Source Name	Comment [Sample_description]	Comment [Sample_source_name]	Comment [Sample_title]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [developmental stage]	Characteristics [strain or line]	Characteristics [organism part]	Term Source REF	Term Accession Number	Characteristics [disease state]	Characteristics [karyotype]	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Assay Name	Technology Type	Array Design REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value [developmental stage]	Factor Value [disease state]
GSM27483 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P30 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P30	Pool Ts1Cje_P30_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P30	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27483 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27483 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27483	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27483.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27483_sample_table.txt norm	GSM27483_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P30	model of Down Syndrome
GSM27482 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P30 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P30	Pool Ts1Cje_P30_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P30	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27482 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27482 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27482	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27482.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27482_sample_table.txt norm	GSM27482_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P30	model of Down Syndrome
GSM27481 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P15 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P15	Pool Ts1Cje_P15_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P15	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27481 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27481 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27481	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27481.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27481_sample_table.txt norm	GSM27481_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P15	model of Down Syndrome
GSM27480 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P15 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P15	Pool Ts1Cje_P15_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P15	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27480 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27480 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27480	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27480.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27480_sample_table.txt norm	GSM27480_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P15	model of Down Syndrome
GSM27479 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P0 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P0	Pool Ts1Cje_P0_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P0	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27479 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27479 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27479	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27479.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27479_sample_table.txt norm	GSM27479_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P0	model of Down Syndrome
GSM27478 1	Pool of total RNA from 3 Ts1Cje cerebella (segmental trisomy of chromosome 16) at P0 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Ts1Cje_P0	Pool Ts1Cje_P0_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P0	Ts1Cje	cerebellum	EFO	EFO_0000327	model of Down Syndrome	segmental trisomy of chromosome 16	P-GSE1611-3	ArrayExpress	GSM27478 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27478 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27478	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27478.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27478_sample_table.txt norm	GSM27478_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P0	model of Down Syndrome
GSM27477 1	Pool of total RNA from 2 euploid cerebella at P30 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P30	Pool Eu_P30_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P30	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27477 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27477 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27477	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27477.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27477_sample_table.txt norm	GSM27477_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P30	normal
GSM27476 1	Pool of total RNA from 2 euploid cerebella at P30 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P30	Pool Eu_P30_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P30	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27476 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27476 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27476	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27476.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27476_sample_table.txt norm	GSM27476_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P30	normal
GSM27475 1	Pool of total RNA from 3 euploid cerebella at P15 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P15	Pool Eu_P15_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P15	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27475 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27475 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27475	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27475.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27475_sample_table.txt norm	GSM27475_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P15	normal
GSM27474 1	Pool of total RNA from 3 euploid cerebella at P15 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P15	Pool Eu_P15_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P15	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27474 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27474 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27474	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27474.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27474_sample_table.txt norm	GSM27474_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P15	normal
GSM27473 1	Pool of total RNA from 3 euploid cerebella at P0 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P0	Pool Eu_P0_hyb2	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P0	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27473 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27473 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27473	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27473.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-2	ArrayExpress	GSM27473_sample_table.txt norm	GSM27473_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P0	normal
GSM27472 1	Pool of total RNA from 3 euploid cerebella at P0 postnatal stage Keywords = Down syndrome Keywords = Chromosome 21 Keywords = Transcriptome Keywords = Microarray Keywords = Brain Keywords = Cerebellum Keywords = Development	Pool Eu_P0	Pool Eu_P0_hyb1	Mus musculus	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10090	P0	C57BL/6	cerebellum	EFO	EFO_0000327	normal	euploid	P-GSE1611-3	ArrayExpress	GSM27472 extract 1	total RNA	P-GSE1611-4	ArrayExpress	GSM27472 LE 1	biotin	P-GSE1611-5	ArrayExpress	GSM27472	array assay	A-AFFY-6	P-GSE1611-6	ArrayExpress	P-GSE1611-7	ArrayExpress	GSM27472.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.raw.1.zip	P-GSE1611-1	ArrayExpress	GSM27472_sample_table.txt norm	GSM27472_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-1611/E-GEOD-1611.processed.1.zip	P0	normal