Source Name	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [Genotype]	Characteristics [DevelopmentalStage]	Characteristics [ABRC seed stock id]	Characteristics [Ecotype]	Provider	Protocol REF	Protocol REF	Parameter Value [light hours]	Unit [TimeUnit]	Parameter Value [day temperature]	Unit [TemperatureUnit]	Parameter Value [day humidity]	Parameter Value [media]	Parameter Value [night temperature]	Parameter Value [light intensity]	Parameter Value [night humidity]	Parameter Value [light source]	Sample Name	Protocol REF	Protocol REF	Parameter Value [Extracted product]	Parameter Value [Amplification]	Extract Name	Material Type	Protocol REF	Parameter Value [Used Label]	Parameter Value [Amplification]	Parameter Value [Amount of nucleic acid labeled]	Labeled Extract Name	Label	Material Type	Protocol REF	Parameter Value [Time]	Unit [TimeUnit]	Parameter Value [Volume]	Unit [VolumeUnit]	Parameter Value [Temperature]	Unit [TemperatureUnit]	Parameter Value [Chamber type]	Parameter Value [Quantity of label target used]	Unit [MassUnit]	Hybridization Name	Array Design REF	Comment [Array Design URI]	Protocol REF	Factor Value [genotype]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
WT-4CT	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	wild_type	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	WT-4CT	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_WT-4CT	total_RNA	P-CAGE-25527	Cy5	RNA polymerases	7.5	L_WT-4CT	Cy5	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-4CT_AtMYC2-4Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	wild_type	H_WT-4CT_AtMYC2-4Exp	35SAtMCY2_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
AtMYC2-4Exp	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	ATMYC2 over-expression	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	AtMYC2-4Exp	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_AtMYC2-4Exp	total_RNA	P-CAGE-25508	Cy3	RNA polymerases	7.5	L_AtMYC2-4Exp	Cy3	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-4CT_AtMYC2-4Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	ATMYC2 over-expression	H_WT-4CT_AtMYC2-4Exp	35SAtMCY2_4.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
AtMYC2-3Exp	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	ATMYC2 over-expression	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	AtMYC2-3Exp	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_AtMYC2-3Exp	total_RNA	P-CAGE-25508	Cy3	RNA polymerases	7.5	L_AtMYC2-3Exp	Cy3	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-3CT_AtMYC2-3Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	ATMYC2 over-expression	H_WT-3CT_AtMYC2-3Exp	35SAtMCY2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
WT-3CT	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	wild_type	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	WT-3CT	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_WT-3CT	total_RNA	P-CAGE-25527	Cy5	RNA polymerases	7.5	L_WT-3CT	Cy5	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-3CT_AtMYC2-3Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	wild_type	H_WT-3CT_AtMYC2-3Exp	35SAtMCY2_3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
WT-2CT	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	wild_type	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	WT-2CT	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_WT-2CT	total_RNA	P-CAGE-25508	Cy3	RNA polymerases	7.5	L_WT-2CT	Cy3	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-2CT_AtMYC2-2Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	wild_type	H_WT-2CT_AtMYC2-2Exp	35SAtMCY2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
AtMYC2-2Exp	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	ATMYC2 over-expression	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	AtMYC2-2Exp	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_AtMYC2-2Exp	total_RNA	P-CAGE-25527	Cy5	RNA polymerases	7.5	L_AtMYC2-2Exp	Cy5	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-2CT_AtMYC2-2Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	ATMYC2 over-expression	H_WT-2CT_AtMYC2-2Exp	35SAtMCY2_2.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
AtMYC2-1Exp	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	ATMYC2 over-expression	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	AtMYC2-1Exp	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_AtMYC2-1Exp	total_RNA	P-CAGE-25527	Cy5	RNA polymerases	7.5	L_AtMYC2-1Exp	Cy5	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-1CT_AtMYC2-1Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	ATMYC2 over-expression	H_WT-1CT_AtMYC2-1Exp	35SAtMCY2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip
WT-1CT	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	wild_type	1.02 Boyes key	CS22625	Columbia-0	ABRC	P-CAGE-25504	P-CAGE-25503	16	h	25	degree_C	40	542	colonies	100	40	530	WT-1CT	P-CAGE-25505	P-CAGE-25507	total RNA	none	E_WT-1CT	total_RNA	P-CAGE-25508	Cy3	RNA polymerases	7.5	L_WT-1CT	Cy3	total_RNA	P-CAGE-25509	16	h	100	uL	37	degree_C	Arrylt Hybridization Casette	250	pmoles	H_WT-1CT_AtMYC2-1Exp	A-ATMX-4	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-4	P-CAGE-25510	wild_type	H_WT-1CT_AtMYC2-1Exp	35SAtMCY2_1.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.raw.1.zip	P-CAGE-25513	results_35SAtMYC2._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-16/E-ATMX-16.processed.1.zip