Source Name	Characteristics [organism]	Characteristics[developmental stage]	Characteristics[time]	Unit[time unit]	Characteristics[cell type]	Characteristics[passage]	Description	Protocol REF	Sample Name	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Hybridization Name	Array Design REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress Data Matrix FTP file]	Factor Value[compound]
GSE13975GSM348308	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-4	GSE13975GSM348308 sample	P-G13975-3	GSE13975GSM348308 extract	total_RNA	P-G13975-2	GSE13975GSM348308 LE biotin	biotin	synthetic_RNA	MGIO-labelled fMSC 3	A-AFFY-44	P-AFFY-6	GSM348308.CEL	GSM348308.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	microgel iron oxide
GSE13975GSM348305	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM348305 sample	P-G13975-3	GSE13975GSM348305 extract	total_RNA	P-G13975-2	GSE13975GSM348305 LE biotin	biotin	synthetic_RNA	Mock-labelled fMSC Control 3	A-AFFY-44	P-AFFY-6	GSM348305.CEL	GSM348305.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	none
GSE13975GSM348319	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM348319 sample	P-G13975-3	GSE13975GSM348319 extract	total_RNA	P-G13975-2	GSE13975GSM348319 LE biotin	biotin	synthetic_RNA	Ferucarbutran-labelled fMSC 1	A-AFFY-44	P-AFFY-6	GSM348319.CEL	GSM348319.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	ferucarbutran
GSE13975GSM348307	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-4	GSE13975GSM348307 sample	P-G13975-3	GSE13975GSM348307 extract	total_RNA	P-G13975-2	GSE13975GSM348307 LE biotin	biotin	synthetic_RNA	MGIO-labelled fMSC 2	A-AFFY-44	P-AFFY-6	GSM348307.CEL	GSM348307.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	microgel iron oxide
GSE13975GSM348304	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM348304 sample	P-G13975-3	GSE13975GSM348304 extract	total_RNA	P-G13975-2	GSE13975GSM348304 LE biotin	biotin	synthetic_RNA	Mock-labelled fMSC Control 2	A-AFFY-44	P-AFFY-6	GSM348304.CEL	GSM348304.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	none
GSE13975GSM348321	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM348321 sample	P-G13975-3	GSE13975GSM348321 extract	total_RNA	P-G13975-2	GSE13975GSM348321 LE biotin	biotin	synthetic_RNA	Ferucarbutran-labelled fMSC 3	A-AFFY-44	P-AFFY-6	GSM348321.CEL	GSM348321.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	ferucarbutran
GSE13975GSM348320	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM348320 sample	P-G13975-3	GSE13975GSM348320 extract	total_RNA	P-G13975-2	GSE13975GSM348320 LE biotin	biotin	synthetic_RNA	Ferucarbutran-labelled fMSC 2	A-AFFY-44	P-AFFY-6	GSM348320.CEL	GSM348320.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	ferucarbutran
GSE13975GSM348306	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-4	GSE13975GSM348306 sample	P-G13975-3	GSE13975GSM348306 extract	total_RNA	P-G13975-2	GSE13975GSM348306 LE biotin	biotin	synthetic_RNA	MGIO-labelled fMSC 1	A-AFFY-44	P-AFFY-6	GSM348306.CEL	GSM348306.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	microgel iron oxide
GSE13975GSM346543	Homo sapiens	fetus	11	week	mesenchymal stem cell	6	fetal mesenchymal stem cells (fMSC) total RNA:  1. CHP and CEL files from GCOS were imported into Genespring GX 7.3.1 along with other replicates. The sample groups were mock-labelled, M600-labelled, ferucarbotran-labelled. Each sample group consist of triplicate microarray data 2. Control strength was determined from the maximum of base/proportional of the 3 sample groups. 3. Only probes with raw signals above control strength in at least 1 out of the 3 sample groups were considered. The other probes were disregarded. 4. Probes that were flagged absent in triplicates from all sample groups were disregarded. 5. T-test was performed to identify M600-labelled probes or ferucarbotran-labelled probes that had significant difference in expression with respect to mock-labelled. Adherent cell isolated from week 11 fetus; Passage 6; Incubated with cell label (M600, ferucarbotran or mock) and washed	P-G13975-1	GSE13975GSM346543 sample	P-G13975-3	GSE13975GSM346543 extract	total_RNA	P-G13975-2	GSE13975GSM346543 LE biotin	biotin	synthetic_RNA	Mock-labelled fMSC Control 1	A-AFFY-44	P-AFFY-6	GSM346543.CEL	GSM346543.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.raw.1.zip	Affymetrix:Protocol:ExpressionStat	E-GEOD-13975-processed-data-1724383125.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-13975/E-GEOD-13975.processed.1.zip	none