Source Name	Characteristics[genotype]	Characteristics[organism]	Characteristics[strain]	Protocol REF	Extract Name	Material Type	Term Source REF	Protocol REF	Labeled Extract Name	Label	Protocol REF	Assay Name	Technology Type	Array Design REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Factor Value [genotype]
H37Rv WT A1	wild type genotype	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv WT A1 RNA (35410)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv WT A1 (35411)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	WT A1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_1_1.txt	TB_252754310039_S01_BUGS1_107_Aug10_1_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	wild type genotype
H37Rv WT C1	wild type genotype	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv WT C1 RNA (35416)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv WT C1 (35417)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	WT C1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_2_2.txt	TB_252754310039_S01_BUGS1_107_Aug10_2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	wild type genotype
H37Rv glnD- B1	glnD-	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv glnD- RNA B1 (35422)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv glnD- B1 (35423)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	glnD- B1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_2_1.txt	TB_252754310039_S01_BUGS1_107_Aug10_2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	glnD-
H37Rv glnD- A1	glnD-	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv glnD- RNA A1 (35419)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv glnD- A1 (35420)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	glnD- A1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_1_2.txt	TB_252754310039_S01_BUGS1_107_Aug10_1_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	glnD-
H37Rv WT B1	wild type genotype	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv WT B1 RNA (35413)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv WT B1 (35414)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	WT B1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_1_3.txt	TB_252754310039_S01_BUGS1_107_Aug10_1_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	wild type genotype
H37Rv glnD- C1	glnD-	Mycobacterium tuberculosis	H37Rv	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1190	H37Rv glnD- RNA C1 (35425)	total RNA	EFO	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1191	Cy3 H37Rv glnD- C1 (35426)	Cy3	bugs.sgul.ac.uk:BuG@Sbase/Protocol:1192	glnD- C1	array assay	A-BUGS-41	TB_252754310039_S01_BUGS1_107_Aug10_2_3.txt	TB_252754310039_S01_BUGS1_107_Aug10_2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-135/E-BUGS-135.raw.1.zip	glnD-