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Showing 251 - 500 of 70512 experiments
AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
Transcriptional response of LPS-stimulated monocyte-derived macrophages in the presence or absence of the anti-TNF agonist Etanercept
transcription profiling by array
Homo sapiens
18
04/08/2017
158
-
Whole blood transcriptional profiling of healthy volunteers and rheumatoid arthritis patients treated with methotrexate or anti-TNF therapy after ex vivo whole blood stimulation with TNF
transcription profiling by array
Homo sapiens
16
04/08/2017
223
-
Transcriptional profiling of the tuberculin skin test in healthy volunteers and in rheumatoid arthritis patients treated with methotrexate or anti-TNF therapy
transcription profiling by array
Homo sapiens
25
04/08/2017
146
-
Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes of metabolic syndrome in rats
RNA-seq of coding RNA
Rattus norvegicus
20
03/08/2017
ENA
123
-
Identification of high-affinity microRNA targets
RIP-seq
Mus musculus
26
03/08/2017
ENA
98
-
RNA-seq analysis of C. elegans CPEB homolog mutants
RNA-seq of coding RNA
Caenorhabditis elegans
27
03/08/2017
-
ENA
106
-
iCLIP analysis of RNA binding sites of Stau2 protein in mouse brain cells
CLIP-seq
Mus musculus
6
02/08/2017
-
ENA
97
-
RNAseq of primary human gallbladder cells, reprogrammed human gallbladder cells, and human pancreatic beta cells
RNA-seq of coding RNA
Homo sapiens
18
02/08/2017
ENA
114
-
microRNAseq of primary human gallbladder cells, reprogrammed human gallbladder cells, and human pancreatic beta cells
microRNA profiling by high throughput sequencing
Homo sapiens
4
02/08/2017
ENA
80
-
Strategies for in vivo screening and mitigation of hepatotoxicity associated with antisense drugs
RNA-seq of coding RNA
Mus musculus
79
02/08/2017
-
ENA
162
-
RNA-Seq of bacteriophage S-PM2d infecting Synechococcus spp. WH7803 at high light and low light treatments
RNA-seq of coding RNA
Synechococcus phage S-PM2
6
01/08/2017
-
ENA
57
-
RNA-seq of human tissues
RNA-seq of coding RNA
Homo sapiens
14
01/08/2017
-
ENA
203
-
RNA-seq of HEK293T cell line
RNA-seq of coding RNA
Homo sapiens
136
01/08/2017
-
ENA
308
-
Targeted sequencing of 86 regulatory elements and 12 breast cancer genes
DNA-seq
Homo sapiens
290
01/08/2017
-
ENA
412
-
ATAC-seq of HEK293T cell line
ATAC-seq
Homo sapiens
14
01/08/2017
-
ENA
185
-
Mutant Cd36 and Wars2 genes affect mass and function of brown adipose tissue in spontaneously hypertensive rats
transcription profiling by array
Rattus norvegicus
128
01/08/2017
-
90
-
Dual RNA-seq of M. tuberculosis H37Rv infecting macrophage-like THP-1 cells during 48h
RNA-seq of coding RNA
Homo sapiens, Mycobacterium tuberculosis H37Rv
42
01/08/2017
-
ENA
260
-
Methylation profiling of end-stage renal disease patients and healthy controls
methylation profiling by array
Homo sapiens
144
01/08/2017
-
148
-
Global mRNA transcriptome analysis of wild type and Hfq mutant strains of Serratia marcescens by RNAseq
RNA-seq of coding RNA
Serratia marcescens
8
01/08/2017
-
ENA
56
-
Comparison of gene expression profiling among high-grade ovarian epithelial cancer, ovarian epithelium and fallopian tube
transcription profiling by array
Homo sapiens
12
01/08/2017
-
139
-
Cross-tissue transcriptomic analysis of human secondary lymphoid organ residing ILC3 reveals a default quiescent state in the absence of inflammation
RNA-seq of coding RNA
Homo sapiens
20
31/07/2017
-
75
-
RNA-seq analysis of date-palms treated with stress hormone ABA compared to controls
RNA-seq of coding RNA
Phoenix dactylifera
8
31/07/2017
-
ENA
111
-
RNAseq of circulating neutrophils in peripartal grazing dairy cows divergent in metabolic health
RNA-seq of coding RNA
Bos taurus
120
30/07/2017
-
ENA
156
-
Transcriptional profiling by array of mouse hearts from animals with heterozygous truncation of Igf1 gene (HZ), or HZ treated with low doses of IGF-1 (substitutive therapy) against wild-type control
transcription profiling by array
Mus musculus
3
30/07/2017
-
61
-
Global Expression profiling of mutant mouse lineage negative progenitors
transcription profiling by array
Mus musculus
10
30/07/2017
-
72
-
Global Expression profiling of mutant mouse lineage negative progenitors
transcription profiling by array
Mus musculus
33
30/07/2017
-
98
-
Global Expression profiling of mutant mouse multipotent progenitors
transcription profiling by array
Mus musculus
28
30/07/2017
-
117
-
Array Comparative Hybridisation of Acute Myeloid Leukemia's generated from mouse models of Npm1cA/+, compound Npm1cA/+; NrasG12D/+ and Npm1cA/+;Flt3ITD/+ myeloid leukemia
comparative genomic hybridization by array
Mus musculus
25
30/07/2017
-
167
-
Effect of a KRAS peptide nucleic acid clamp on the Ion Torrent sequencing protocol
DNA-seq
Homo sapiens
36
29/07/2017
ENA
131
-
RNA-seq analyses of most resistance Indica Rice varieties (Oryza sativa L.) leaves tissue under water-deficit condition
RNA-seq of coding RNA
Oryza sativa Indica Group
4
27/07/2017
-
ENA
85
-
Transcription profiling by microarray of lncRNA affected by EGF stimulation of MCF10A cells
transcription profiling by array
Homo sapiens
15
27/07/2017
138
-
Genes affected by manipulation of LIMT, a novel metastasis inhibiting lncRNA is suppressed by EGF and down-regulated in aggressive breast cancer
transcription profiling by array
Homo sapiens
12
27/07/2017
134
-
Microarray analysis of the effect of ppGpp, cdiAMP, and cdiGMP on Saccharomyces cerevisiae
transcription profiling by array
Saccharomyces cerevisiae
24
26/07/2017
83
-
RNA-seq of coding RNA from DDX6 knockout human haploid (HAP1) cells
RNA-seq of coding RNA
Homo sapiens
8
25/07/2017
ENA
159
-
Haploid genome-wide screens for essential components and negative regulators of interferon lambda signaling in human cells
DNA-seq
Homo sapiens
3
25/07/2017
-
ENA
125
-
RNA-seq of coding RNA from USP14 knockout human haploid (HAP1) cells
RNA-seq of coding RNA
Homo sapiens
8
25/07/2017
ENA
119
-
Analysis of mitochondrial gene expression with Ribosome Profiling
RNA-seq of coding RNA
Homo sapiens
3
25/07/2017
-
ENA
108
-
Cytogenetics 2.7M and Cytoscan HD 2.8M Microarrays in autistic families in the Lebanese population
comparative genomic hybridization by array
Homo sapiens
142
24/07/2017
-
160
-
RNA localization is a key determinant of neurite-enriched proteome - Riboseq
translation profiling
Mus musculus
6
23/07/2017
-
ENA
101
-
RNA localization is a key determinant of neurite-enriched proteome - RNAseq
RNA-seq of coding RNA
Mus musculus
6
23/07/2017
-
ENA
135
-
Whole transcriptome profiling of Esophageal adenocarcinoma and Barrett's
RNA-seq of coding RNA
Homo sapiens
63
23/07/2017
-
ENA
267
Transcriptome profiling by microarray of Caenorhabditis elegans MT2124 x CB4856 RILs used for eQTL mapping
transcription profiling by array
Caenorhabditis elegans
24
21/07/2017
-
117
-
RNA-seq of different Plodia interpunctella tissues for males and females
RNA-seq of coding RNA
Plodia interpunctella
16
19/07/2017
-
ENA
129
-
RNA-seq experiment of Drosophila melanogaster larvae reared on Aspergillus nidulans infested breeding substrate
RNA-seq of coding RNA
Drosophila melanogaster
131
19/07/2017
-
ENA
132
-
Transcription profiling by array of rice cell line N1 treated with herbicide safener fenclorim and its analogue CMP
transcription profiling by array
Oryza sativa Japonica Group
18
18/07/2017
-
101
-
mRNA time-course transcription profiling of bacteriocytes and gut tissue of pea aphids reared on standard artificial diet (AP3) and artificial diet depleted in Tyr and Phe (YFØ)
transcription profiling by array
Acyrthosiphon pisum
66
18/07/2017
-
116
-
RNA-seq of HEK293T cells treated with control b-globin siRNA and Pat1b siRNA
RNA-seq of coding RNA
Homo sapiens
8
17/07/2017
-
ENA
161
-
Glucocorticoid receptor ChIP-seq in an immortalized podocyte cell line
ChIP-seq
Homo sapiens
2
17/07/2017
ENA
104
-
Glucocorticoid therapy regulates podocyte motility by inhibition of Rac1
transcription profiling by array
Homo sapiens
6
17/07/2017
92
-
RNA-seq for splenic gene expression in response to Newcastle disease virus challenge in two chicken lines with different disease resistance
RNA-seq of coding RNA
Gallus gallus
31
16/07/2017
-
ENA
122
-
RNA-seq of different Bombyx mori tissues for males and females
RNA-seq of coding RNA
Bombyx mori
12
16/07/2017
-
ENA
72
-
Determination of mRNA half-lives in embryonic mouse skin
RNA-seq of coding RNA
Mus musculus
12
14/07/2017
-
ENA
143
-
Chipseq on Sox18Ragged-mCherry over-expressed zebrafish larvae at 26-28hpf
ChIP-seq
Danio rerio
2
13/07/2017
ENA
76
-
Whole genome expression changes in Candida albicans due to a mutation in transcription factor Grf10
transcription profiling by array
Candida albicans
3
12/07/2017
-
69
-
MicroRNA profiling by arrray of unilaterial and bilateral retinoblastoma tumours from enucleated patients with no chemotherapy history
microRNA profiling by array
Homo sapiens
12
11/07/2017
146
-
Global gene regulation during immunoglobulin class switching in human activated B cells
transcription profiling by array
Homo sapiens
18
11/07/2017
-
91
-
Transcription profiling of paw skin from young and old mice to study the effect of ageing in interfollicular epidermis
transcription profiling by array
Mus musculus
8
11/07/2017
-
99
-
A UNIQUE ENHANCER BOUNDARY COMPLEX DEFINES THE STABLE POISED STATE OF THE MOUSE RIBOSOMAL RNA GENES IN THE ABSENCE OF RRN3, UBF AND RNA POLYMERASE I TRANSCRIPTION
ChIP-seq, DNA-seq
Mus musculus
78
08/07/2017
ENA
215
-
Transcription profiling of oesophageal adenocarcinoma by RNA-seq
RNA-seq of coding RNA
Homo sapiens
6
07/07/2017
-
ENA
141
-
ATAC-seq of oesophageal cell lines and tissue samples
ATAC-seq, DNA-seq
Homo sapiens
11
07/07/2017
ENA
123
-
ETV1 ChIP-seq in OE33 esophageal adenocarcinoma cells
ChIP-seq
Homo sapiens
3
07/07/2017
ENA
132
-
Transcription profiling of oesophageal adenocarcinoma
transcription profiling by array
Homo sapiens
14
07/07/2017
-
171
-
Signatures of inflammation and impending multiple organ dysfunction in the hyperacute phase of trauma: A prospective cohort study
transcription profiling by array
Homo sapiens
118
06/07/2017
306
-
Transcription profiling by array of single and double deletion mutants involved in ribosome assembly
transcription profiling by array
Saccharomyces cerevisiae
22
06/07/2017
113
-
Transcription profiling by array of 60 deletion mutants involved in ribosome assembly
transcription profiling by array
Saccharomyces cerevisiae
107
06/07/2017
186
-
Microarray comparing gene expression changes between control, normoglycaemic mice, and mice expressing the human neonatal diabetes mutation Kir6.2-V59M in pancreatic beta-cells left diabetic for 2 weeks
transcription profiling by array
Mus musculus
8
05/07/2017
-
117
-
Gene expression profiling of biphenotypic acute leukemia
transcription profiling by array
Homo sapiens
12
05/07/2017
-
230
-
Transcription profiling of human glioblastoma cells with EGFR amplification grown in rat xenograft model
transcription profiling by array
Homo sapiens
6
05/07/2017
-
176
-
Transcription profiling by high throughput sequencing of CD8 single positive thymocytes from F5 Rag1KO TCR transgenic mice stimulated with tumor necrosis factor
RNA-seq of coding RNA
Mus musculus
11
05/07/2017
ENA
83
-
Gene expression of IKK1/2 deficient thymocytes
RNA-seq of coding RNA
Mus musculus
7
05/07/2017
ENA
80
-
Acquired TET2 mutation-linked clonal hematopoiesis in FPD/AML patient led to the development of pre-leukemic clone resulting independently in T2-ALL and AML-M0
DNA-seq
Homo sapiens
3
05/07/2017
-
ENA
139
-
Transcription profiling by array of Bacillus amyloliquefaciens FZB42 wildtype and sigD-mutants grown in media supplemented with soil extract or soil extract plus maize root exudates
transcription profiling by array
Bacillus amyloliquefaciens
9
05/07/2017
85
-
Transcription profiling by array of hepatocellular carcinoma cell lines following treatment with STAT3 shRNA and IL-6, IL-27 or IFN-gamma
transcription profiling by array
Homo sapiens
48
05/07/2017
-
223
-
Transcription profiling by array of a human embryonic kidney cell line (HEK-293) expressing mutant or wild type KIT following treatment with stem cell factor
transcription profiling by array
Homo sapiens
18
05/07/2017
-
84
-
microRNA profiling by array of human Autosomal Dominant Polycystic Kidney Disease kidney epithelial cell lines
microRNA profiling by array
Homo sapiens
6
05/07/2017
-
102
-
Gene expression profiling in human ADPKD cell lines
transcription profiling by array
Homo sapiens
6
05/07/2017
-
94
-
Transcriptome analysis of Arabidopsis expressing the transcription factor INDEHISCENT under the control of the 35S promoter after treatment with auxin
transcription profiling by array
Arabidopsis thaliana
12
05/07/2017
104
-
Transcriptome profiling after CBX7 knockdown in LNCaP cells
transcription profiling by array
Homo sapiens
12
05/07/2017
-
136
-
Long non-coding RNA expression profiling of human T cells in hepatocellular carcinoma
transcription profiling by array
Homo sapiens
9
05/07/2017
-
147
-
Transcriptome analysis in the Antarctic bacterium Pseudomonas extremaustralis at low temperatures
RNA-seq of coding RNA
Pseudomonas extremaustralis 14-3 substr. 14-3b
4
05/07/2017
-
ENA
66
-
Differences of gut mucosa gene expression between septic very low birth weight infants and their non-septic twins
transcription profiling by array
Homo sapiens
10
05/07/2017
-
121
-
Transcription profiling by array of E. faecalis V583 LexA- and wild type to investigate constitutive SOS response
transcription profiling by array
Enterococcus faecalis
2
05/07/2017
62
-
Transcription profiling of human breast cancer and scarcoma tissue and adjacent tissue to investigate alterantive splicing
transcription profiling by array
Homo sapiens
40
05/07/2017
267
-
Transcriptional differences between the peripheral and the transcription zone of the prostate
RNA-seq of coding RNA
Homo sapiens
18
04/07/2017
-
ENA
220
-
RNA-seq analysis of 2 cell line models of lung disease (A549 and BEAS-2B) and primary bronchial epithelial cells in Project 3 of Open Targets 020 - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
7
04/07/2017
-
ENA
501
Transcription profiling by array of human extrahepatic cholangiocyte organoids, freshly isolated common bile duct cholangiocytes and embryonic stem cells
transcription profiling by array
Homo sapiens
15
04/07/2017
133
-
Analysis of transcriptomes from 21 tissues, 13 melanoma samples and 7 breast cancer cell lines, enriched for transcripts from haploblocks with intronic and intergenic GWAS SNPs
RNA-seq of coding RNA
Homo sapiens
41
04/07/2017
-
ENA
520
-
Transcription profiling by array of the differences between matched male and female breast cancer
transcription profiling by array
Homo sapiens
25
04/07/2017
-
197
-
Sphingobium Nickel resistance analysis by RNA-seq approach
RNA-seq of coding RNA
Sphingobium sp. ba1
6
03/07/2017
ENA
63
-
Gene expression between dry and imbibed seeds in vitamin C defective (vtc) mutants and wild-type Arabidopsis thaliana
RNA-seq of coding RNA
Arabidopsis thaliana
18
03/07/2017
ENA
70
-
Time of day determines Arabidopsis transcriptome and growth dynamics under mild drought
RNA-seq of coding RNA
Arabidopsis thaliana
21
03/07/2017
ENA
93
-
Transcription profiling by array of South Australian bread wheat under salt stress
transcription profiling by array
Triticum aestivum
84
02/07/2017
-
169
-
Transcription profiling by array of human hematopoietic stem cell isolated from multiple sclerosis patients and healthy controls
transcription profiling by array
Homo sapiens
8
02/07/2017
-
117
-
RNA-seq of Japonica rice with overexpression or knockdown of OsMPH1 gene, which is involved in regulation of plant height --- a major trait affecting yield potential
RNA-seq of coding RNA
Oryza sativa Japonica Group
9
01/07/2017
-
ENA
67
-
RNA-seq of Brachypodium distachyon culms from control and BdBAHD01 RNAi plants
RNA-seq of coding RNA
Brachypodium distachyon
12
01/07/2017
-
ENA
67
-
RNA-seq of Setaria viridis culms from control and SvBAHD01 RNAi plants
RNA-seq of coding RNA
Setaria viridis
9
01/07/2017
-
ENA
66
-
Gene expression analysis of lung cancer samples and healthy controls
transcription profiling by array
Homo sapiens
40
01/07/2017
-
411
-
Transcriptome profiling of human anaplastic meningioma IOMM-Lee cells following silencing of HuR (Human antigen R) gene expression by siRNA
transcription profiling by array
Homo sapiens
12
01/07/2017
-
57
-
Small RNA and total RNA sequencing of C. elegans with mutations in the hrde-1 and emb-4 genes
RNA-seq of non coding RNA
Caenorhabditis elegans
40
01/07/2017
-
ENA
107
-
Transcription profiling by high throughput sequencing of murine small intestinal epithelial cells stimulated with interleukin-28A
RNA-seq of coding RNA
Mus musculus
8
01/07/2017
-
ENA
136
-
Transcription profiling by array of human osteosarcoma cell line U2OS treated with ZM447439 (an aurora kinase inhibitor) or SB202190 (a p38 inhibitor)
transcription profiling by array
Homo_sapiens
4
01/07/2017
123
-
Time-course of bone marrow macrophages infected with Listeria monocytogenes in the presence or absence of IFNgamma
transcription profiling by array
Mus musculus
40
30/06/2017
-
123
-
Comparative microarrays of Actinoplanes sp. SE50/110 ΔacrA with the Actinoplanes sp. SE50/110 wildtype
transcription profiling by array
Actinoplanes sp. SE50/110
4
30/06/2017
-
60
-
RNAseq analysis of CD4 and CD8 T cells in response to vaccinia virus infection
RNA-seq of coding RNA
Mus musculus
12
30/06/2017
ENA
101
-
Transcriptional profiling of human breast tumor samples before and after treatment with chemotherapy with and without bevacizumab
transcription profiling by array
Homo sapiens
358
30/06/2017
432
-
Transcription profiling of human multiple myeloma cells after knockdown of EphA3
transcription profiling by array
Homo sapiens
4
30/06/2017
417
-
Transcription profiling by array of MCF7 cell lines silenced with TRAP1 small interfering RNA compared with scrambled RNA control
transcription profiling by array
Homo sapiens
6
30/06/2017
129
-
Expression profile of microRNAs in human follicular lymphoma (FL), reactive lymph nodes (rLN) and pure T cells
microRNA profiling by array
Homo sapiens
42
29/06/2017
-
195
-
ChIP-Seq of Gabpa in male C57Bl/6 mice liver
ChIP-seq
Mus musculus
5
29/06/2017
-
ENA
77
-
Histone H3K9me3 ChIP-seq of young adult C. elegans wildtype, and mutants emb-4 (qm31) and hrde-1 (tm1200)
ChIP-seq
Caenorhabditis elegans
20
29/06/2017
-
ENA
67
-
RNA-seq of wild-type Salmonella Typhimurium SL1344 and its AcrB D408A mutant
RNA-seq of coding RNA
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
6
29/06/2017
ENA
69
-
Analysis of post-transcriptional RNA modifications in Caenorhabditis elegans under stress
RNA-seq of non coding RNA
Caenorhabditis elegans
9
29/06/2017
-
ENA
64
-
Acquired TET2 mutation-linked clonal hematopoiesis in FPD/AML patient led to the development of pre-leukemic clone resulting independently in T2-ALL and AML-M0
comparative genomic hybridization by array
Homo sapiens
2
29/06/2017
-
109
-
Transcriptome profiling of glioblastoma tissues and peritumoral regions by Serial Analysis of Gene Expression
transcription profiling by SAGE
Homo sapiens
27
29/06/2017
-
ENA
195
-
Finding new Chimeric RNAs in RNA-seq data, a test study in Acute Myeloid Leukemia patient cells
RNA-seq of coding RNA
Homo sapiens
3
28/06/2017
-
ENA
193
-
Transcription profiling by array of left ventricular papillary muscles from rats with diabetic cardiomyopathy and healthy controls treated with atorvastatin or vehicle control for 15 days
transcription profiling by array
Rattus norvegicus
12
27/06/2017
-
69
-
Transcription changes at sub-optimal root temperature in different grafting combinations of tomato rootstocks and scions
transcription profiling by array
Solanum habrochaites, Solanum lycopersicum
24
27/06/2017
-
67
-
Methylome profiling of human glioblastoma using Illumina 450K microarrays for the GlioTeX panel
methylation profiling by array
Homo sapiens
10
24/06/2017
-
157
-
Transcription profiling by array of mouse primary myoblasts constitutively expressing Hippo pathway downstream effectors Yap or Taz against empty vector controls
transcription profiling by array
Mus musculus
18
20/06/2017
118
-
Transcription profiling by array of Bacillus amyloliquefaciens FZB42 wildtype and sigD- mutants grown in media supplemented with soil extract
transcription profiling by array
Bacillus amyloliquefaciens
6
20/06/2017
81
-
Microarray analysis of abiotic stress responses in Arabidopsis thaliana rosette leaf tissue of Col-0 wild type plants and double/triple knockout mutants of aquaporins (pip2;1 pip2;2 and pip2;1 pip2;2 pip2;4)
transcription profiling by array
Arabidopsis thaliana
135
20/06/2017
234
-
Transcriptional profiling by array of chronic myeloid leukaemia (CML) stem/progenitor cells (CD34+38-) treated with tyrosine kinase inhibitors (imatinib, dasatinib and nilotinib) at different time points (8 hours and 7 days) against untreated controls
transcription profiling by array
Homo sapiens
49
20/06/2017
-
248
-
Transcriptional profiling of the developmental gene whiH deletion mutant of Streptomyces venezuelae ATCC 10712 at 7 time points from 8 to 20 hours of growth
transcription profiling by array
Streptomyces venezuelae
42
19/06/2017
122
-
RNA-seq of Hutchinson-Gilford progeria syndrome cells treated with proteasome inhibitor MG132
RNA-seq of coding RNA
Homo sapiens
2
18/06/2017
-
ENA
148
-
AtPRMT5 regulates shoot regeneration through modulating multiple genes expression analyzed by RNA-seq
RNA-seq of coding RNA
Arabidopsis thaliana
6
18/06/2017
ENA
90
-
Genes induced by HERV-K virus retroviral envelop
transcription profiling by array
Homo sapiens
8
17/06/2017
-
96
-
Expression array of RKO colorectal cancer cells resistant to irinotecan (CPT-11)
transcription profiling by array
Homo sapiens
3
17/06/2017
-
158
-
Microarray transcription analysis of MDS/MPN leukocyte samples with and without EZH2 mutations (n = 12, each) and EZH2-downregulated F-36P, MOLM-13 and OCI-M2 cell lines, using 2 shRNAs targeting EZH2 and a non-targeting control shRNA, each
transcription profiling by array
Homo sapiens
60
15/06/2017
-
251
-
Dynamic regulation of VEGF-inducible genes by an ERK-ERG-p300 transcriptional network
transcription profiling by array
Homo sapiens
14
15/06/2017
-
89
-
ChIP-seq of ERG-bound regulatory elements in human and bovine vascular endothelial cells
ChIP-seq
Bos taurus, Homo sapiens
10
15/06/2017
-
ENA
138
-
Elevated growth temperature in procyclic form of Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
6
15/06/2017
-
ENA
52
-
RNA-seq of in vitro-generated murine T helper 17 cells
RNA-seq of coding RNA
Mus musculus
8
14/06/2017
ENA
93
-
Transcription profiling by array of 4T1 murine breast carcinoma cells and derived cell lines resistant to photodynamic therapy induced by novel porphyrin-based photosensitizers and temoporfin
transcription profiling by array
Mus musculus
13
14/06/2017
-
132
-
RNA-seq of ppp1r13l knockdown in neonatal mice cardiomyocytes and lipopolysaccharide stimulation kinetics transcriptome
RNA-seq of coding RNA
Mus musculus
12
13/06/2017
ENA
114
-
RNA-seq of BALB/cJ‐Ppp1r13lwa3/J (wa3) mouse hearts vs BALB/C wildtype mice aged 7 weeks and 12 weeks mice, as well as lipopolysaccharide treatment for 12-week-old mice
RNA-seq of coding RNA
Mus musculus
12
13/06/2017
-
ENA
86
-
Mutations in ACTRT1 and its transcribed non-coding elements lead to aberrant activation of the Hedgehog signaling pathway in inherited and sporadic basal cell carcinomas
transcription profiling by array
Homo sapiens
5
12/06/2017
-
182
-
p63 spatio-temporal control of cleft palate
transcription profiling by array
Mus musculus
8
12/06/2017
88
-
Transcription profiling by RNA-Seq mouse embryos
RNA-seq of coding RNA
Mus musculus
5
12/06/2017
ENA
133
-
Microarray analysis of palatal shelves from wild-type versus p63-null mouse embryos
transcription profiling by array
Mus musculus
6
12/06/2017
95
-
Transcription profiling by array of neonatal and children dermal fibroblasts isolated from cleft lip and adult dermal fibroblasts of breast and face
transcription profiling by array
Homo sapiens
93
11/06/2017
283
-
Transcription profiling by array of reproductive tissues from female Cynomolgus macaques ( Macaca fascicularis ) after systemic vaccination with a modified vaccinia virus Ankara (MVA)-HIVB
transcription profiling by array
Macaca fascicularis
18
09/06/2017
-
78
-
Transcriptome Analysis of Preinvasive and Invasive Early Squamous Carcinoma in Archival Laser Microdissected Samples
transcription profiling by array
Homo sapiens
60
09/06/2017
241
-
ChIP-seq data of Jun target genes and the control in zebrafish embryos
ChIP-seq
Danio rerio
8
08/06/2017
-
ENA
93
-
Global expression profiling time series of early human embryonic stem cell differentiation towards the mesoderm lineage
transcription profiling by array
Homo sapiens
33
08/06/2017
-
185
-
Transcriptome analysis of self-renewing human pancreatic progenitors derived from pluripotent stem cells
RNA-seq of coding RNA
Homo sapiens
9
06/06/2017
-
ENA
159
-
RNA-seq of Medicago truncatula A17 and the ethylene insensitive sickle mutant interacting with the fungal root pathogen, Rhizoctonia solani AG8
RNA-seq of coding RNA
Medicago truncatula
24
06/06/2017
ENA
103
-
EPO-regulated targets in E1, E2, and E3 erythroid progenitors
transcription profiling by array
Mus musculus
20
06/06/2017
105
-
miRNA expression profiles in fresh frozen and formalin-fixed paraffin embedded tonsillar tumors
transcription profiling by RT-PCR
Homo sapiens
30
06/06/2017
-
184
-
RNA-seq of high lipid producing Yarrowia lipolytica during nitrogen or carbon restriction (control strain)
RNA-seq of coding RNA
Yarrowia lipolytica
6
06/06/2017
-
ENA
88
-
Identifying crossover locations in Arabidopsis thaliana CMT3-11 (Col) x CMT3-7 (Ler) F2 and wild type Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
555
05/06/2017
-
ENA
216
-
Nucleosome-depleted DNA transposons act as enhancers of meiotic recombination at Arabidopsis genes (RNA-seq)
RNA-seq of coding RNA
Arabidopsis thaliana
2
05/06/2017
-
ENA
72
-
Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (H3K4m3 ChIP-seq)
ChIP-seq
Arabidopsis thaliana
9
05/06/2017
-
ENA
76
-
Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (MNase-seq)
MNase-seq
Arabidopsis thaliana
3
05/06/2017
-
ENA
86
-
Meiotic recombination initiation hotspots in Arabidopsis genes and transposons (SPO11-1-oligonucleotides-seq)
DNA-seq
Arabidopsis thaliana
10
05/06/2017
-
ENA
89
-
Transcription profiling of dermal fibroblasts subjected to different fluid flow rates
transcription profiling by array
Homo sapiens
9
05/06/2017
-
104
-
Tissue and developmental atlas of Brachypodium distachyon
transcription profiling by array
Brachypodium distachyon
117
03/06/2017
-
125
-
Genome-wide gene expression analysis of MDA-MB-468 human breast cancer cells treated with PLA2G7 shRNA
transcription profiling by array
Homo sapiens
6
02/06/2017
-
166
-
Genome-wide gene expression analysis of MDA-MB-468 human breast cancer cells treated with PLA2G7 siRNA
transcription profiling by array
Homo sapiens
4
02/06/2017
-
134
-
Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling
translation profiling, RNA-seq of coding RNA
Mus musculus
20
02/06/2017
-
ENA
124
-
Analysis of undifferentiated hiPSC and differentiation into intermediate mesoderm of cells from patients carrying a heterozygous mutation in the SAMD9 gene
transcription profiling by array
Homo sapiens
10
02/06/2017
-
93
-
Genome-wide analysis of somatic copy number alterations and chromosomal breakages in osteosarcoma
genotyping by array
Homo sapiens
160
02/06/2017
-
330
-
Transcription profiling by high throughput sequencing of pancreatic beta cells from wild type and Abcc8 knockout mice
RNA-seq of coding RNA
Mus musculus
8
02/06/2017
-
ENA
110
-
ATAC-seq on endocardial cells from E12.5 mouse hearts in Tbx20 knockouts and wild type counterparts
ATAC-seq
Mus musculus
4
02/06/2017
ENA
288
-
Deciphering the relationship between polycomb repression and stochastic gene expression from single-cell RNA-seq data
RNA-seq of coding RNA from single cells
Mus musculus
288
01/06/2017
-
ENA
206
-
Microarray analysis of leaves of Arabidopsis thaliana Col-0 plants exposed to volatile pinenes (treatment) or hexane (control)
transcription profiling by array
Arabidopsis thaliana
8
01/06/2017
90
-
Effect of elevated c-di-GMP in Sinorhizobium meliloti
transcription profiling by array
Sinorhizobium meliloti
4
01/06/2017
60
-
Fip1 iCLIP-seq in Hela cells without treatment or treated with negative control anti-sense oligos (ASO) or snoRD50a ASO to study how snoRD50a affects Fip1/RNA interaction in mRNA 3' processing
CLIP-seq
Homo sapiens
6
01/06/2017
-
ENA
65
-
RNA-biotin based pull down assay with polyA site (PAS) RNA substrates in Hela Nuclear Extract followed by RNA-seq to discover trans-acting RNA molecules involved in mRNA 3 processing
RIP-seq
Homo sapiens
4
01/06/2017
-
ENA
64
-
The epigenetic modifier Fam208a is required to maintain epiblast cell potency
transcription profiling by array
Mus musculus
12
01/06/2017
-
144
-
PBMCs from stage IV melanoma patients after vaccination with melanoma-targeted mature dendritic cells (mDCs)
transcription profiling by array
Homo sapiens
142
01/06/2017
249
-
Comparing effects of inhibition of activin receptor type IIB (ActRIIB), myostatin (GDF8) and/or activinA in mouse muscle
RNA-seq of coding RNA
Mus musculus
34
01/06/2017
ENA
121
-
Lipidomic and Metabolic Changes in the P4-type ATPase ATP10D deficient C57BL/6J Wild Type Mice upon Rescue of ATP10D Function
transcription profiling by array
Mus musculus
8
01/06/2017
-
64
-
Transcriptomic responses of three-spined stickleback (Gasterosteus aculeatus) from Aire and Siblyback populations to ethinyl-estradiol, copper and binary mixtures
transcription profiling by array
Gasterosteus aculeatus
120
01/06/2017
-
95
-
Transcriptomic profiles of the acetogen Clostridium ljungdahlii during lithoautotrophic growth with syngas or with H2 and CO2 compared to organoheterotrophic growth with fructose
transcription profiling by array
Clostridium ljungdahlii
12
01/06/2017
77
-
RNA-seq of RNA endocleavage sites after siRNA knock-down of XRN1 or SMG
RNA-seq of coding RNA
Homo sapiens
3
01/06/2017
-
ENA
77
-
RNA-seq of human foetal foreskin fibroblasts 2 (HFFF2) treated with 2ng/ml TGF-beta-1 to induce myofibroblast differentiation or 10Gy gamma irradiation to induce senescence
RNA-seq of coding RNA
Homo sapiens
9
01/06/2017
-
ENA
174
-
Gene Expression Patterns in Potato Roots Associated with Greater Plant Growth at Low Phosphate Concentrations in the Rhizosphere
transcription profiling by array
Solanum tuberosum
24
01/06/2017
-
66
-
MicroRNA analysis during serum starvation of primary Human Foreskin Fibroblast cells
microRNA profiling by array
Homo sapiens
4
01/06/2017
86
-
Transcription profiling by array of human MDA-MB231-luc2 cells treated with TGFbeta2 and ST247
transcription profiling by array
Homo_sapiens
4
01/06/2017
61
-
Transcription profiling of pancreata from Ptf1a-Cre;LSL-KrasG12D and Ptf1a-Cre;LSL-KrasG12D;RelAfl/fl mice
transcription profiling by array
Mus musculus
6
01/06/2017
95
-
Gene expression profiling of liver from C57BLKS/J and db/db 8 mice with an AAV harboring a control or GAbpa-specific miRNA under the LP1 promoter
transcription profiling by array
Mus musculus
24
31/05/2017
-
95
An oil containing EPA and DHA from transgenic Camelina sativa to replace marine fish oil in feeds for Atlantic salmon (Salmo salar L.)
transcription profiling by array
Salmo salar
36
31/05/2017
-
100
-
Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data
RNA-seq of coding RNA from single cells
Mus musculus
384
31/05/2017
ENA
142
-
Microarray examination of liver tissue from mice fed 58% saturated high fat diet to induce hepatic steatosis
transcription profiling by array
Mus musculus
12
31/05/2017
-
79
-
polyA site sequencing (PAS-seq) analysis of Hela cells treated with NC ASO or snoRD50a ASOs
RNA-seq of coding RNA
Homo sapiens
6
31/05/2017
-
ENA
71
-
RNA-seq of human cell line HeLa after depletion of a lncRNA with three different loss-of-function methods
RNA-seq of coding RNA
Homo sapiens
768
31/05/2017
ENA
184
-
Multiomics of tomato glandular trichomes reveals distinct features of central carbon metabolism supporting high productivity of specialized metabolites
transcription profiling by array
Solanum habrochaites, Solanum lycopersicum
12
31/05/2017
74
-
Cymodocea nodosa response to simulated CO2-driven ocean acidification
RNA-seq of coding RNA
Cymodocea nodosa
9
31/05/2017
ENA
56
-
Transcriptome profiling of contrasting rice genotypes in response to submergence during seed germination
RNA-seq of coding RNA
Oryza sativa
12
31/05/2017
-
ENA
150
-
Gene expression profiling in control, heat-shock, and recovery treatment in a RIL population of Caenorhabditis elegans L4 larvae
transcription profiling by array
Caenorhabditis elegans
84
30/05/2017
-
197
-
Transcriptome analysis of neuromuscular junction during degeneration and regeneration of axon terminal
RNA-seq of coding RNA
Mus musculus
12
30/05/2017
-
ENA
122
-
Transcription profiling by array of eight pairs of closely related strains using pair-wise two-colour microarray analysis
transcription profiling by array
Schizosaccharomyces pombe
8
30/05/2017
-
93
-
Transcriptomic response of tomato (Solanum lycopersicum) plants to ammonium toxicity at elevated CO2 conditions
transcription profiling by array
Solanum lycopersicum
12
29/05/2017
96
-
Transcriptional profiling by array of uropathogenic Escherichia coli (UPEC) strain grown in urine/Luria bertani medium culture in vitro as well as during three distinct phases of UPEC bladder infection
transcription profiling by array
Escherichia coli UTI89
15
28/05/2017
-
75
-
Microarray comparing maternal peripheral blood effector T cells to decidual effector T cells
transcription profiling by array
Homo sapiens
24
26/05/2017
-
136
-
Insights into the prevalence and underlying causes of clonal variation through transcriptomic analysis in Pichia pastoris
transcription profiling by array
Komagataella pastoris
30
26/05/2017
-
96
-
RNA-seq of E10.5 limb mesenchymal cells from mice with mutations in Mycn and mir17-92
RNA-seq of coding RNA
Mus musculus
12
24/05/2017
-
ENA
109
Physcomitrella patens Reute development
transcription profiling by array
Physcomitrella patens
10
24/05/2017
-
93
-
Maternal folate depletion during early development and high fat feeding from weaning elicit similar changes in gene expression, but not in DNA methylation, in adult offspring (DNA methylation data)
methylation profiling by array
Mus musculus
48
22/05/2017
96
-
Maternal folate depletion during early development and high fat feeding from weaning elicit similar changes in gene expression, but not in DNA methylation, in adult offspring (Gene expression data)
transcription profiling by array
Mus musculus
24
22/05/2017
65
-
Identification of ETO2-GLIS2 targets by ChIP-sequencing
ChIP-seq
Homo sapiens
27
22/05/2017
-
ENA
194
-
Temporal Transcriptional Profiling in response to cMYC and Her2/NEU Expression and Inactivation in In Vitro Cultured Primary Mammary Epithelial Cells of Adult Virgin Mice
transcription profiling by array
Mus musculus
9
22/05/2017
-
154
-
Temporal Transcriptional Profiling in response to cMYC and KrasG12D Expression and Inactivation in In Vitro Cultured Primary Mammary Epithelial Cells of Adult Virgin Mice
transcription profiling by array
Mus musculus
9
22/05/2017
-
173
-
RNAseq of Volvox carteri somatic cells and mature reproductive cells
RNA-seq of coding RNA
Volvox carteri
6
21/05/2017
-
ENA
101
-
Transcriptomes and differential gene expression at the Arabidopsis shoot meristem during flowering
RNA-seq of coding RNA
Arabidopsis thaliana
16
21/05/2017
-
ENA
305
Chromatin states in the Arabidopsis shoot apical meristem
ChIP-seq
Arabidopsis thaliana
24
21/05/2017
-
ENA
142
-
Chromatin states in the Arabidopsis seedlings
ChIP-seq
Arabidopsis thaliana
6
21/05/2017
-
ENA
243
-
RNA Seq of hematopoietic stem and progenitor cells
RNA-seq of coding RNA
Mus musculus
9
18/05/2017
ENA
211
-
The Global Molecular Landscape of dormant Hematopoietic Stem Cells
RNA-seq of coding RNA from single cells
Mus musculus
384
18/05/2017
ENA
252
-
Time-Resolved Proteomics Extends Ribosome Profiling-Based Measurements of Protein Synthesis Dynamics
other, RNA-seq of coding RNA
Homo sapiens
12
18/05/2017
-
-
167
-
Time series of gene expression profiles describing the temporal response to prolonged heat stress in C. elegans
transcription profiling by array
Caenorhabditis elegans
36
17/05/2017
128
-
Transcription profiling of Physcomitrella patens reproductive organs from wt and Ppglr1/2 knock out samples
transcription profiling by array
Physcomitrella patens
6
17/05/2017
114
-
YAP regulates cell mechanics by controlling focal adhesion assembly
ChIP-seq
Homo sapiens
5
17/05/2017
-
ENA
116
-
The Rhizoctonia solani transcriptome during interaction with the host plant Lactuca sativa
RNA-seq of coding RNA
Rhizoctonia solani
36
17/05/2017
-
ENA
125
-
INTS8 mutations cause severe neurodevelopmental syndrome
RNA-seq of coding RNA
Homo sapiens
4
17/05/2017
ENA
90
-
Analysis of paired primary and metastatic cell lines identifies common DNA methylation changes in melanoma metastasis
methylation profiling by high throughput sequencing
Homo sapiens
7
17/05/2017
-
149
-
Gene expression profiling in Abatacept treated Rheumatoid Arthritis patients according to response
transcription profiling by array
Homo sapiens
36
17/05/2017
247
-
Gene expression profiles of TIE2 expressing Monocytes (TEMs)
transcription profiling by array
Homo sapiens
6
17/05/2017
78
-
DNA microarray analysis using murine cerebellum at P6
transcription profiling by array
Mus musculus
2
16/05/2017
110
-
RNA-seq of a panel of non-melanoma skin cancer lesions
RNA-seq of coding RNA
Homo sapiens
29
16/05/2017
-
ENA
552
Microarray for transcript expression comparison of normal and Sox18 dominant negative dermal spheres
transcription profiling by array
Mus musculus
6
16/05/2017
-
113
-
Immune response eQTL study in primary human monocytes stimulated with multiple microbial ligands under multiple time points
transcription profiling by array
Homo sapiens
938
16/05/2017
-
396
-
RNA-SEQ assay for wild type and CRISPR induced endoglin knockout human pulmonary artery smooth muscle cells (PASMC)
RNA-seq of coding RNA
Homo sapiens
6
16/05/2017
-
ENA
78
-
Gata6 network regulates epidermal junctional zone cell fate
ChIP-seq, transcription profiling by array
Mus musculus
31
16/05/2017
128
-
Genome-wide maps of Gata6 in primary mouse keratinocytes
ChIP-seq
Mus musculus
4
16/05/2017
-
-
69
-
Gene expression signature of Gata6 positive epidermal cells
transcription profiling by array
Mus musculus
12
16/05/2017
75
-
Gene expression signature of the three major epidermal differentiation compartments: interfollicular epidermis (IFE), hair follicle (HF) and sebaceous gland (SG)
transcription profiling by array
Mus musculus
9
16/05/2017
89
-
Epidermal overexpression of ∆NLef1 leads to deregulation of epidermal stem cell fate
transcription profiling by array
Mus musculus
6
16/05/2017
73
-
Comparative gene expression profiling of serum-free and FBS treated adherent primary pancreatic TIC cultures
transcription profiling by array
Homo sapiens
16
16/05/2017
-
69
-
Epigenetic regulation and transcriptional repression by Tet1 in the early post-implantation mouse embryo: WG Bisulfite sequencing
Bisulfite-seq
Mus musculus
8
15/05/2017
ENA
123
-
Epigenetic regulation and transcriptional repression by Tet1 in the early post-implantation mouse embryo: ChIP seq
ChIP-seq
Mus musculus
12
15/05/2017
-
ENA
264
-
Transcription profiling of HEK293 cells expressing YAP1, RASSF1A or both to study the effect of RASSF1A on YAP signalling in the HIPPO pathway
transcription profiling by array
Homo sapiens
4
15/05/2017
-
113
-
Expression RNA-Seq data of matched cases of pre-treatment Fine-needle aspiration (FNA) and the respective post neo-adjuvant treatment operative sample of breast cancer patients
RNA-seq of coding RNA
Homo sapiens
14
15/05/2017
ENA
336
-
Epigenetic regulation and transcriptional repression by Tet1 in the early post-implantation mouse embryo: Methylation data
methylation profiling by high throughput sequencing
Mus musculus
44
15/05/2017
-
ENA
148
-
Lineage-specific functions of TET1 in the post-implantation mouse embryo.: RNA-Seq of in vitro converted primed epiblast-like cells
RNA-seq of coding RNA
Mus musculus
15
15/05/2017
-
ENA
184
-
Comparative genomic hybridization by array of 51 Diffuse Large B-cell Lymphomas against a common pool of reference DNA from healthy individuals to identify recurrent copy number events in this disease
comparative genomic hybridization by array
Homo sapiens
51
15/05/2017
256
-
Comparative genomic hybridization by array of 18 treatment-refractory Diffuse Large B-cell Lymphomas against a common reference pool of DNA from healthy individuals to identify copy number events that could predict the relapse
comparative genomic hybridization by array
Homo sapiens
18
15/05/2017
208
-
Comparative genomic hybridization by array of 38 Diffuse Large B-Cell lymphomas against matched blood samples to identify recurrent copy number events
comparative genomic hybridization by array
Homo sapiens
38
15/05/2017
234
-
RNA-seq transcriptional profiling in human primary fetal and adult CD34+ hematopoietic stem/progenitor cells (HSPCs) erythroid progenitor cells (ProEs)
RNA-seq of coding RNA
Homo sapiens
16
15/05/2017
-
ENA
105
-
Lineage-specific functions of TET1 in the post-implantation mouse embryo
RNA-seq of coding RNA
Mus musculus
23
15/05/2017
-
ENA
99
-
Adipocyte-derived Exosomal miRNAs from Subcutaneous Adipose Tissue: A Novel Mechanism for Obesity-Related Disease
transcription profiling by array
Homo sapiens
12
15/05/2017
74
-
Fgf18 regulates hair cycle
transcription profiling by array
Mus musculus
4
15/05/2017
67
-
FGF18 affects hair cycle
transcription profiling by array
Mus musculus
2
15/05/2017
60
-
Transcription profiling by RNA-seq of Arabidopsis treated with the Strobilurin kresoxim-methyl to study the effect on leaf growth
RNA-seq of coding RNA
Arabidopsis thaliana
6
13/05/2017
-
ENA
118
-
Genome-wide identification of bZIP29 target genes in Arabidopsis cell cultures
ChIP-seq
Arabidopsis thaliana
3
13/05/2017
ENA
180
-
Skeletal muscle gene expression in the wild type and the GAA knock-out mice, a model of Pompe disease
RNA-seq of coding RNA
Mus musculus
9
13/05/2017
-
-
61
-
Bacterial endosymbionts control host sexuality and reveal reproductive genes of early divergent fungi
RNA-seq of coding RNA
Rhizopus microsporus
12
13/05/2017
-
-
47
-
The male determining M-factor of the global disease vector Musca domestica is a paralog of the generic splice factor CWC22
RNA-seq of coding RNA
Musca domestica
4
12/05/2017
-
ENA
137
-
Expression Profiling of Term Placenta in Viviparous Mammals by RNA-Seq
RNA-seq of coding RNA
Ateles fusciceps, Bos taurus, Canis lupus familiaris, Dasypus novemcinctus, Loxodonta africana, Monodelphis domestica, Mus musculus, Pan paniscus
8
12/05/2017
ENA
78
-
Expression profiling in cellular miRNAs of human bone marrow stromal cells
other
Homo sapiens
6
12/05/2017
-
110
-