 beadChip ver. were used. SK-Hep1 hepatocellular carcinoma cell line siLuc 1 SK-Hep1 control EFO EFO_0001461 Homo sapiens EFO http://purl.obolibrary.org/obo/NCBITaxon_9606 P-GSE37640-2 ArrayExpress GSM923561 extract 1 total RNA P-GSE37640-3 ArrayExpress GSM923561 LE 1 Biotin P-GSE37640-4 ArrayExpress GSM923561 A-GEOD-10558 ArrayExpress array assay P-GSE37640-1 ArrayExpress P-GSE37640-5 ArrayExpress GSM923561_sample_table.txt norm GSM923561_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-37640/E-GEOD-37640.processed.1.zip control EFO EFO_0001461