Source Name	Characteristics [Organism]	Description	Protocol REF	Protocol REF	Sample Name	Protocol REF	Extract Name	Material Type	Protocol REF	Labeled Extract Name	Label	Material Type	Protocol REF	Hybridization Name	Array Design REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
GSE12688GSM318570	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318570 sample	P-G12688-4	GSE12688GSM318570 extract	total_RNA	P-G12688-3	GSE12688GSM318570 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repA tech rep3 (Mock12A.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repA tech rep3 (Mock12A.3)	GSM318570.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318573	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318573 sample	P-G12688-4	GSE12688GSM318573 extract	total_RNA	P-G12688-3	GSE12688GSM318573 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repB tech rep3 (Mock12B.2.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repB tech rep3 (Mock12B.2.3)	GSM318573.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318561	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318561 sample	P-G12688-4	GSE12688GSM318561 extract	total_RNA	P-G12688-3	GSE12688GSM318561 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repA tech rep3 (Inoc12A.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repA tech rep3 (Inoc12A.3)	GSM318561.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318575	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318575 sample	P-G12688-4	GSE12688GSM318575 extract	total_RNA	P-G12688-3	GSE12688GSM318575 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repC tech rep2 (Mock12C.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repC tech rep2 (Mock12C.2)	GSM318575.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318567	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318567 sample	P-G12688-4	GSE12688GSM318567 extract	total_RNA	P-G12688-3	GSE12688GSM318567 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repC tech rep3 (Inoc12C.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repC tech rep3 (Inoc12C.3)	GSM318567.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318572	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318572 sample	P-G12688-4	GSE12688GSM318572 extract	total_RNA	P-G12688-3	GSE12688GSM318572 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repB tech rep2 (Mock12B.2.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repB tech rep2 (Mock12B.2.2)	GSM318572.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318576	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318576 sample	P-G12688-4	GSE12688GSM318576 extract	total_RNA	P-G12688-3	GSE12688GSM318576 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repC tech rep3 (Mock12C.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repC tech rep3 (Mock12C.3)	GSM318576.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318565	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318565 sample	P-G12688-4	GSE12688GSM318565 extract	total_RNA	P-G12688-3	GSE12688GSM318565 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repC tech rep1 (Inoc12C.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repC tech rep1 (Inoc12C.1)	GSM318565.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318574	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318574 sample	P-G12688-4	GSE12688GSM318574 extract	total_RNA	P-G12688-3	GSE12688GSM318574 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repC tech rep1 (Mock12C.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repC tech rep1 (Mock12C.1)	GSM318574.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318571	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318571 sample	P-G12688-4	GSE12688GSM318571 extract	total_RNA	P-G12688-3	GSE12688GSM318571 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repB tech rep1 (Mock12B.2.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repB tech rep1 (Mock12B.2.1)	GSM318571.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318559	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318559 sample	P-G12688-4	GSE12688GSM318559 extract	total_RNA	P-G12688-3	GSE12688GSM318559 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repA tech rep1 (Inoc12A.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repA tech rep1 (Inoc12A.1)	GSM318559.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318560	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318560 sample	P-G12688-4	GSE12688GSM318560 extract	total_RNA	P-G12688-3	GSE12688GSM318560 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repA tech rep2 (Inoc12A.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repA tech rep2 (Inoc12A.2)	GSM318560.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318563	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318563 sample	P-G12688-4	GSE12688GSM318563 extract	total_RNA	P-G12688-3	GSE12688GSM318563 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repB tech rep2 (Inoc12B.2.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repB tech rep2 (Inoc12B.2.2)	GSM318563.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318564	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318564 sample	P-G12688-4	GSE12688GSM318564 extract	total_RNA	P-G12688-3	GSE12688GSM318564 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repB tech rep3 (Inoc12B.2.3)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repB tech rep3 (Inoc12B.2.3)	GSM318564.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318562	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318562 sample	P-G12688-4	GSE12688GSM318562 extract	total_RNA	P-G12688-3	GSE12688GSM318562 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repB tech rep1 (Inoc12B.2.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repB tech rep1 (Inoc12B.2.1)	GSM318562.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318569	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318569 sample	P-G12688-4	GSE12688GSM318569 extract	total_RNA	P-G12688-3	GSE12688GSM318569 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repA tech rep2 (Mock12A.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repA tech rep2 (Mock12A.2)	GSM318569.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318568	Ovis aries	primary ovine microglial cells sham inoculated with PrPC:  Mock infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318568 sample	P-G12688-4	GSE12688GSM318568 extract	total_RNA	P-G12688-3	GSE12688GSM318568 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPC bio repA tech rep1 (Mock12A.1)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPC bio repA tech rep1 (Mock12A.1)	GSM318568.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip
GSE12688GSM318566	Ovis aries	primary ovine microglial cells inoculated with PrPSc:  PrPSc infected primary ovine microglial cells. Primary ovine microglia	P-G12688-2	P-G12688-1	GSE12688GSM318566 sample	P-G12688-4	GSE12688GSM318566 extract	total_RNA	P-G12688-3	GSE12688GSM318566 LE	biotin	synthetic_RNA	Affymetrix:Protocol:Hybridization-Unknown	Primary ovine microglia PrPSc bio repC tech rep2 (Inoc12C.2)	A-AFFY-128	P-AFFY-6	Primary ovine microglia PrPSc bio repC tech rep2 (Inoc12C.2)	GSM318566.CEL	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.raw.1.zip	E-GEOD-12688-processed-data-1682599368.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-12688/E-GEOD-12688.processed.1.zip