Source Name	Material Type	Characteristics[Organism]	Characteristics[Genotype]	Characteristics[GeneticModification]	Protocol REF	Parameter Value[temperature]	Parameter Value[time]	Parameter Value[media]	Parameter Value[atmosphere]	Sample Name	Material Type	Protocol REF	Parameter Value[bacteria harvested]	Parameter Value[RNA stabilisation]	Parameter Value[quantitation method]	Parameter Value[yield]	Extract Name	Material Type	Protocol REF	Parameter Value[RNA quantity]	Parameter Value[fluorescence label]	Parameter Value[DNA quantity]	Parameter Value[fluorescent label]	Labeled Extract Name	Label	Material Type	Protocol REF	Parameter Value[hybridization volume]	Parameter Value[hybridization temperature]	Parameter Value[hybridization time]	Parameter Value[Wash A temperature]	Parameter Value[Wash A time]	Parameter Value[Wash B temperature]	Parameter Value[Wash B time 1]	Parameter Value[Wash B time 2]	Hybridization Name	Array Design REF	Protocol REF	Protocol REF	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Parameter Value[Data Transformation]	Parameter Value[Per Spot and Per Chip Normalization]	Parameter Value[Per Spot and Per Chip % Smoothing]	Parameter Value[Per Spot and Per Chip Cutoff]	Parameter Value[Per Spot Normalization]	Parameter Value[Per Spot Cutoff]	Parameter Value[Per Chip Normalization]	Parameter Value[Per Chip Positive Control Genes]	Parameter Value[Per Chip Percentile]	Parameter Value[Per Chip Flag Restrict]	Parameter Value[Per Chip Measurement Restrict]	Parameter Value[Per Chip Measurement Restrict Cutoff]	Parameter Value[Per Gene Normalization]	Parameter Value[Per Gene Average Measurement]	Parameter Value[Per Gene Samples to Normalize]	Parameter Value[Per Gene Control Samples]	Parameter Value[Per Gene Flag Restrict]	Parameter Value[Per Gene Measurement Restrict]	Parameter Value[Per Gene Measurement Restrict Cutoff]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Protocol REF	Parameter Value[Gene list]	Parameter Value[False discovery rate]	Parameter Value[Multiple testing correction]	Parameter Value[Filter]	Derived Array Data File	Comment [Derived ArrayExpress FTP file]	Factor Value[GENOTYPE]
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy5_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy5_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H Cj1556 mutant	whole_organism	Campylobacter jejuni	Cj1556- mutant	gene_knock_out	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	Cj1556 mutant culture (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	Cj1556 mutant RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 Cj1556 mutant (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	Cj1556- mutant
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (C)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (C)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (C1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (A)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (A)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (A1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H WT	whole_organism	Campylobacter jejuni	wild_type	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	WT RNA (B)	whole_organism	C. jejuni RNA extraction	10	RNA protect	Aglient BioanalyserRNA 600	10	WT RNA (B)	total_RNA	BuG@S Cy5 RNA labelling	10	Cy5	  	  	Cy5 WT (B1)	Cy5	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	wild_type
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (C)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (C)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (C1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (C)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (C)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (C1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (C)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (C)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (C1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (C)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (C)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (C1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43402	Cj53-24-1556-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (E)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (E)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (E1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (E)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (E)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (E1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (E)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (E)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (E1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (E)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (E)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (E1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43430	Cj53-19-WT-2-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (F)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (F)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (F1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (F)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (F)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (F1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (F)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (F)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (F1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (F)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (F)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (F1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43432	Cj53-35-11168HM-1-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (B)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (B)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (B1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy5_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (B)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (B)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (B1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy5_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (B)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (B)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (B1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (B)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (B)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (B1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43401	Cj53-28-1556-2-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (D)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (D)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (D1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (D)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (D)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (D1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy5_60.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (D)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (D)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (D1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (D)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (D)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (D1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43429	Cj53-18-WT-1-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	WT.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (A)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (A)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (A1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (A)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (A)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (A1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy3_80.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (A)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (A)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (A1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	downregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control
Campylobacter jejuni NCTC 11168H control gDNA	whole_organism	Campylobacter jejuni	control	  	C.jejuni growth	37	48	Columbia blood agar 	microaerobic 	NCTC 11168H gDNA (A)	whole_organism	C. jejuni DNA extraction	1	  	spec	1	NCTC 11168H gDNA (A)	genomic_DNA	BuG@S Cy3 DNA Labelling	  	  	2	Cy3	Cy3 NCTC 11168H (A1)	Cy3	synthetic_DNA	BuG@S hybridization	45	65	20	65	2	22	2	2	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	A-BUGS-9	BuG@S ImaGene upload	BuG@S Affymetrix 418 scanning	bugs.sgul.ac.uk:BuG@Sbase/PhysicalBioAssay:43400	Cj53-25-1556-3-late-log-phaseCy5_70.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.raw.1.zip	C jejuni Genespring normalization	Set measurements < 0.01 to 0.01	Intensity dependent (Lowess)	20	10	Divide by control channel	10	Normalize to 50th percentile	DBA:0000: gene list	50	Anything but absent	Raw signal	10	Normalize to specific samples	Mean	All samples	Control sample name	Anything but absent	Raw data	10	1556.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.2.zip	ANOVA	all genes	0.05	Benjamini-Hochberg	upregulation	upregulated.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-119/E-BUGS-119.processed.1.zip	control