Source Name Comment [Sample_characteristics] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Comment [Sample_characteristics] Comment [Sample_characteristics] Comment [Sample_characteristics] Comment [Sample_characteristics] Comment [Sample_description] Comment [Sample_source_name] Comment [Sample_title] Characteristics[Organism] Term Source REF Term Accession Number Characteristics[organism part] Protocol REF Extract Name Comment [INSTRUMENT_MODEL] Comment [LIBRARY_SELECTION] Comment [LIBRARY_SOURCE] Comment [LIBRARY_STRATEGY] Material Type Assay Name Technology Type Comment [ENA_EXPERIMENT] Comment [Platform_title] Protocol REF Scan Name Comment [ENA_RUN] Comment [FASTQ_URI] Protocol REF Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] Normalization Name Derived Array Data File Comment [Derived ArrayExpress FTP file] GSM286613 1 Drosophila melanogaster 0-1hr embryo small RNAs Drosophila melanogaster 0-1hr embryo 0-1hr embryo #1 Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-12 GSM286613 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286613 assay SRX029077 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069840 SRR069840 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069840/SRR069840.fastq.gz P-GSE11624-2 GSM286613_sample_table.txt norm GSM286613_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.2.zip GSM286611 1 Drosophila melanogaster 6-10hr embryo small RNAs Drosophila melanogaster 6-10hr embryo 6-10hr embryo #1 Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-14 GSM286611 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286611 assay SRX029076 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069839 SRR069839 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069839/SRR069839.fastq.gz P-GSE11624-2 GSM286611_sample_table.txt norm GSM286611_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.2.zip GSM286607 1 Drosophila melanogaster 6-10hr embryo small RNAs Drosophila melanogaster 6-10hr embryo 6-10hr embryo Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-14 GSM286607 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286607 assay SRX029075 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069838 SRR069838 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069838/SRR069838.fastq.gz P-GSE11624-2 GSM286607_sample_table.txt norm GSM286607_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.2.zip GSM286606 1 Drosophila melanogaster 2-6hr embryo small RNAs Drosophila melanogaster 2-6hr embryo 2-6hr embryo #1 Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-13 GSM286606 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286606 assay Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 P-GSE11624-2 GSM286606.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.2.zip GSM286606_sample_table.txt norm GSM286606_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.1.zip GSM286605 1 Drosophila melanogaster 2-6hr embryo small RNAs Drosophila melanogaster 2-6hr embryo 2-6hr embryo Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-13 GSM286605 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286605 assay Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 P-GSE11624-2 GSM286605.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM286605_sample_table.txt norm GSM286605_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.1.zip GSM286604 1 Drosophila melanogaster 0-1hr embryo small RNAs Drosophila melanogaster 0-1hr embryo 0-1hr embryo Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-12 GSM286604 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286604 assay Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 P-GSE11624-2 GSM286604.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM286604_sample_table.txt norm GSM286604_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.1.zip GSM286603 1 Drosophila melanogaster female body small RNAs Drosophila melanogaster female body Female body Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-11 GSM286603 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286603 assay SRX029074 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069837 SRR069837 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069837/SRR069837.fastq.gz P-GSE11624-2 GSM286603_sample_table.txt norm GSM286603_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM286602 1 Drosophila melanogaster male body small RNAs Drosophila melanogaster male body Male body Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-10 GSM286602 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286602 assay SRX029073 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069836 SRR069836 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069836/SRR069836.fastq.gz P-GSE11624-2 GSM286602_sample_table.txt norm GSM286602_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM286601 1 male heads small RNAs Drosophila melanogaster male heads Male heads Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-9 GSM286601 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM286601 assay SRX029072 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069835 SRR069835 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069835/SRR069835.fastq.gz P-GSE11624-2 GSM286601_sample_table.txt norm GSM286601_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM275691 1 Drosophila melanogaster imaginal disc small RNAs Drosophila melanogaster imaginal disc Imaginal disc Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-8 GSM275691 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM275691 assay SRX029069 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069832 SRR069832 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069832/SRR069832.fastq.gz P-GSE11624-1 GSM275691_sample_table.txt norm GSM275691_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM272653 1 D. melanogaster KC cells small RNAs Drosophila melanogaster KC cell KC cells Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-7 GSM272653 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM272653 assay SRX029068 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069831 SRR069831 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069831/SRR069831.fastq.gz P-GSE11624-1 GSM272653_sample_table.txt norm GSM272653_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM272652 1 D. melanogaster S2 cells from Gerard Rubin's lab small RNAs Drosophila melanogaster S2 cell Drosophila melanogaster S2-GMR, first biological replicate Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-6 GSM272652 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM272652 assay SRX029067 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069830 SRR069830 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069830/SRR069830.fastq.gz P-GSE11624-1 GSM272652_sample_table.txt norm GSM272652_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM272651 1 mix of 4 populations: 1. S2 cells 2. S2 cells treated with ecdysone for 48 hrs. 3. KC cells 4. KC cells treated with ecdysone for 48 hrs. small RNAs Drosophila melanogaster S2 and KC cell S2 and KC cells Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 P-GSE11624-5 GSM272651 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM272651 assay SRX029066 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR069829 SRR069829 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR069/SRR069829/SRR069829.fastq.gz P-GSE11624-1 GSM272651_sample_table.txt norm GSM272651_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip GSM240749 1 Quality scores in the supplementary file for GSM240749 are undefined. Quality of the bases assessed by (1) identifying for the sequenced linker, which is a known sequence, and (2) mapping the clipped sequence to the genome and taking only perfect hits. Drosophila melanogaster female heads Female heads Drosophila melanogaster EFO http://purl.org/obo/owl/NCBITaxon#NCBITaxon_7227 female heads P-GSE11624-3 GSM240749 extract 1 Illumina Genome Analyzer other transcriptomic OTHER total RNA GSM240749 assay SRX028578 Illumina Genome Analyzer (Drosophila melanogaster) P-GSE11624-4 SRR068998 SRR068998 ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR068/SRR068998/SRR068998.fastq.gz P-GSE11624-1 GSM240749_sample_table.txt norm GSM240749_sample_table.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11624/E-GEOD-11624.processed.3.zip