Source Name Comment [Sample_characteristics] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics [Organism] Term Source REF Term Accession Number Characteristics [OrganismPart] Characteristics [DevelopmentalStage] Extract Name Material Type Labeled Extract Name Label Hybridization Name Array Design REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue[organism part] Factor Value[injury] Factor Value [time] Unit[TimeUnit] GSM74295 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Lesioned adult zebrafish retina, 5d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74295 extract 1 total RNA GSM74295 LE 1 biotin GSM74295 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-12 ArrayExpress GSM74295_sample_table.txt norm GSM74295_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina lesioned 5 day GSM74292 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Control adult zebrafish retina, 5d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74292 extract 1 total RNA GSM74292 LE 1 biotin GSM74292 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-11 ArrayExpress GSM74292_sample_table.txt norm GSM74292_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 5 day GSM74288 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Lesioned adult zebrafish retina, 7d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74288 extract 1 total RNA GSM74288 LE 1 biotin GSM74288 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-10 ArrayExpress GSM74288_sample_table.txt norm GSM74288_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina lesioned 7 day GSM74286 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Control adult zebrafish retina, 7d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74286 extract 1 total RNA GSM74286 LE 1 biotin GSM74286 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-9 ArrayExpress GSM74286_sample_table.txt norm GSM74286_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 7 day GSM74284 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Lesioned adult zebrafish retina, 3d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74284 extract 1 total RNA GSM74284 LE 1 biotin GSM74284 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-8 ArrayExpress GSM74284_sample_table.txt norm GSM74284_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina lesioned 3 day GSM74282 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Control adult zebrafish retina, 3d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74282 extract 1 total RNA GSM74282 LE 1 biotin GSM74282 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-7 ArrayExpress GSM74282_sample_table.txt norm GSM74282_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 3 day GSM74267 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Lesioned adult zebrafish retina, 14d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74267 extract 1 total RNA GSM74267 LE 1 biotin GSM74267 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-6 ArrayExpress GSM74267_sample_table.txt norm GSM74267_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina lesioned 14 day GSM74265 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Control adult zebrafish retina, 14d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74265 extract 1 total RNA GSM74265 LE 1 biotin GSM74265 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-5 ArrayExpress GSM74265_sample_table.txt norm GSM74265_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 14 day GSM74264 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Lesioned adult zebrafish retina, 2d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74264 extract 1 total RNA GSM74264 LE 1 biotin GSM74264 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-4 ArrayExpress GSM74264_sample_table.txt norm GSM74264_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina lesioned 2 day GSM74262 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "Control adult zebrafish retina, 2d post-lesion" Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74262 extract 1 total RNA GSM74262 LE 1 biotin GSM74262 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-3 ArrayExpress GSM74262_sample_table.txt norm GSM74262_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 2 day GSM74261 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." retina "true" control adult zebrafish retina Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 retina adult GSM74261 extract 1 total RNA GSM74261 LE 1 biotin GSM74261 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-2 ArrayExpress GSM74261_sample_table.txt norm GSM74261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip retina control 0 day GSM74260 1 wildtype adult "Cameron, Gentile, Middleton, Yurco (2005). Gene expression profiles of intact and regenerating zebrafish retina. Molecular Vision 11 (in press)." Brain Control Adult Zebrafish Brain Danio rerio EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7955 brain adult GSM74260 extract 1 total RNA GSM74260 LE 1 biotin GSM74260 A-AFFY-38 ArrayExpress P-GSE3303-13 ArrayExpress P-GSE3303-1 ArrayExpress GSM74260_sample_table.txt norm GSM74260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-3303/E-GEOD-3303.processed.1.zip brain control 0 day