Investigation Title	Transcriptional analysis of prefrontal area 9 in Parkinson's disease					
Comment[Submitted Name]	Transcriptional analysis of prefrontal area 9 in Parkinson's disease					
Experimental Design	transcription profiling by array					
Experimental Design Term Source REF	EFO					
Comment[AEMIAMESCORE]	4					
Comment[SecondaryAccession]	GSE20168					
Comment[ArrayExpressReleaseDate]	2010-02-22					
Comment[Publication DOI]	10.1002/ajmg.b.30195					
Comment[ArrayExpressAccession]	E-GEOD-20168					
Comment[MAGETAB TimeStamp_Version]	2010-08-04 04:11:15 Last Changed Rev: 13058					
Comment[AEExperimentType]	transcription profiling by array					
Experimental Factor Name	disease					
Experimental Factor Type	disease					
Experimental Factor Term Source REF						
Person Last Name	Zhang	James	Middleton	Davis		
Person First Name	Yanli	Michael	Frank	Richard		
Person Mid Initials			A	L		
Person Email			middletf@upstate.edu			
Person Phone			315-464-7721			
Person Fax						
Person Address			Neuroscience and Physiology, SUNY Upstate Medical Univ, 750 East Adams St, Syracuse, NY, USA			
Person Affiliation			SUNY Upstate Medical Univ			
Person Roles			submitter			
Person Roles Term Source REF			The MGED Ontology			
Quality Control Type						
Quality Control Term Source REF						
Replicate Type						
Replicate Term Source REF						
Normalization Type						
Normalization Term Source REF						
Date of Experiment						
Public Release Date	2010-02-22					
PubMed ID	15965975					
Publication DOI	10.1002/ajmg.b.30195					
Publication Author List	Zhang Y, James M, Middleton FA, Davis RL					
Publication Title	Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms.					
Publication Status	journal_article					
Publication Status Term Source REF	The MGED Ontology					
Experiment Description	Post mortem tissue was dissected from two groups of age and gender matched groups of Parkinson and Control subjects Published work contains more information on Parkinson and Control groups					
Protocol Name	P-GSE20168-2	P-GSE20168-3	P-GSE20168-4	P-GSE20168-5	P-GSE20168-6	P-GSE20168-1
Protocol Type	nucleic_acid_extraction	labeling	hybridization	image_aquisition	feature_extraction	bioassay_data_transformation
Protocol Description	RNeasy (Qiagen)	Standard Two-Cycle cRNA IVT method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)	Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)	Standard method (Affymetrix Expression Analysis Technical Manual 701021 rev 5)	MAS5	ID_REF = <br>VALUE = Signal<br>ABS_CALL = Present/Absent<br>DETECTION P-VALUE = Detection P value
Protocol Parameters						
Protocol Hardware						
Protocol Software						
Protocol Contact						
Protocol Term Source REF					The MGED Ontology	The MGED Ontology
SDRF File	E-GEOD-20168.sdrf.txt					
Term Source Name	The MGED Ontology	ArrayExpress	EFO	The MGED Ontology		
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://www.ebi.ac.uk/arrayexpress	http://www.ebi.ac.uk/efo/	http://mged.sourceforge.net/ontologies/MGEDontology.php		
Term Source Version