Source Name	Characteristics [NASC seed stock id]	Characteristics [Organism]	Term Source REF	Term Accession Number	Characteristics [DevelopmentalStage]	Characteristics [Ecotype]	Provider	Protocol REF	Protocol REF	Parameter Value [media]	Parameter Value [day humidity]	Parameter Value [light source]	Parameter Value [day temperature]	Unit [TemperatureUnit]	Parameter Value [night humidity]	Parameter Value [light intensity]	Parameter Value [light hours]	Unit [TimeUnit]	Parameter Value [night temperature]	Sample Name	Protocol REF	Parameter Value [Amplification]	Parameter Value [Extracted product]	Extract Name	Material Type	Protocol REF	Parameter Value [Amount of nucleic acid labeled]	Parameter Value [Used Label]	Parameter Value [Amplification]	Labeled Extract Name	Label	Material Type	Protocol REF	Parameter Value [Time]	Unit [TimeUnit]	Parameter Value [Chamber type]	Parameter Value [Volume]	Unit [VolumeUnit]	Parameter Value [Quantity of label target used]	Unit [QuantityUnit]	Parameter Value [Temperature]	Unit [TemperatureUnit]	Hybridization Name	Array Design REF	Comment [Array Design URI]	Protocol REF	Factor Value [compound]	Factor Value [dose]	Unit [ConcentrationUnit]	Scan Name	Array Data File	Comment [ArrayExpress FTP file]	Protocol REF	Derived Array Data Matrix File	Comment [Derived ArrayExpress FTP file]
SAMPLE_Control3B	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control3B	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control3B	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_Control3B_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	068-Control3B_Cy5vs7B_Cy3	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	068-Control3B_Cy5vs7B_Cy3	068-Control3B_Cy5vs7B_Cy3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_7B	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_7B	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_7B	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_7B_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	068-Control3B_Cy5vs7B_Cy3	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	068-Control3B_Cy5vs7B_Cy3	068-Control3B_Cy5vs7B_Cy3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_6C	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_6C	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_6C	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_6C_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	065-Control2C_Cy3vs6C_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	065-Control2C_Cy3vs6C_Cy5	065-Control2C_Cy3vs6C_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_Control2C	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control2C	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control2C	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_Control2C_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	065-Control2C_Cy3vs6C_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	065-Control2C_Cy3vs6C_Cy5	065-Control2C_Cy3vs6C_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_8C	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_8C	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_8C	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_8C_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	069-Control4C_Cy3vs8C_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	069-Control4C_Cy3vs8C_Cy5	069-Control4C_Cy3vs8C_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_Control4C	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control4C	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control4C	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_Control4C_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	069-Control4C_Cy3vs8C_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	069-Control4C_Cy3vs8C_Cy5	069-Control4C_Cy3vs8C_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_Control4A	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control4A	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control4A	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_Control4A_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	070-Control4A_Cy3vs8A_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	070-Control4A_Cy3vs8A_Cy5	070-Control4A_Cy3vs8A_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_8A	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_8A	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_8A	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_8A_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	070-Control4A_Cy3vs8A_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	070-Control4A_Cy3vs8A_Cy5	070-Control4A_Cy3vs8A_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_Control3A	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control3A	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control3A	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_Control3A_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	067-Control3A_Cy3vs7A_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	067-Control3A_Cy3vs7A_Cy5	067-Control3A_Cy3vs7A_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_7A	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_7A	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_7A	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_7A_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	067-Control3A_Cy3vs7A_Cy5	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	067-Control3A_Cy3vs7A_Cy5	067-Control3A_Cy3vs7A_Cy5.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_Control4B	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_Control4B	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_Control4B	total_RNA	P-CAGE-25491	7.5	Cy5	none	L_SAMPLE_Control4B_Cy5	Cy5	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	071-Control4B_Cy5vs8B_Cy3	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	0	uM	071-Control4B_Cy5vs8B_Cy3	071-Control4B_Cy5vs8B_Cy3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip
SAMPLE_8B	N1093	Arabidopsis thaliana	EFO	http://purl.org/obo/owl/NCBITaxon#NCBITaxon_3702	1.02 Boyes key	Columbia-0	NASC	P-CAGE-25483	P-CAGE-25482	542	70	530	22	degree_C	70	250	16	h	synthetic Oligo-nucleotide	SAMPLE_8B	P-CAGE-25485	MessageAmp TM II aRNA kit (Ambion) - ArrayScript	total RNA	E_SAMPLE_8B	total_RNA	P-CAGE-25486	7.5	Cy3	none	L_SAMPLE_8B_Cy3	Cy3	total_RNA	P-CAGE-25487	16	h	Arrylt Hybridization Casette	90	uL	200	pmol	37	degree_C	071-Control4B_Cy5vs8B_Cy3	A-ATMX-3	http://www.ebi.ac.uk/aerep/result?queryFor=PhysicalArrayDesign&aAccession=A-ATMX-3	P-CAGE-25488	9-hydroxyoctadecatrienoic acid	25	uM	071-Control4B_Cy5vs8B_Cy3	071-Control4B_Cy5vs8B_Cy3.txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.raw.1.zip	P-CAGE-25490	Combined_file._txt	ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/ATMX/E-ATMX-14/E-ATMX-14.processed.1.zip