Source Name Comment [Sample_description] Comment [Sample_description] Comment [Sample_source_name] Characteristics[Organism] Characteristics[stress] Characteristics[tissue] Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Extract Name Material Type Protocol REF Term Source REF Labeled Extract Name Label Protocol REF Term Source REF Hybridization Name Array Design REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Protocol REF Term Source REF Array Data File Comment [ArrayExpress FTP file] Protocol REF Term Source REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] FactorValue [STRESS] FactorValue [TISSUE] GSM721270 1 080709 313dR 310dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721270 extract 1 total RNA P-GSE29132-5 GSM721270 LE 1 Alexa 647 P-GSE29132-6 GSM721270 A-GEOD-6438 P-GSE29132-7 P-GSE29132-27 P-GSE29132-9 P-GSE29132-10 GSM721270_080709_313dR_310dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721270_sample_table.txt norm GSM721270_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721269 1 080709 310dR 101dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721269 extract 1 total RNA P-GSE29132-5 GSM721269 LE 1 Alexa 647 P-GSE29132-6 GSM721269 A-GEOD-6438 P-GSE29132-7 P-GSE29132-26 P-GSE29132-9 P-GSE29132-10 GSM721269_080709_310dR_101dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721269_sample_table.txt norm GSM721269_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants GSM721268 1 080709 302dR 313dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721268 extract 1 total RNA P-GSE29132-5 GSM721268 LE 1 Alexa 647 P-GSE29132-6 GSM721268 A-GEOD-6438 P-GSE29132-7 P-GSE29132-25 P-GSE29132-9 P-GSE29132-10 GSM721268_080709_302dR_313dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721268_sample_table.txt norm GSM721268_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721267 1 080609 312dR 304dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721267 extract 1 total RNA P-GSE29132-5 GSM721267 LE 1 Alexa 647 P-GSE29132-6 GSM721267 A-GEOD-6438 P-GSE29132-7 P-GSE29132-24 P-GSE29132-9 P-GSE29132-10 GSM721267_080609_312dR_304dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721267_sample_table.txt norm GSM721267_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721266 1 080609 308dR 302dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721266 extract 1 total RNA P-GSE29132-5 GSM721266 LE 1 Alexa 647 P-GSE29132-6 GSM721266 A-GEOD-6438 P-GSE29132-7 P-GSE29132-23 P-GSE29132-9 P-GSE29132-10 GSM721266_080609_308dR_302dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721266_sample_table.txt norm GSM721266_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721265 1 080609 304dR 308dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721265 extract 1 total RNA P-GSE29132-5 GSM721265 LE 1 Alexa 647 P-GSE29132-6 GSM721265 A-GEOD-6438 P-GSE29132-7 P-GSE29132-22 P-GSE29132-9 P-GSE29132-10 GSM721265_080609_304dR_308dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721265_sample_table.txt norm GSM721265_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721264 1 080509 208dB 203dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721264 extract 1 total RNA P-GSE29132-5 GSM721264 LE 1 Alexa 647 P-GSE29132-6 GSM721264 A-GEOD-6438 P-GSE29132-7 P-GSE29132-21 P-GSE29132-9 P-GSE29132-10 GSM721264_080509_208dB_203dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721264_sample_table.txt norm GSM721264_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721263 1 080509 207dR 213dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721263 extract 1 total RNA P-GSE29132-5 GSM721263 LE 1 Alexa 647 P-GSE29132-6 GSM721263 A-GEOD-6438 P-GSE29132-7 P-GSE29132-20 P-GSE29132-9 P-GSE29132-10 GSM721263_080509_207dR_213dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721263_sample_table.txt norm GSM721263_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721262 1 080409 209dR 212d B.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721262 extract 1 total RNA P-GSE29132-5 GSM721262 LE 1 Alexa 647 P-GSE29132-6 GSM721262 A-GEOD-6438 P-GSE29132-7 P-GSE29132-19 P-GSE29132-9 P-GSE29132-10 GSM721262_080409_209dR_212d_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721262_sample_table.txt norm GSM721262_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721261 1 080409 109dR 108d B.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721261 extract 1 total RNA P-GSE29132-5 GSM721261 LE 1 Alexa 647 P-GSE29132-6 GSM721261 A-GEOD-6438 P-GSE29132-7 P-GSE29132-18 P-GSE29132-9 P-GSE29132-10 GSM721261_080409_109dR_108d_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721261_sample_table.txt norm GSM721261_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721260 1 073009 212dR 207dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721260 extract 1 total RNA P-GSE29132-5 GSM721260 LE 1 Alexa 647 P-GSE29132-6 GSM721260 A-GEOD-6438 P-GSE29132-7 P-GSE29132-17 P-GSE29132-9 P-GSE29132-10 GSM721260_073009_212dR_207dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721260_sample_table.txt norm GSM721260_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721259 1 073009 203dB 213dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721259 extract 1 total RNA P-GSE29132-5 GSM721259 LE 1 Alexa 647 P-GSE29132-6 GSM721259 A-GEOD-6438 P-GSE29132-7 P-GSE29132-16 P-GSE29132-9 P-GSE29132-10 GSM721259_073009_203dB_213dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721259_sample_table.txt norm GSM721259_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721258 1 072309 208dR 312dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721258 extract 1 total RNA P-GSE29132-5 GSM721258 LE 1 Alexa 647 P-GSE29132-6 GSM721258 A-GEOD-6438 P-GSE29132-7 P-GSE29132-15 P-GSE29132-9 P-GSE29132-10 GSM721258_072309_208dR_312dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721258_sample_table.txt norm GSM721258_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants GSM721257 1 071009 109dB 111dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721257 extract 1 total RNA P-GSE29132-5 GSM721257 LE 1 Alexa 647 P-GSE29132-6 GSM721257 A-GEOD-6438 P-GSE29132-7 P-GSE29132-14 P-GSE29132-9 P-GSE29132-10 GSM721257_071009_109dB_111dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721257_sample_table.txt norm GSM721257_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721256 1 071009 107dR 209dB.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721256 extract 1 total RNA P-GSE29132-5 GSM721256 LE 1 Alexa 647 P-GSE29132-6 GSM721256 A-GEOD-6438 P-GSE29132-7 P-GSE29132-13 P-GSE29132-9 P-GSE29132-10 GSM721256_071009_107dR_209dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721256_sample_table.txt norm GSM721256_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants GSM721255 1 070909 107dB 105dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721255 extract 1 total RNA P-GSE29132-5 GSM721255 LE 1 Alexa 647 P-GSE29132-6 GSM721255 A-GEOD-6438 P-GSE29132-7 P-GSE29132-12 P-GSE29132-9 P-GSE29132-10 GSM721255_070909_107dB_105dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721255_sample_table.txt norm GSM721255_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721254 1 070909 105d B 108dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721254 extract 1 total RNA P-GSE29132-5 GSM721254 LE 1 Alexa 647 P-GSE29132-6 GSM721254 A-GEOD-6438 P-GSE29132-7 P-GSE29132-11 P-GSE29132-9 P-GSE29132-10 GSM721254_070909_105d_B_108dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721254_sample_table.txt norm GSM721254_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721253 1 070809 111dB 101dR.txt Alexa 647: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721253 extract 1 total RNA P-GSE29132-5 GSM721253 LE 1 Alexa 647 P-GSE29132-6 GSM721253 A-GEOD-6438 P-GSE29132-7 P-GSE29132-8 P-GSE29132-9 P-GSE29132-10 GSM721253_070809_111dB_101dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721253_sample_table.txt norm GSM721253_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721252 1 080709 313dR 310dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721252 extract 1 total RNA P-GSE29132-5 GSM721252 LE 1 Alexa 555 P-GSE29132-6 GSM721252 A-GEOD-6438 P-GSE29132-7 P-GSE29132-27 P-GSE29132-9 P-GSE29132-10 GSM721252_080709_313dR_310dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721252_sample_table.txt norm GSM721252_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721251 1 080709 310dR 101dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721251 extract 1 total RNA P-GSE29132-5 GSM721251 LE 1 Alexa 555 P-GSE29132-6 GSM721251 A-GEOD-6438 P-GSE29132-7 P-GSE29132-26 P-GSE29132-9 P-GSE29132-10 GSM721251_080709_310dR_101dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721251_sample_table.txt norm GSM721251_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721250 1 080709 302dR 313dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721250 extract 1 total RNA P-GSE29132-5 GSM721250 LE 1 Alexa 555 P-GSE29132-6 GSM721250 A-GEOD-6438 P-GSE29132-7 P-GSE29132-25 P-GSE29132-9 P-GSE29132-10 GSM721250_080709_302dR_313dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721250_sample_table.txt norm GSM721250_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721249 1 080609 312dR 304dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721249 extract 1 total RNA P-GSE29132-5 GSM721249 LE 1 Alexa 555 P-GSE29132-6 GSM721249 A-GEOD-6438 P-GSE29132-7 P-GSE29132-24 P-GSE29132-9 P-GSE29132-10 GSM721249_080609_312dR_304dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721249_sample_table.txt norm GSM721249_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants GSM721248 1 080609 308dR 302dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721248 extract 1 total RNA P-GSE29132-5 GSM721248 LE 1 Alexa 555 P-GSE29132-6 GSM721248 A-GEOD-6438 P-GSE29132-7 P-GSE29132-23 P-GSE29132-9 P-GSE29132-10 GSM721248_080609_308dR_302dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721248_sample_table.txt norm GSM721248_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721247 1 080609 304dR 308dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721247 extract 1 total RNA P-GSE29132-5 GSM721247 LE 1 Alexa 555 P-GSE29132-6 GSM721247 A-GEOD-6438 P-GSE29132-7 P-GSE29132-22 P-GSE29132-9 P-GSE29132-10 GSM721247_080609_304dR_308dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721247_sample_table.txt norm GSM721247_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721246 1 080509 208dB 203dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721246 extract 1 total RNA P-GSE29132-5 GSM721246 LE 1 Alexa 555 P-GSE29132-6 GSM721246 A-GEOD-6438 P-GSE29132-7 P-GSE29132-21 P-GSE29132-9 P-GSE29132-10 GSM721246_080509_208dB_203dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721246_sample_table.txt norm GSM721246_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721245 1 080509 207dR 213dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721245 extract 1 total RNA P-GSE29132-5 GSM721245 LE 1 Alexa 555 P-GSE29132-6 GSM721245 A-GEOD-6438 P-GSE29132-7 P-GSE29132-20 P-GSE29132-9 P-GSE29132-10 GSM721245_080509_207dR_213dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721245_sample_table.txt norm GSM721245_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721244 1 080409 209dR 212d B.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721244 extract 1 total RNA P-GSE29132-5 GSM721244 LE 1 Alexa 555 P-GSE29132-6 GSM721244 A-GEOD-6438 P-GSE29132-7 P-GSE29132-19 P-GSE29132-9 P-GSE29132-10 GSM721244_080409_209dR_212d_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721244_sample_table.txt norm GSM721244_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants GSM721243 1 080409 109dR 108d B.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots and removed at V4. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V4 were harvested and pooled. Zea mays grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721243 extract 1 total RNA P-GSE29132-5 GSM721243 LE 1 Alexa 555 P-GSE29132-6 GSM721243 A-GEOD-6438 P-GSE29132-7 P-GSE29132-18 P-GSE29132-9 P-GSE29132-10 GSM721243_080409_109dR_108d_B.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.1.zip P-GSE29132-1 GSM721243_sample_table.txt norm GSM721243_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721242 1 073009 212dR 207dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721242 extract 1 total RNA P-GSE29132-5 GSM721242 LE 1 Alexa 555 P-GSE29132-6 GSM721242 A-GEOD-6438 P-GSE29132-7 P-GSE29132-17 P-GSE29132-9 P-GSE29132-10 GSM721242_073009_212dR_207dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721242_sample_table.txt norm GSM721242_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721241 1 073009 203dB 213dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721241 extract 1 total RNA P-GSE29132-5 GSM721241 LE 1 Alexa 555 P-GSE29132-6 GSM721241 A-GEOD-6438 P-GSE29132-7 P-GSE29132-16 P-GSE29132-9 P-GSE29132-10 GSM721241_073009_203dB_213dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721241_sample_table.txt norm GSM721241_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721240 1 072309 208dR 312dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721240 extract 1 total RNA P-GSE29132-5 GSM721240 LE 1 Alexa 555 P-GSE29132-6 GSM721240 A-GEOD-6438 P-GSE29132-7 P-GSE29132-15 P-GSE29132-9 P-GSE29132-10 GSM721240_072309_208dR_312dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721240_sample_table.txt norm GSM721240_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721239 1 071009 109dB 111dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. Shade tents were 3- by 3-m frames covered with commercially available 40% shade cloth that had extending poles to keep the cloth about 25-30 cm above the corn plants. Shade tents, placed during corn emergence (VE, covered four corn rows in the center of designated plots. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of shade to V8 were harvested and pooled. Zea mays grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721239 extract 1 total RNA P-GSE29132-5 GSM721239 LE 1 Alexa 555 P-GSE29132-6 GSM721239 A-GEOD-6438 P-GSE29132-7 P-GSE29132-14 P-GSE29132-9 P-GSE29132-10 GSM721239_071009_109dB_111dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721239_sample_table.txt norm GSM721239_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of shade to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721238 1 071009 107dR 209dB.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V8 were harvested and pooled. Zea mays grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721238 extract 1 total RNA P-GSE29132-5 GSM721238 LE 1 Alexa 555 P-GSE29132-6 GSM721238 A-GEOD-6438 P-GSE29132-7 P-GSE29132-13 P-GSE29132-9 P-GSE29132-10 GSM721238_071009_107dR_209dB.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721238_sample_table.txt norm GSM721238_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721237 1 070909 107dB 105dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Canola was planted at 7 kg ha-1, drilled 10-cm from the corn row at corn planting. Herbicides were applied at V4 to control unwanted species (canola and all plots were thereafter maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown in the presence of canola to V4 were harvested and pooled. Zea mays grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721237 extract 1 total RNA P-GSE29132-5 GSM721237 LE 1 Alexa 555 P-GSE29132-6 GSM721237 A-GEOD-6438 P-GSE29132-7 P-GSE29132-12 P-GSE29132-9 P-GSE29132-10 GSM721237_070909_107dB_105dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721237_sample_table.txt norm GSM721237_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown in the presence of canola to V4 top 8 cm of the topmost fully expanded leaf of four plants GSM721236 1 070909 105d B 108dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. No additional nitrogen was added. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four plants grown without added nitrogen to V8 were harvested and pooled. Zea mays grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721236 extract 1 total RNA P-GSE29132-5 GSM721236 LE 1 Alexa 555 P-GSE29132-6 GSM721236 A-GEOD-6438 P-GSE29132-7 P-GSE29132-11 P-GSE29132-9 P-GSE29132-10 GSM721236_070909_105d_B_108dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721236_sample_table.txt norm GSM721236_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip grown without added nitrogen to V8 top 8 cm of the topmost fully expanded leaf of four plants GSM721235 1 070809 111dB 101dR.txt Alexa 555: Field experiments were conducted in 2008 at South Dakota State Research Farm about 15 miles east of Brookings, SD. The soil parent materials were loess over glacial outwash, and the soil series was Brandt silty clay loam (fine-silty, mixed, superactive, frigid Calcic Hapludolls (Clay et al. 2009. The water content at planting ranged from 22-24%, and soil pH ranged from 6.0-6.5. Soil N at the beginning of the season was 44.5 kg N ha-1, from residual nitrate and legume credit. Nitrogen application of 236 kg N ha-1 was applied at the beginning of the season. Herbicides were applied at V2 to control unwanted species and all plots were maintained weed-free by hoeing or hand-pulling if plants survived or if new plants emerged after initial treatment. The experimental design was a randomized complete block design with three replications. A commercially available 97-d corn hybrid that had glyphosate-resistance and corn rootworm/corn borer stacked traits was planted on May 10, 2008. The seeding rate was about 79,000 seeds ha-1. Row spacing was 76 cm. Plants were grown to the V8 stage of growth and harvested on July 2, 2008. Weather conditions at harvest were partly cloudy with temperatures in the low to mid 80sF, with an 18 mph wind. top 8 cm of the topmost fully expanded leaf of four control plants were harvested and pooled. Zea mays control top 8 cm of the topmost fully expanded leaf of four control plants P-GSE29132-2 P-GSE29132-3 P-GSE29132-4 GSM721235 extract 1 total RNA P-GSE29132-5 GSM721235 LE 1 Alexa 555 P-GSE29132-6 GSM721235 A-GEOD-6438 P-GSE29132-7 P-GSE29132-8 P-GSE29132-9 P-GSE29132-10 GSM721235_070809_111dB_101dR.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.raw.2.zip P-GSE29132-1 GSM721235_sample_table.txt norm GSM721235_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-29132/E-GEOD-29132.processed.1.zip control top 8 cm of the topmost fully expanded leaf of four control plants