Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [cell type]	Characteristics [line]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [parental cell line]	Characteristics [source]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [CELL TYPE]	FactorValue [LINE]	FactorValue [SOURCE]
GSM884373 1	Gene expression data from hiPS-2 c.III grown at low oxygen	hiPS-2 c.III p.50 (LO); XIST-	hiPS-2 c.III p.50 XIST-	XIST-	hiPS-2 c.III	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884373 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884373 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884373	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884373_JL2011091505.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884373_sample_table.txt norm	GSM884373_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST-	hiPS-2 c.III	not specified
GSM884372 1	Gene expression data from hiPS-6C-1	hIPS 6C-1 c.III p.30 (HO); XIST-	hIPS 6C-1 c.III p.30 XIST-	XIST-	hiPS- 6C-1	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	Type I Diabetes Mellitus patient	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884372 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884372 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884372	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884372_JL2011072818.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884372_sample_table.txt norm	GSM884372_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST-	hiPS- 6C-1	Type I Diabetes Mellitus patient
GSM884371 1	Gene expression data from hiPS 12D-1	hiPS 12D-1 c.III p.30 (HO); XIST-	hiPS 12D-1 c.III p.30 XIST-	XIST-	hiPS-12D-1	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	  	Huntington's Disease patient	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884371 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884371 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884371	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884371_JL2011072817.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884371_sample_table.txt norm	GSM884371_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST-	hiPS-12D-1	Huntington's Disease patient
GSM884370 1	Gene expression data from hiPS-2	hiPS-2 p.9 (HO); XIST+	hiPS-2 p.9 XIST+	XIST+	hiPS-2	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884370 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884370 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884370	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884370_JL2010093005.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884370_sample_table.txt norm	GSM884370_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-2	not specified
GSM884369 1	Gene expression data from hiPS-11 grown at high oxygen	hiPS-11 p.16 (HO); XIST+	hiPS-11 p.16 XIST+ rep2	XIST+	hiPS-11	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884369 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884369 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884369	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884369_JL2010093004.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884369_sample_table.txt norm	GSM884369_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-11	not specified
GSM884368 1	Gene expression data from hiPS-11 grown at low oxygen	hiPS-11 p.16 (LO); XIST+	hiPS-11 p.16 XIST+ rep1	XIST+	hiPS-11	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884368 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884368 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884368	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884368_JL2010093003.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884368_sample_table.txt norm	GSM884368_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-11	not specified
GSM884367 1	Gene expression data from hiPS-12	hiPS-12 p.23 (LO); XIST+	hiPS-12 p.23 XIST+	XIST+	hiPS-12	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884367 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884367 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884367	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884367_JL2010093002.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884367_sample_table.txt norm	GSM884367_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-12	not specified
GSM884366 1	Gene expression data from hiPS-9	hiPS-9 p.7 (HO); XIST+	hiPS-9 p.7 XIST+	XIST+	hiPS-9	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884366 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884366 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884366	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884366_JL2010093001.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884366_sample_table.txt norm	GSM884366_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-9	not specified
GSM884365 1	Gene expression data from hiPS-12 c.III	hiPS-12 c.III p.30 (HO); XIST-	hiPS-12 c.III p.30 XIST-	XIST-	hiPS-12 c.III	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884365 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884365 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884365	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884365_JL2010062936.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884365_sample_table.txt norm	GSM884365_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST-	hiPS-12 c.III	not specified
GSM884364 1	Gene expression data from hiPS-3	hiPS-3 p.14 (HO); XIST+	hiPS-3 p.14 XIST+	XIST+	hiPS-3	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884364 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884364 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884364	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884364_JL2010062935.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884364_sample_table.txt norm	GSM884364_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-3	not specified
GSM884363 1	Gene expression data from hiPS-1	hiPS-1 p.31 (HO); XIST+	hiPS-1 p.31 XIST+	XIST+	hiPS-1	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884363 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884363 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884363	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884363_JL2010062934.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884363_sample_table.txt norm	GSM884363_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-1	not specified
GSM884362 1	Gene expression data from hiPS-9 c.III	hiPS-9 c.III p.19 (HO); XIST-	hiPS-9 c.III p.19 XIST-	XIST-	hiPS-9 c.III	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884362 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884362 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884362	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884362_JL2010062933.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884362_sample_table.txt norm	GSM884362_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST-	hiPS-9 c.III	not specified
GSM884361 1	Gene expression data from hiPS-10	hiPS-10 p.24 (HO); XIST+	hiPS-10 p.24 XIST+	XIST+	hiPS-10	Homo sapiens	EFO	http://purl.obolibrary.org/obo/NCBITaxon_9606	IMR-90 fibroblasts	  	P-GSE36233-2	ArrayExpress	P-GSE36233-3	ArrayExpress	P-GSE36233-4	ArrayExpress	GSM884361 extract 1	total RNA	P-GSE36233-5	ArrayExpress	GSM884361 LE 1	biotin	P-GSE36233-6	ArrayExpress	GSM884361	A-AFFY-44	ArrayExpress	array assay	P-GSE36233-7	ArrayExpress	GSM884361_JL2010062932.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.raw.1.zip	P-GSE36233-1	ArrayExpress	GSM884361_sample_table.txt norm	GSM884361_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-36233/E-GEOD-36233.processed.1.zip	XIST+	hiPS-10	not specified