Source Name	Comment [Sample_characteristics]	Comment [Sample_description]	Comment [Sample_source_name]	Characteristics[Organism]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Extract Name	Material Type	Protocol REF	Term Source REF	Labeled Extract Name	Label	Protocol REF	Term Source REF	Hybridization Name	Array Design REF	Term Source REF	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Term Source REF	Protocol REF	Term Source REF	Normalization Name	Derived Array Data File	Comment [Derived ArrayExpress FTP file]
GSM280624 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280624 extract 1	total RNA	P-GSE11124-6	  	GSM280624 LE 1	Cy5	P-GSE11124-7	  	GSM280624	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280624.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280624_sample_table.txt norm	GSM280624_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280624 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280624 extract 2	total RNA	P-GSE11124-6	  	GSM280624 LE 2	Cy3	P-GSE11124-7	  	GSM280624	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280624.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280624_sample_table.txt norm	GSM280624_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280622 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280622 extract 2	total RNA	P-GSE11124-6	  	GSM280622 LE 2	Cy5	P-GSE11124-7	  	GSM280622	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280622.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280622_sample_table.txt norm	GSM280622_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280622 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280622 extract 1	total RNA	P-GSE11124-6	  	GSM280622 LE 1	Cy3	P-GSE11124-7	  	GSM280622	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280622.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280622_sample_table.txt norm	GSM280622_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280621 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280621 extract 1	total RNA	P-GSE11124-6	  	GSM280621 LE 1	Cy5	P-GSE11124-7	  	GSM280621	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280621.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280621_sample_table.txt norm	GSM280621_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280621 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280621 extract 2	total RNA	P-GSE11124-6	  	GSM280621 LE 2	Cy3	P-GSE11124-7	  	GSM280621	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280621.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280621_sample_table.txt norm	GSM280621_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280620 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280620 extract 1	total RNA	P-GSE11124-6	  	GSM280620 LE 1	Cy3	P-GSE11124-7	  	GSM280620	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280620.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280620_sample_table.txt norm	GSM280620_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280620 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO treated	Saccharomyces cerevisiae	P-GSE11124-10	  	P-GSE11124-11	  	P-GSE11124-5	  	  	  	  	  	  	  	GSM280620 extract 2	total RNA	P-GSE11124-6	  	GSM280620 LE 2	Cy5	P-GSE11124-7	  	GSM280620	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280620.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280620_sample_table.txt norm	GSM280620_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280619 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280619 extract 2	total RNA	P-GSE11124-6	  	GSM280619 LE 2	Cy3	P-GSE11124-7	  	GSM280619	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280619.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280619_sample_table.txt norm	GSM280619_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280619 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280619 extract 1	total RNA	P-GSE11124-6	  	GSM280619 LE 1	Cy5	P-GSE11124-7	  	GSM280619	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280619.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280619_sample_table.txt norm	GSM280619_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280618 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280618 extract 1	total RNA	P-GSE11124-6	  	GSM280618 LE 1	Cy3	P-GSE11124-7	  	GSM280618	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280618.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280618_sample_table.txt norm	GSM280618_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280618 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280618 extract 2	total RNA	P-GSE11124-6	  	GSM280618 LE 2	Cy5	P-GSE11124-7	  	GSM280618	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280618.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280618_sample_table.txt norm	GSM280618_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280617 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280617 extract 2	total RNA	P-GSE11124-6	  	GSM280617 LE 2	Cy3	P-GSE11124-7	  	GSM280617	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280617.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280617_sample_table.txt norm	GSM280617_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280617 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280617 extract 1	total RNA	P-GSE11124-6	  	GSM280617 LE 1	Cy5	P-GSE11124-7	  	GSM280617	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280617.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	P-GSE11124-2	  	  	  	GSM280617_sample_table.txt norm	GSM280617_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280616 2	Strain YPH500 Delta Sub1	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Delta SUB1, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280616 extract 2	total RNA	P-GSE11124-6	  	GSM280616 LE 2	Cy5	P-GSE11124-7	  	GSM280616	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280616.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280616_sample_table.txt norm	GSM280616_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip
GSM280616 1	Strain YPH500	Wild-type (yPH500) and sub1Δ cells were grown to exponential phase (OD600 = 1) in YPD medium at 30°C and an aliquot of cells was collected to serve as the time-zero reference. Total RNA extraction and microarray hybridization were performed as previously described (Conesa et al., 2005).	Wild-Type, 4NQO untreated	Saccharomyces cerevisiae	  	  	  	  	  	  	P-GSE11124-3	  	P-GSE11124-4	  	P-GSE11124-5	  	GSM280616 extract 1	total RNA	P-GSE11124-6	  	GSM280616 LE 1	Cy3	P-GSE11124-7	  	GSM280616	A-GEOD-1531	  	P-GSE11124-8	  	P-GSE11124-9	  	GSM280616.gpr	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.raw.1.zip	  	  	P-GSE11124-1	  	GSM280616_sample_table.txt norm	GSM280616_sample_table.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/GEOD/E-GEOD-11124/E-GEOD-11124.processed.1.zip