Source Name	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [genotype]	Characteristics [organism]	Term Source REF	Term Accession Number	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [strain or line]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Array Design REF	Term Source REF	Technology Type	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	FactorValue [GENOTYPE]
GSM745921 1	Liver	Liver_WT_rep4	WT	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745921 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745921 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745921	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745921_sample_table.txt norm	GSM745921_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	WT
GSM745920 1	Liver	Liver_WT_rep3	WT	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745920 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745920 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745920	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745920_sample_table.txt norm	GSM745920_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	WT
GSM745919 1	Liver	Liver_WT_rep2	WT	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745919 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745919 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745919	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745919_sample_table.txt norm	GSM745919_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	WT
GSM745918 1	Liver	Liver_WT_rep1	WT	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745918 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745918 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745918	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745918_sample_table.txt norm	GSM745918_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	WT
GSM745917 1	Liver	Liver_mPER2_KO_rep4	mper2brdm1 mutant (PMID: 10408444)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745917 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745917 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745917	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745917_sample_table.txt norm	GSM745917_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	mper2brdm1 mutant (PMID: 10408444)
GSM745916 1	Liver	Liver_mPER2_KO_rep3	mper2brdm1 mutant (PMID: 10408444)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745916 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745916 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745916	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745916_sample_table.txt norm	GSM745916_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	mper2brdm1 mutant (PMID: 10408444)
GSM745915 1	Liver	Liver_mPER2_KO_rep2	mper2brdm1 mutant (PMID: 10408444)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745915 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745915 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745915	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745915_sample_table.txt norm	GSM745915_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	mper2brdm1 mutant (PMID: 10408444)
GSM745914 1	Liver	Liver_mPER2_KO_rep1	mper2brdm1 mutant (PMID: 10408444)	Mus musculus	EFO	http://purl.obolibrary.org/obo/NCBITaxon_10090	liver	EFO	http://purl.obolibrary.org/obo/UBERON_0002107	mixed background 129sv and C57Bl/6	P-GSE30139-2	ArrayExpress	GSM745914 extract 1	total RNA	P-GSE30139-3	ArrayExpress	GSM745914 LE 1	Cyanine 3-CTP	P-GSE30139-4	ArrayExpress	GSM745914	A-MEXP-724	ArrayExpress	array assay	P-GSE30139-1	ArrayExpress	P-GSE30139-5	ArrayExpress	GSM745914_sample_table.txt norm	GSM745914_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-30139/E-GEOD-30139.processed.1.zip	mper2brdm1 mutant (PMID: 10408444)