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AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
RNAseq of old and young Macrotermes bellicosus (Blattodea, Isoptera) individuals
RNA-seq of coding RNA
Macrotermes bellicosus
36
Today
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ENA
-
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Ampliseq transcriptomic array of REF seq. genes in Snai1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
Yesterday
-
ENA
3
-
Ampliseq transcriptomic array of REF seq. genes in ZEB1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
Yesterday
-
ENA
-
-
ChIP-sequencing of Snai1 transcription factor in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
Yesterday
-
ENA
-
-
ChIP-sequencing of ZEB1 in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
Yesterday
-
ENA
3
-
Transcription profiling of human primary bone cells exposed to Staphylococcus aureus
transcription profiling by array
Homo sapiens
6
24/04/2018
-
-
-
Jak kinase inhibition in mouse adipocyte progenitors
transcription profiling by array
Mus musculus
12
24/04/2018
-
-
-
Microarray of ZEB1 Loss-of-Function in NCH421K cells
transcription profiling by array
Homo sapiens
6
24/04/2018
1
-
ChIP-seq for Zeb1 in Human Neural Stem Cells and Glioblastoma Cancer Stem-like Cells
ChIP-seq
Homo sapiens
2
24/04/2018
ENA
-
-
Transcription profiling by array to investigate gene expression changes caused by TNF-alpha induced fusion of human M13SV1-Cre breast epithelial cells and MDA-MB-435-pFDR1 breast cancer cells during normoxia and hypoxia
transcription profiling by array
Homo sapiens
8
23/04/2018
-
-
-
Transcriptional Profiling of Synovium in a Porcine Model of Early Post-traumatic Osteoarthritis
RNA-seq of coding RNA
Sus scrofa
42
21/04/2018
-
ENA
28
-
Biochemical Efficacy and Safety Trial of Vitamin D: dose-finding, placebo-controlled, randomised clinical trial assessing effects of high dose vitamin D
transcription profiling by array
Homo sapiens
574
21/04/2018
20
-
RNA sequencing of chicken limb distal mesenchyme cells to compare gene expression over time and in heterochronic grafted cells
RNA-seq of coding RNA
Gallus gallus
12
20/04/2018
ENA
37
-
Single cell RNA-seq of isolated human foetal L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA from single cells
Homo sapiens
295
20/04/2018
-
ENA
27
-
RNA-seq of isolated human foetal and hiPSC L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA
Homo sapiens
95
20/04/2018
-
ENA
33
-
Morphine treatment leads to temporal modulation of the gut microbiome
DNA-seq
mouse gut metagenome
64
16/04/2018
-
ENA
42
-
Morphine treatment induces distinct changes in the gut microbiome at day 3 post treatment
DNA-seq
mouse gut metagenome
16
16/04/2018
-
ENA
26
-
Microarray analysis of human pediatric omental biopsies obtained from uremic patients, patients on peritoneal dialysis or healthy controls
transcription profiling by array
Homo sapiens
19
12/04/2018
-
56
-
Genome-wide profiling of H3K27ac (ChIP-seq) in IMR90 cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
49
-
Genome-wide profiling of CTCF binding (ChIP-seq) in A549 and U2OS cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
44
-
Circularized chromosome conformation capture (4C-seq) in A549 and U2OS cells stably expressing rat GR
4C
Homo sapiens
4
12/04/2018
ENA
39
-
RNA Sequencing of Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
24
11/04/2018
ENA
85
-
Laser Capture Microdissection and RNA Sequencing Human Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
8
11/04/2018
ENA
63
-
IL-17A treatment of mouse primary colonic epithelial spheroids in 3 differentiation states
transcription profiling by array
Mus musculus
24
10/04/2018
-
46
-
Rat-CHTP1.2-Experiment
transcription profiling by array
Rattus norvegicus
79
10/04/2018
35
-
Systems toxicology assessment of CHTP1.2 [Lung Data]
transcription profiling by array
Rattus norvegicus
70
10/04/2018
35
-
Systems toxicology assessment of CHTP1.2 [Liver Data]
transcription profiling by array
Rattus norvegicus
83
10/04/2018
36
-
Changes in nitrogen availability lead to a reprogramming of pyruvate metabolism
transcription profiling by array
Hordeum vulgare
15
09/04/2018
-
-
RNA-seq of Streptomyces coelicolor and Streptomyces davawensis including a dodecin gene deletion variant in response to plumbagin treatment
RNA-seq of coding RNA
Streptomyces coelicolor A3(2), Streptomyces davaonensis JCM 4913
12
07/04/2018
-
ENA
52
-
RNA-seq to investigate how human-specific Notch2 paralogs expand cortical neurogenesis through regulation of Delta/Notch interactions
RNA-seq of coding RNA
Homo sapiens
11
06/04/2018
EGA
72
-
Transcription profiling by array of mouse primary hepatocytes from wild type and Xpa-/-p53+/- strains treated with carcinogens
transcription profiling by array
Mus musculus
114
06/04/2018
94
-
Transcriptome analysis of Huntington disease and control cerebral organoids at day 45 and 105 of differentiation
transcription profiling by array
Homo sapiens
15
05/04/2018
-
57
-
Single-molecule sequencing of maize and sorghum developmental tissues
RNA-seq of coding RNA
Sorghum bicolor, Zea mays
16
05/04/2018
-
ENA
35
-
RNA-sequencing of Sorghum tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Sorghum bicolor
165
05/04/2018
-
ENA
36
-
RNA-sequencing of maize tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Zea mays
36
05/04/2018
-
ENA
27
-
Microarrays of SK-N-AS cells at 37 and 40 degrees C treated with TNFalpha
transcription profiling by array
Homo sapiens
48
05/04/2018
64
-
Whole transcriptome assay of human urinary bladder cancer tumor samples from the central part and invasive front of individual tumors
transcription profiling by array
Homo sapiens
16
04/04/2018
-
90
-
Transcription profiling by microarray of A549 cells and Ext1 knock out or wild type mouse embryonic fibroblast cells co-cultured as spheroids
transcription profiling by array
Homo sapiens
12
04/04/2018
-
59
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature (microarray data set 2)
transcription profiling by array
Solanum tuberosum
12
04/04/2018
-
31
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature
transcription profiling by array
Solanum tuberosum
24
04/04/2018
-
29
-
RNA-seq of PCGF5 knockout and PCGF3/5 double knockout mouse embryonics stem cells bearing doxycycline-inducible Xist transgene on chromosome 16
RNA-seq of coding RNA
Mus musculus
16
04/04/2018
-
43
-
RNA-seq of PBMCs to investigate peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas
RNA-seq of coding RNA
Homo sapiens
54
03/04/2018
-
ENA
56
-
Impaired spermatogenesis, muscle and erythrocyte function in U12 intron splicing-defective Zrsr1 mutant mice
RNA-seq of coding RNA
Mus musculus
18
03/04/2018
-
ENA
78
-
Microarray transcriptional analysis of leptin signaling knockdown and rescue in 72-hour post fertilization zebrafish
transcription profiling by array
Danio rerio
16
02/04/2018
52
-
Genomic copy number changes in breast cancers from patients exposed to ioinising radiation and non-exposed controls
comparative genomic hybridization by array
Homo sapiens
136
02/04/2018
-
64
-
Requirement for the Mediator kinase module for activation of super-enhancer associated genes in colon cancer cells
RNA-seq of coding RNA
Homo sapiens
24
02/04/2018
ENA
66
-
Compatible and incompatible infection of potato by nematode Globodera rostochiensis
RNA-seq of coding RNA
Solanum tuberosum
24
02/04/2018
-
ENA
36
-
Transcriptional profiling of pancreatic beta cells during maturation and with function-inactivating mutations
RNA-seq of coding RNA
Mus musculus
3
01/04/2018
-
ENA
35
-
3-D nasal cultures: Systems toxicological assessment of a candidate modified-risk tobacco product (nasal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
362
01/04/2018
37
-
Single-cell RNA-seq analysis of cutaneous wound healing in mouse
RNA-seq of coding RNA from single cells
Mus musculus
2534
01/04/2018
ENA
41
-
Systematic interaction profiling of human bromodomain-containing proteins reveals complex modes of binder recruitment for BET proteins
ChIP-seq
Homo sapiens
6
01/04/2018
ENA
44
-
Deciphering the transcriptional adaptation of Corynebacterium glutamicum in transition from aerobiosis via microaerobiosis to anaerobiosis via RNA-seq
RNA-seq of coding RNA
Corynebacterium glutamicum ATCC 13032
6
31/03/2018
-
ENA
27
-
Illumina HumanmethylationEPIC array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
25
-
Illumina Humanmethylation450k array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
20
-
RNAseq analysis of colon and ileum tissue from naive wild type, MR1-/- and IL-17A-/- mice
RNA-seq of coding RNA
Mus musculus
24
31/03/2018
ENA
35
-
RNA-Seq analysis of MCV-miR-M1 mimic-transfected HEK293 cells
RNA-seq of coding RNA
Homo sapiens
9
31/03/2018
-
ENA
39
-
Alterations in the gene expression pattern of the pituitary is consistent with the domesticated phenotype in chickens
transcription profiling by array
Gallus gallus
24
31/03/2018
-
26
-
RNA-seq of Heliconius melpomene adult male and female heads (eye+brain), antennae, mouthparts (labial palps+proboscis) and legs
RNA-seq of coding RNA
Heliconius melpomene
10
31/03/2018
-
ENA
27
-
RNA-seq of whole female drosophila wounded and/or infected with Pseudomonas entomophila
RNA-seq of coding RNA
Drosophila melanogaster
22
31/03/2018
-
ENA
21
-
p62/SQSTM1 iCLIP in Human Huh-7 cells
RNA-seq of coding RNA
Homo sapiens
10
31/03/2018
-
ENA
25
-
Whole exome sequencing of mouse ovarian cancer cell line ID8
genotyping by high throughput sequencing
Mus musculus
1
31/03/2018
ENA
238
-
Differentially expressed genes in KPC Cxcr2 KO vs KPC mouse PDAC
RNA-seq of coding RNA
Mus musculus
10
31/03/2018
ENA
226
-
microRNA profiling by array of activated or apoptotic (UV-B treated) T-lymphocytes and corresponding released microvesicles derived from normal healthy donors and systemic lupus erythematosus (SLE) patients
microRNA profiling by array
Homo sapiens
8
31/03/2018
26
-
Role of mevalonate pathway intermediates in anticancer effect of statins
transcription profiling by array
Homo sapiens
20
31/03/2018
20
-
RNA-seq of from Drosophila melanogaster tissues: gut; fatbody; brain; ovary or thorax, fed different diets or diet supplemented with rapamycin
RNA-seq of coding RNA
Drosophila melanogaster
44
30/03/2018
-
ENA
55
-
Pancreatic tissue of 9 week old mice with genotypes Ptf1a-Cre;LSL-KrasG12D and Ptf1a-Cre;LSL-KrasG12D;Ptpn11fl/fl
transcription profiling by array
Mus musculus
6
30/03/2018
36
-
RNA-seq of pericarp of purple-grain wheat Luozhen No.1 of 20 days (D20) shading treatment after pollination, against 20 DAP untreated controls
RNA-seq of coding RNA
Triticum aestivum
2
30/03/2018
ENA
30
-
RNA-seq of transplanted pluripotent stem cells-derived human intestinal organoids upon mechanical lengthening and human jejunum tissues
RNA-seq of coding RNA
Homo sapiens
11
30/03/2018
ENA
30
-
Metabolic maturation during muscle stem cell differentiation is achieved by miR-1/133a-mediated inhibition of the Dlk-Dio3 mega gene cluster
transcription profiling by array
Mus musculus
13
30/03/2018
-
23
-
Transcription profiling by microarray of isolated murine satellite cell differentiation in vitro
transcription profiling by array
Mus musculus
3
30/03/2018
-
31
-
A multi-omics approach to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
RNA-seq of coding RNA
Homo sapiens
17
29/03/2018
-
ENA
20
-
RNA-seq of the diatom Skeletonema marinoi grown in the presence or absence of the copepod Calanus finmarchicus
RNA-seq of coding RNA
Skeletonema marinoi
12
29/03/2018
-
ENA
34
-
Transcriptional analysis using E13.5 mouse eyes of TGFb2/GDNF mutants compared to WT
transcription profiling by array
Mus musculus
6
29/03/2018
-
27
-
Gene array of human mammary epithelial cell HMEC transfected with miR-106a-3p mimic against transfected control mimic
transcription profiling by array
Homo sapiens
6
28/03/2018
-
30
-
Whole genome microarray of bendiocarb-resistant An. gambiae mosquitoes from Uganda
transcription profiling by array
Anopheles gambiae S
40
28/03/2018
-
28
-
Transcription profiling by array of resting memory OT-I T_CXCR4 or OT-I T_Control cells isolated from the spleen 90 days following DC vaccination
transcription profiling by array
Mus musculus
6
28/03/2018
13
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by RNA-seq of CD8+ effector T cells isolated from the blood and skin of HSCT patients developing acute pattern GVHD
RNA-seq of coding RNA
Homo sapiens
15
28/03/2018
ENA
38
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+7 post-transplant (FTY720)
transcription profiling by array
Mus musculus
9
28/03/2018
13
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+6 post-transplant (F>M model)
transcription profiling by array
Mus musculus
48
28/03/2018
14
-
RNA-seq of pericarp of Triticum aestivum Luozhen No.1, field study in Tai’an (China) at 15 and 20 days post pollination in response to shading treatment after pollination compared to untreated controls
RNA-seq of coding RNA
Triticum aestivum
8
26/03/2018
ENA
48
-
Small RNA-seq of quiescent, activated of differentiated mouse skeletal muscle stem cells
microRNA profiling by high throughput sequencing
Mus musculus
7
24/03/2018
-
ENA
38
-
RNAseq of peripheral blood mononuclear cells from related Hyperimmunoglobinemia D patients presenting with different phenotypes
RNA-seq of coding RNA
Homo sapiens
16
23/03/2018
-
ENA
46
-
Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid
RNA-seq of coding RNA
Arabidopsis thaliana
20
23/03/2018
-
ENA
23
-
A microarray meta-dataset of non-small cell lung cancer
transcription profiling by array
Homo sapiens
1118
23/03/2018
-
163
-
Targeting NAT10 enhances healthspan and lifespan in a mouse model of human accelerated aging syndrome
RNA-seq of coding RNA
Mus musculus
12
22/03/2018
-
ENA
47
-
Dam-specific RNA-seq
RNA-seq of coding RNA
Mycoplasma pneumoniae
5
22/03/2018
-
ENA
25
-
Affymetrix gene expression array (mouse 2.0) of sorted undifferentiated spermatogonia in inducible Miwi2 knock-out model
transcription profiling by array
Mus musculus
8
21/03/2018
-
45
-
Targeted sequencing of 49 primary medulloblastoma samples using Illumina TruSight Tumor 15 assay
DNA-seq
Homo sapiens
49
20/03/2018
-
ENA
83
-
Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure
RNA-seq of coding RNA
Cyclopterus lumpus
13
20/03/2018
ENA
66
-
Transcriptional profiling of E. coli K-12 and E. coli O157 (Sakai) following heat shock at 45 degree celsius
transcription profiling by array
Escherichia coli
6
20/03/2018
30
-
Genome-Wide Translation Profiling by Ribosome-Bound tRNA Capture
RNA-seq of non coding RNA
Saccharomyces cerevisiae
244
19/03/2018
-
ENA
80
-
ChIp-seq of HeLa cells with anti-glucocorticoid (GR) antibodies
ChIP-seq
Homo sapiens
8
19/03/2018
ENA
55
-
Microglia have a more extensive and divergent response to interferon-alpha compared with astrocytes
transcription profiling by array
Mus musculus
8
18/03/2018
28
-
DNA sequencing of Arabidopsis thaliana nrpd1-3 background with novel insertions of LTR retrotransposon ONSEN/COPIA78
DNA-seq
Arabidopsis thaliana
11
18/03/2018
-
ENA
22
-
DNA sequencing of Arabidopsis thaliana wild-type and nrpd1-3 under control or heat stress
DNA-seq
Arabidopsis thaliana
4
18/03/2018
-
ENA
24
-
Saccharomyces cerevisiae transcriptome analysis of conditional yjr141w-psd mutant compared to control strain
transcription profiling by array
Saccharomyces cerevisiae
12
18/03/2018
-
28
Identifying crossover locations in Arabidopsis thaliana wild-type Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
74
17/03/2018
-
ENA
17
-
RNA seq of fluid shear stress treated mouse renal epithelial cells
RNA-seq of coding RNA
Mus musculus
8
15/03/2018
ENA
24
-
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) xenografts in NSG or NSG-S mice (samples enriched in hCD45)
genotyping by high throughput sequencing
Homo sapiens, Mus musculus
26
15/03/2018
-
ENA
35
-
Role of mTOR signaling in mesenchamyl tissue response to inflammation in rheumatoid arthritis
transcription profiling by array
Homo sapiens
20
15/03/2018
-
46
-
Transcription profiling by array of liver from patients with varying stages of non-alcoholic fatty liver disease
transcription profiling by array
Homo sapiens
88
15/03/2018
115
-
RNAseq study (root and shoot) of Holcus lanatus ecotypes selected from two widely contrasting habitats, acid bog (pH 3.5) or limestone quarry spoil (pH 7.5)
RNA-seq of coding RNA
Holcus lanatus
39
15/03/2018
-
ENA
67
-
Agilent CGH + SNP array in 7 tumoral samples of Juvenile Myelomonocytic Leukemia (JMML)
comparative genomic hybridization by array
Homo sapiens
7
14/03/2018
-
22
-
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) cells and paired fibroblasts (germline controls) when available
genotyping by high throughput sequencing
Homo sapiens
28
14/03/2018
-
ENA
24
-
RNA-seq of sciatic nerve from mice expressing the transcription factor Miz1 with deletion of the POZ domain
RNA-seq of coding RNA
Mus musculus
8
14/03/2018
-
ENA
25
Neochloris oleoabundans under salt and nitrogen stress
RNA-seq of coding RNA
Neochloris oleoabundans
8
14/03/2018
-
ENA
27
-
Microarray analysis of eyes only from 23-hpf wild-type and pitx2M64* homozygous mutant zebrafish embryos
transcription profiling by array
Danio rerio
6
13/03/2018
-
19
-
Diurnal gene expression in Populus tremula x P. tremuloides wild type and lhy RNAi line 10
transcription profiling by array
Populus tremula x Populus tremuloides
26
13/03/2018
37
-
Whole-Genome Gene Expression Bead Array analysis of Toll-like receptor 2/8 stimulated human monocytes
transcription profiling by array
Homo sapiens
72
09/03/2018
-
17
-
Defective germline reprogramming rewires the spermatogonial transcriptome
Bisulfite-seq
Mus musculus
3
09/03/2018
ENA
11
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (microRNA data)
transcription profiling by array
Homo sapiens
80
08/03/2018
24
-
Transcription profiling by array to investigate the pattern of gene expression of B cells derived from Galectin-3 knockout mice
transcription profiling by array
Mus musculus
12
08/03/2018
-
32
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (mRNA data)
transcription profiling by array
Homo sapiens
75
08/03/2018
23
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
262
07/03/2018
7
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
251
07/03/2018
18
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (gingival epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
192
07/03/2018
8
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (gingival epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
188
07/03/2018
9
-
CAGE on Drosophila mesodermal embryo samples
RNA-seq of coding RNA
Drosophila melanogaster
4
07/03/2018
-
ENA
7
-
Transcriptome analysis of budding yeast strains manipulated in RPL22A and RPL22B genes
RNA-seq of coding RNA
Saccharomyces cerevisiae
16
07/03/2018
-
ENA
8
-
Microarray analysis of 7 week control and nwasp knockout mouse backskin
transcription profiling by array
Mus musculus
2
06/03/2018
-
8
-
ChIP-Seq analysis of CCCTC-binding factor (CTCF) binding in rodents
ChIP-seq
Mus caroli, Mus musculus domesticus, Mus pahari
12
06/03/2018
ENA
12
-
RNA-seq analysis of Mus caroli and Mus pahari
RNA-seq of coding RNA
Mus caroli, Mus pahari
12
06/03/2018
-
ENA
5
-
Determination of effects of propionate on gene expression in human cerebromicrovascular endothelial cell line hCMEC/D3
transcription profiling by array
Homo sapiens
6
05/03/2018
-
14
-
Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
RNA-seq of coding RNA
Eosphagnum inretortum, Flatbergium novo-caledoniae, Flatbergium sericeum, Sphagnum cribrosum
4
05/03/2018
-
ENA
9
-
RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10
RNA-seq of coding RNA
Homo sapiens
20
04/03/2018
ENA
70
-
Methylation arrays elucidate 5mC and 5hmC levels of human glioblastoma cell line LN229 upon restoration of TET3 expression
methylation profiling by array
Homo sapiens
8
03/03/2018
34
-
Analysis of the dose-dependent response of the ribosome-targeting antibiotic lincomycin on gene expression and its relationship to growth and secondary metabolism of S. coelicolor A3(2)
RNA-seq of coding RNA
Streptomyces coelicolor A3(2)
2
02/03/2018
-
ENA
22
-
Contribution of the Hog1 SAPK to nitrosative stress response in Candida albicans
RNA-seq of coding RNA
Candida albicans
24
02/03/2018
ENA
34
-
Systems Toxicology Assessment of the Biological Impact of a Candidate Modified Risk Tobacco Product on Human Organotypic Oral Epithelial Cultures (miRNA dataset)
transcription profiling by array
Homo sapiens
331
01/03/2018
45
-
Short Tandem Repeats - Targeted-Sequencing of human cells for Lineage tracing
genotyping by high throughput sequencing
Homo sapiens
210
01/03/2018
-
ENA
55
-
Genome-wide binding sites of NF90/ILF3 in K562 erythroleukemia cells
ChIP-seq
Homo sapiens
1
01/03/2018
ENA
38
-
Autoantibody profiling of sera from individuals with Systemic Lupus Erythematosus (SLE) by protein microarray
proteomic profiling by array
Homo sapiens
649
01/03/2018
-
61
-
Microarray transcriptional profiling of three-spined stickleback (Gasterosteus aculeatus) exposed to 10 different model toxicants and 26 mixtures of these toxicants
transcription profiling by array
Gasterosteus aculeatus
522
01/03/2018
-
29
-
Genome-wide copy number alteration analysis to identify genetic signature for development of distant metastases in Papillary Thyroid Cancer
comparative genomic hybridization by array
Homo sapiens
204
01/03/2018
-
44
-
RNAi knock down using siRNAs targeting PROX1 or §-catenin in human colon carcinoma cells
transcription profiling by tiling array
Homo sapiens 48 hours
10
01/03/2018
48
-
Microarray analysis of human umbilical vein endothelial cells (HUVECs) chronically irradiated with low dose-rate of ionizing radiation for one, three and six weeks
transcription profiling by array
Homo sapiens
27
28/02/2018
-
50
-
Transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
RNA-seq of coding RNA
Triticum aestivum
22
28/02/2018
-
ENA
50
-
RNA-Seq of Heliconius melpomene heads
RNA-seq of coding RNA
Heliconius melpomene
4
28/02/2018
-
ENA
30
-
microRNA profile of bovine monocyte-derived macrophages infected in vitro with Streptococcus agalactiae
RNA-seq of non coding RNA
Bos taurus
20
28/02/2018
-
ENA
33
-
Transcription profiling by array of osteoarthritic bone marrow lesions compared to normal bone
transcription profiling by array
Homo sapiens
24
28/02/2018
-
73
Gene expression profiling of 48 primary medulloblastoma samples
transcription profiling by array
Homo sapiens
48
27/02/2018
-
67
-
Genotyping by array of 123 IDH WT glioblastomas
genotyping by array
Homo sapiens
123
27/02/2018
-
46
-
Transcriptional profiling of primary human alveolar macrophages challenged with Streptococcus pneumoniae from patients with chronic obstructive pulmonary disease compared to healthy donors
transcription profiling by array
Homo sapiens
12
26/02/2018
86
-
Role of Fnr1 and Fnr3 in transcriptional regulation under oxygen limitation in Herbaspirillum seropedicae
ChIP-seq
Herbaspirillum seropedicae
4
26/02/2018
ENA
32
-
Transcriptional analysis of primary human monocyte-derived dendritic cells (moDCs) infected with different Zika virus strains and YF17D virus
transcription profiling by array
Homo sapiens
15
26/02/2018
-
45
-
RNA-Seq transcriptional analysis of Herbaspirillum seropedicae fnr1 and fnr3 deletion mutants in comparison with the wild type under two different oxygen regimes
RNA-seq of coding RNA
Herbaspirillum seropedicae
12
26/02/2018
ENA
36
-
Transcriptional profiling of 5T33MM cells treated in vivo with quisinostat, decitabine or the combination
transcription profiling by array
Mus musculus
16
26/02/2018
312
RNA-seq of Primary Human Hepatocytes (PHH) exposed to Valproic Acid (VPA) for 3 days daily and 3 days daily exposure followed by 3 days washout
RNA-seq of coding RNA
Homo sapiens
24
23/02/2018
-
ENA
112
MeDIP profiling by high-throughput sequencing of Primary Human Hepatocytes (PHH) exposed to Valproic Acid (VPA) for 3 days daily and 3 days daily exposure followed by 3 days washout
MeDIP-seq
Homo sapiens
16
23/02/2018
-
ENA
57
-
iCLIP of the RNA-binding protein ARPP21
CLIP-seq
Homo sapiens
4
23/02/2018
ENA
64
-
RNA-seq of leaf, root, and stem xylem from Western poplar (Populus trichocarpa) plants in response to drought, high salinity, heat and cold stress
RNA-seq of coding RNA
Populus trichocarpa
81
23/02/2018
-
ENA
135
Kinetics of L cells transcriptional profiling over the course of colonization in germ-free mice
transcription profiling by array
Mus musculus
17
22/02/2018
-
35
-
PRO-cap in Drosophila melanogaster embryo at 3-4h and 6-8h after egg laying
RNA-seq of coding RNA
Drosophila melanogaster
4
22/02/2018
-
ENA
34
-
Autoinflammation with enhanced type I interferon signaling due to DNASE2 mutations
RNA-seq of coding RNA
Homo sapiens
13
22/02/2018
-
ENA
106
-
L cells transcriptional profiling from germ-free and conventional mice
transcription profiling by array
Mus musculus
24
21/02/2018
-
64
-
RNA-seq of enriched barley stomatal complexes versus total leaves
RNA-seq of coding RNA
Hordeum vulgare
3
21/02/2018
-
ENA
45
-
Gene expression profiling of peripheral blood mononuclear cells (PBMCs) 8 hours after exposure to 1 Gy of carbon or iron ions
transcription profiling by array
Homo sapiens
16
21/02/2018
-
83
Senataxin resolves R-loops forming at DNA double strand breaks to prevent translocations
ChIP-seq, RNA-seq of coding RNA
Homo sapiens
7
20/02/2018
-
ENA
70
-
RNA-seq of Nostoc sp. PCC 7120 (Anabaena sp. PCC 7120) wild-type strain, hetZ mutant and hetP mutant
RNA-seq of coding RNA
Nostoc sp. PCC 7120
6
19/02/2018
ENA
53
-
Transcription profiling of newly generated and mature mouse splenic plasma cells after immunization with sheep red blood cells
transcription profiling by array
Mus musculus
7
19/02/2018
-
31
-
Transcription profiling by RNA-seq of murine colon tumours after in situ depletion of Nuak1
RNA-seq of coding RNA
Mus musculus
12
19/02/2018
-
ENA
46
-
Comparison of the transcriptomic impact of NRF2 depletion with that of NUAK1 depletion in SW480 colorectal cancer cells
RNA-seq of coding RNA
Homo sapiens
12
19/02/2018
-
ENA
58
-
Meythlation profiling by array to investigate the effect of hyperoxia on DNA methylation in mouse lung tissue
methylation profiling by array
Mus musculus
24
17/02/2018
-
47
-
RNA-seq of total lymph node cells from inducible ll7 gene deletion mice
RNA-seq of coding RNA
Mus musculus
6
16/02/2018
ENA
90
-
DNA Methylation analysis of human tissues from obese patients
methylation profiling by array
Homo sapiens
204
15/02/2018
-
75
-
Expression profiling of human tissues from obese patients
transcription profiling by array
Homo sapiens
65
15/02/2018
-
68
-
RNA-Seq of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC)
RNA-seq of coding RNA
Mus musculus
12
12/02/2018
-
ENA
78
-
Microarray profiling of YTHDF2 deficient mouse oocytes
transcription profiling by array
Mus musculus
10
12/02/2018
-
34
-
Microarray transcriptome profiling of peripheral T-cell lymphomas in two groups differentiated by Twist and Slug protein expression
transcription profiling by array
Homo sapiens
12
11/02/2018
144
-
Sequence Requirements for Cascade Function in a Type I-E CRISPR System: RNA-Seq
RNA-seq of coding RNA
Escherichia coli str. K-12 substr. MG1655
4
10/02/2018
-
ENA
55
-
Gene expression comparison of MCF10A cells with and without extra centrosomes through overexpression of PLK4
transcription profiling by array
Homo sapiens
12
10/02/2018
-
457
-
Organotypic human bronchial epithelial cultures (MucilAir) exposed to mainstream aerosols from the 3R4F cigarette and a novel tobacco vapor product
transcription profiling by array
Homo sapiens
27
09/02/2018
-
75
-
MicroRNA profiling by array of oral squamous cell cancer (OSCC) surgical margins defined by narrow band imaging
microRNA profiling by array
Homo sapiens
44
09/02/2018
61
-
Draft genome sequencing of Lactuca. sativa cv. Tizian
DNA-seq
Lactuca sativa
4
09/02/2018
-
ENA
46
-
Stabilized biological production by product addiction
DNA-seq
Escherichia coli K-12
24
09/02/2018
-
ENA
62
-
RNA-seq as a global measure of the similarity between human pluripotent stem cell and fetal liver derived B cell hierarchies
RNA-seq of coding RNA
Homo sapiens
47
08/02/2018
ENA
92
-
microRNAs as predictive biomarkers of response to sunitinib or pazopanib in patients with metastatic renal cell carcinoma
microRNA profiling by array
Homo sapiens
60
08/02/2018
-
83
-
RNA-seq of Plasmodium falciparum for comparative analysis of clinical isolates with severe and uncomplicated malaria
RNA-seq of coding RNA
Plasmodium falciparum
44
08/02/2018
-
ENA
52
-
Bulk RNA Barcoding and sequencing (BRB-seq) protocol for RNA-seq of human pre-adipocytes and differentiated adipocytes
RNA-seq of coding RNA
Homo sapiens
34
06/02/2018
-
ENA
63
-
Transcriptome analysis of interactions of genes, mtap1 and sgl1, involved in compound inflorescence development in Medicago truncatula
transcription profiling by array
Medicago truncatula
12
06/02/2018
-
39
-
RNA-seq of Pseudomonas aeruginosa PAO1 wild-type and ersA (sRNA) knock-out mutant
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
4
05/02/2018
-
ENA
59
-
Gene expression profiling across ontogenetic stages in wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation
RNA-seq of coding RNA
Leptidea sinapis
60
02/02/2018
-
ENA
93
-
Next generation sequencing for patients with hypomyelinating leukodystrophies
genotyping by high throughput sequencing
Homo sapiens
7
02/02/2018
-
ENA
68
-
Genome-wide profiling reveals cancer-related genes have switched alternative polyadenylation sites in colorectal cancer
RNA-seq of coding RNA
Homo sapiens
6
02/02/2018
-
ENA
113
-
RNA-seq time course of cardiac repair in mouse in response to LAD ligation compared to sham and non-injured controls
RNA-seq of coding RNA
Mus musculus
78
02/02/2018
-
ENA
75
-
Gene expression changes between primary mesothelioma tumour cells and commercially available cell lines, compared to normal primary mesothelial cells
transcription profiling by array
Homo sapiens
38
01/02/2018
-
90
-
RNA-seq analysis of the overexpression of the Fil1 transcription factor in S. pombe
RNA-seq of coding RNA
Schizosaccharomyces pombe
12
01/02/2018
-
ENA
60
-
Next generation sequencing for patients with hypomyelinating leukodystrophies
genotyping by high throughput sequencing
Homo sapiens
15
01/02/2018
-
ENA
73
-
Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation
RNA-seq of coding RNA
Schizosaccharomyces pombe
37
01/02/2018
-
ENA
60
-
RNAseq of human epithelial lung carcinoma cell line A549 exposed to ceria, silver or zinc ions, micron-sized particles or nanoparticles
RNA-seq of coding RNA
Homo sapiens
152
01/02/2018
-
ENA
97
-
Phenotypic analysis of the fil1 transcription factor from S. pombe
RNA-seq of coding RNA
Schizosaccharomyces pombe
16
01/02/2018
-
ENA
72
-
ChIP-seq analysis of the Fil1 transcription factor from S. pombe
ChIP-seq
Schizosaccharomyces pombe
6
01/02/2018
-
ENA
84
-
RNA-seq of SOX2 positive pituitary cells with and without activation of beta-catenin
RNA-seq of coding RNA
Mus musculus
6
01/02/2018
-
ENA
54
-
RNA-seq of ovarian cancer ascites cells
RNA-seq of coding RNA
Homo sapiens
24
01/02/2018
-
ENA
113
-
Transcriptome analysis of WT and gp91-/- mice infected with Salmonella enteric server Typhimurium
transcription profiling by array
Mus musculus
38
01/02/2018
-
39
-
Single-cell RNA-seq of motor neuron progenitors differentiated from mouse embryonic stem cell line HM1 by treatment with RA and SAG
RNA-seq of coding RNA from single cells
Mus musculus
202
01/02/2018
-
ENA
106
-
Transcription profiling by array of murine Ba/F3-ITD cells treated with DMSO or sorafenib
transcription profiling by array
Mus musculus
12
01/02/2018
-
64
Transcription profiling by array of wild type and Hek2 deletion mutants of S. cerevisiae to investigate a SUMO dependent feedback loop which senses and controls nuclear pore subunit biogenesis
transcription profiling by array
Saccharomyces cerevisiae
2
31/01/2018
-
48
-
RNA-Seq of canine transmissible venereal tumors (CTVT)
RNA-seq of coding RNA
Canis lupus familiaris
12
31/01/2018
-
ENA
96
-
Systemic gene expression profiles in patients with ventilator-associated pneumonia
transcription profiling by array
Homo sapiens
56
31/01/2018
83
-
Methylome of 9 canine transmissible veneral tumour (CTVT) samples
MeDIP-seq
Canis lupus familiaris
9
31/01/2018
-
ENA
51
-
RNA-Seq of canine transmissible venereal tumors
RNA-seq of coding RNA
Canis lupus familiaris
6
31/01/2018
-
ENA
81
-
Transcription profiling of Arabidopsis VCS-amiRNA plants under a dehydration stress condition
transcription profiling by array
Arabidopsis thaliana
4
31/01/2018
-
41
-
Transcription profiling of Arabidopsis wild-type plants under a dehydration condition
transcription profiling by array
Arabidopsis thaliana
4
31/01/2018
-
120
-
RNA-seq analysis of mouse (C57/B6) small intestinal tissue after Porcupine Inhibitor treatment or vehicle control
RNA-seq of coding RNA
Mus musculus
20
31/01/2018
ENA
65
Gene expression analysis of breast adenocarninoma cell line T47D treated with particulate matter PM2.5 sampled near the municipal solid waste incineration plant of Bologna city
transcription profiling by array
Homo sapiens
23
31/01/2018
-
48
-
Single-cell RNAseq of Human T lymphocyte derived from H7N9 infected patients
RNA-seq of coding RNA from single cells
Homo sapiens
476
30/01/2018
-
ENA
144
-
Transcription profiling by array of ESC derived hepatocytes treated with either vehicle or high energy substrates to model non alcoholic fatty liver disease
transcription profiling by array
Homo sapiens
12
30/01/2018
-
52
-
ChIP-on-chip of Sgs1 and gammaH2A and DNA:RNA hybrids in wild type and SGS1 mutants
ChIP-chip by tiling array
Saccharomyces cerevisiae
13
30/01/2018
39
-
Trancriptomic profiling of HCT116 colon cancer cells with or without PBRM1 knock-down by RNAi
RNA-seq of coding RNA
Homo sapiens
6
30/01/2018
ENA
63
-
Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis
DNA-seq
Drosophila melanogaster
2
29/01/2018
-
ENA
99
-
Assessing genome instability in Bloom syndrome
MNase-seq, RNA-seq of coding RNA
Homo sapiens, Mus musculus
3934
26/01/2018
-
ENA
106
-
Genotyping data for seven patients from three unrelated, consanguineous multiplex families that presented with combined immunodeficiency, and were found to harbour mutations in CARMIL2
genotyping by array
Homo sapiens
14
25/01/2018
15
-
CD1d-dependent immune suppression mediated by regulatory B cells through modulations of iNKT cells
RNA-seq of coding RNA
Mus musculus
16
25/01/2018
-
ENA
123
-
NUDT21 Negatively Regulates PSMB2 and CXXC5 by Alternative Polyadenylation and Contributes to Hepatocellular Carcinoma Suppression
RNA-seq of coding RNA
Homo sapiens
4
25/01/2018
-
ENA
73
-
RNA-seq of whole blood samples from patients with visceral leishmaniasis
RNA-seq of coding RNA
Homo sapiens
17
25/01/2018
-
ENA
84
-
Expression quantitative trait locus analysis of chicken liver
transcription profiling by array
Gallus gallus
72
25/01/2018
-
38
-
RNAseq analysis of human peritoneal dialysis effluent cells treated with or without alanyl-glutamine supplemented peritoneal dialysis fluid in a randomized controlled cross-over pilot study
RNA-seq of coding RNA
Homo sapiens
11
25/01/2018
-
ENA
45
-
miRNA analysis of human peritoneal dialysis effluent cells treated with or without alanyl-glutamine supplemented peritoneal dialysis fluid in a randomized controlled cross-over pilot study
microRNA profiling by array
Homo sapiens
10
25/01/2018
-
40
-
ChIP-seq of components of the PRC1.6 complex in mouse embryonic stem cells
ChIP-seq
Mus musculus
4
24/01/2018
-
ENA
86
-
ChIP-seq of components of the PRC1.6 complex in HEK293 cells where single components were deleted
ChIP-seq
Homo sapiens
22
24/01/2018
-
ENA
70
-
RNA-seq of gene expression changes in HEK293 cells after deletion of PRC1.6 complex component MGA
RNA-seq of coding RNA
Homo sapiens
6
24/01/2018
-
ENA
60
-
ChIP-seq of CD117-positive primary hematopoietic precursor cell from Meer mice that carry a leukemogenic knock-in of an inducible ENL-ER portion into the mouse Mll locus
ChIP-seq
Mus musculus
7
23/01/2018
-
ENA
42
-
Transcription profiling by array of human hepatocarcinoma SMMC-7721 cells treated with a new compound IMB5043 against untreated controls
transcription profiling by array
Homo sapiens
2
22/01/2018
-
73
-
Microarray gene expression profiling of microglia from control and C6 glioma tumor-bearing brain hemisphere in the rat
transcription profiling by array
Rattus norvegicus
8
22/01/2018
-
81
-
RNA-Seq analysis of an industry isolated Pseudomonas aeruginosa strain following exposure to preservatives and product formulations
RNA-seq of coding RNA
Pseudomonas aeruginosa
32
20/01/2018
-
ENA
101
-
Transcriptional profiling by array of chronic myeloid leukaemia (CML) stem/progenitor cells (CD34+38-) treated with tyrosine kinase inhibitors (imatinib, dasatinib and nilotinib) at different time points (8 hours and 7 days) against untreated controls
transcription profiling by array
Homo sapiens
49
20/01/2018
-
393
-
Time-lapse Deep-seq of E. coli Metabolite Production Pathway
DNA-seq
Escherichia coli K-12
26
19/01/2018
-
ENA
94
-
Genome-wide characterisation of DNA methylation in an invasive Lepidopteran pest, the cotton bollworm Helicoverpa armigera
methylation profiling by high throughput sequencing
Helicoverpa armigera
1
19/01/2018
-
ENA
60
-
RNA-seq transcriptome profiling of the psychrophilic diatom Fragilariopsis cylindrus under six treatments simulating conditions within sea ice
RNA-seq of coding RNA
Fragilariopsis cylindrus
15
18/01/2018
-
ENA
77
-
Ribosome profiling of the retrovirus murine leukemia virus in Rat2 cells
RNA-seq of coding RNA
Rattus norvegicus
9
17/01/2018
-
ENA
84
-
Transcription profiling by array of oral squamous cell cancer (OSCC) surgical margins defined by narrow band imaging
transcription profiling by array
Homo sapiens
49
17/01/2018
98
RNA-seq of human normal mammary gland cells FACS sorted into three populations: ALDH+, ALDH-CD44+CD24-, and ALDH-CD44-CD24+
RNA-seq of coding RNA
Homo sapiens
9
17/01/2018
-
ENA
93
-
microRNA profiling by array of paired samples tumor tissue/normal adjacent tissue from colon cancer patients
microRNA profiling by array
Homo sapiens
10
17/01/2018
-
144
-
MicroRNA analysis in HPV-positive and HPV-negative cervical cancer cell lines
microRNA profiling by array
Homo sapiens
6
16/01/2018
-
80
-
MicroRNA expression profile in human foreskin keratinocytes (HFKs) transduced with retroviral vectors carrying E6 and E7 genes of either HPV6 or HPV16 and with the LXSN empty vector
microRNA profiling by array
Homo sapiens
23
16/01/2018
-
62
-
Transcriptional profiling of triple-negative breast cancer cell lines treated with OTX015
transcription profiling by array
Homo sapiens
11
16/01/2018
100
-
Effect of HE4 overexpression or treatment with recombinant HE4 protein on OVCAR8 ovarian cancer cells
transcription profiling by array
Homo sapiens
12
15/01/2018
130
-
Transcription profiling by array of U-2987-MG glioma derived cell line to investigate the effect of Snail1 overexpression compared to control
transcription profiling by array
Homo sapiens
8
15/01/2018
-
97
-
RNA-seq of platelets derived from blood of healthy human donors in response to physiological stimuli collagen or Thrombin Receptor Activating Peptide compared to untreated controls
RNA-seq of coding RNA
Homo sapiens
9
15/01/2018
-
ENA
457
-
Whole transcriptome profiling by microarray of monocytes stimulated with LPS and treated with trabectedin, lurbinectedin or doxorubicin
transcription profiling by array
Homo sapiens
16
15/01/2018
62
Transcription profiling by array of carcinoma-stem-like cells (CSC) extracted from a primary ovarian cancer cell line
transcription profiling by array
Homo sapiens
6
15/01/2018
56
-
Comparative transcriptomics of Rhizobium mesoamericanum STM3625, Cupriavidus taiwanensis LMG19424 and Burkholderia phymatum STM815 when induced by root exudates of Mimosa pudica
RNA-seq of coding RNA
Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG 19424, Rhizobium mesoamericanum STM3625
18
15/01/2018
-
ENA
42
-
microRNA expression profiling of CML and normal quiescent cells
microRNA profiling by array
Homo sapiens
10
12/01/2018
-
76
-
Immune transcriptional profiling in end-stage renal disease
transcription profiling by array
Homo sapiens
480
11/01/2018
149
-
Dry seed transcriptome differences associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
transcription profiling by array
Arabidopsis thaliana
12
10/01/2018
80
-
Fibroblasts potentiate melanoma cells in vitro invasivity induced by UV-irradiated keratinocytes - transcription profiling
transcription profiling by array
Homo sapiens
10
10/01/2018
-
55
-
Targeted next generation sequencing of cfDNA from lung cancer patients enrolled in the GALAXY-1 trial (NCT01348126)
DNA-seq
Homo sapiens
306
10/01/2018
-
ENA
158
-
Transgenic expression of BEN, a member of TFII-I family, in various murine adipose tissues
RNA-seq of coding RNA
Mus musculus
16
10/01/2018
-
ENA
81
-
Dual IRE1 RNase functions dictate glioblastoma development
transcription profiling by array
Homo sapiens
119
09/01/2018
-
62
-
Gene expression profile of Huh7 cells upon knock-down of FOXA2 or FOXA2-DS-S
transcription profiling by array
Homo sapiens
9
09/01/2018
305
-
Stromal myofibroblasts drive tumorigenesis in Peutz-Jeghers Syndrome polyposis models
RNA-seq of coding RNA
Mus musculus
15
05/01/2018
ENA
94
-
Transcription profiling by array of human macrophages treated with miR-182 and infected with Francisella tularensis
transcription profiling by array
Homo sapiens
12
05/01/2018
-
93
-
Comparative biological impacts of an aerosol from carbon-heated tobacco and smoke from cigarettes on human respiratory epithelial cultures: A systems toxicology assessment (small airway epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
148
04/01/2018
8
-
Comparative biological impacts of an aerosol from carbon-heated tobacco and smoke from cigarettes on human respiratory epithelial cultures: A systems toxicology assessment (small airway epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
142
04/01/2018
7
-
Comparative biological impacts of an aerosol from carbon-heated tobacco and smoke from cigarettes on human respiratory epithelial cultures: A systems toxicology assessment (nasal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
215
04/01/2018
6
-
Comparative biological impacts of an aerosol from carbon-heated tobacco and smoke from cigarettes on human respiratory epithelial cultures: A systems toxicology assessment (nasal epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
214
04/01/2018
7
-
miRNA profiling of human umbilical cord derived mesenchymal stem cells in the process of smooth muscle cell differentiation
microRNA profiling by array
Homo sapiens
9
04/01/2018
-
30
-
RNAseq analysis of Xcc strain B100 in minimum media
RNA-seq of coding RNA
Xanthomonas campestris pv. campestris
1
04/01/2018
-
ENA
79
-
RNA-seq of WTAP knockdown human pluripotent stem cells during the exit from pluripotency induced by Activin/Nodal inhibition
RNA-seq of coding RNA
Homo sapiens
18
04/01/2018
-
ENA
127
Transcription profiling by array of neonatal mouse cardiomyocytes (NMC) cultured in hypoxia (3% O2) with and without a lentiviral shRNA-mediated knockdown of Sf3b1 to investigate alternative splicing
transcription profiling by array
Mus musculus
6
03/01/2018
-
59
-
Cytokine-mediated natural killer cells effects impair hematopoietic stem cell function
transcription profiling by array
Mus musculus
16
02/01/2018
-
71
-
RNA-seq analysis of grxs17 seedlings
RNA-seq of coding RNA
Arabidopsis thaliana
3
02/01/2018
-
ENA
60
-
Pdx1 occupancy during mouse and human development
ChIP-seq
Mus musculus
3
02/01/2018
ENA
103
-
ncRNA (T-UCR and miRNAs) expression profiles in mouse embryonic stem cells and differentiated neuronal/glial cells
transcription profiling by array
Mus musculus
6
01/01/2018
-
14
-
RNA-seq of human U2OS cells depleted of NUAK1 by shRNA compared to control
RNA-seq of coding RNA
Homo sapiens
6
01/01/2018
-
ENA
100
-
Transcription profiling by array of adult mouse lung exposed to room air (control) or 100% oxygen between postnatal days 0 to 4
transcription profiling by array
Mus musculus
6
01/01/2018
-
95
-
Detecting Early Signs of Heat and Drought Stress in Phoenix dactylifera (Date Palm)
RNA-seq of coding RNA
Phoenix dactylifera
32
01/01/2018
-
ENA
75
-
Microarray experiment to characterise the signalling pathways downstream SUCNR1 activation in murine Neural Stem Cells (NSCs)
transcription profiling by array
Mus musculus
12
01/01/2018
-
69
-
Microarray experiment of murine macrophages co-cultured with neural stem cells in the presences of LPS
transcription profiling by array
Mus musculus
16
01/01/2018
-
64
-
Characterization of the transcriptional response to hypoxia in MDA-MB-231-shCAIX, MCF7-shCAIX and the respective control cells grown as multicellular spheroids under hypoxic or normoxic conditions
transcription profiling by array
Homo sapiens
16
01/01/2018
-
104
-
RNA-seq analysis of normoxic and hypoxic tumor-associated macrophages from wild type or REDD1 knockout mice
RNA-seq of coding RNA
Mus musculus
16
01/01/2018
-
ENA
124
RIP-chip by array of intestinal tumours from Elavl1 overexpressing and wild-type mice in a mouse model of colitis associated cancer
RIP-chip by array
Mus musculus
6
01/01/2018
-
58
-
Transcription profiling by array of intestinal tumours from Elavl1 overexpressing and wild-type mice in a mouse model of colitis associated cancer
transcription profiling by array
Mus musculus
6
01/01/2018
-
45
-
Translation profiling by array of mouse epithelial cell lines (CMT93) in which HuR is overexpressed or knocked down
translation profiling
Mus musculus
6
01/01/2018
-
45
-
Gene expression profiling of 621-101 cells with rapamycin treatment and Rheb downregulation
transcription profiling by array
Homo sapiens
12
01/01/2018
-
94
-
Transcriptome responses in the abscission, distal and proximal regions of the flower pedicel during shedding of flower in Euphorbia pulcherrima
RNA-seq of coding RNA
Euphorbia pulcherrima
36
31/12/2017
-
ENA
59
-
RNA-IP of TAP-tagged 4EIP in Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
4
31/12/2017
-
ENA
47
-
Control human blood RNA
RNA-seq of coding RNA
Homo sapiens
3
31/12/2017
-
ENA
60
-
Deconvolution ChIP-seq profiling of UTF and RPA194 in K562 cells to identify analogous enhancer structures on mouse and human ribosomal RNA genes
ChIP-seq
Homo sapiens
4
31/12/2017
-
ENA
68
-
Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems
transcription profiling by array
Arabidopsis thaliana
6
31/12/2017
-
42
Trigeminal Ganglion Transcriptome Analysis in Rat Models of Medication Overuse Headache Reveals Coherent and Widespread Induction of Pronociceptive Gene Expression Patterns
transcription profiling by array
Rattus norvegicus
2
31/12/2017
-
36
-
Differential expression analysis of human small RNAs in young normal, old normal (protected)) and old osteoarthritis (unprotected ) knee cartilage
microRNA profiling by array
Homo sapiens
29
31/12/2017
-
103
-
Differential expression analysis of small RNAs in young normal and old osteoarthritis cartilage
microRNA profiling by array
Homo sapiens
12
31/12/2017
-
77
-
RNA-seq of hippocampal samples from IL-18KO/APP/PS1 , WT, IL-18KO, and APP/PS1 mice
RNA-seq of coding RNA
Mus musculus domesticus
16
31/12/2017
-
ENA
71
-
Molecular response of Atinian elm during vessel invasion by vascular pathogen Ophiostoma novo-ulmi
transcription profiling by array
Ulmus minor
15
31/12/2017
-
36
-
Simple sequence repeat identification for RSS1 gene in multiple varieties of Oryza sativa
DNA-seq
Oryza sativa, Oryza sativa Indica Group, Oryza sativa Japonica Group
6
31/12/2017
-
ENA
41
-
Simple sequence repeat identification for RBOHB gene in multiple varieties of Oryza sativa
DNA-seq
Oryza sativa, Oryza sativa Indica Group, Oryza sativa Japonica Group
6
31/12/2017
-
ENA
36
-
Gene expression profiling of acute myeloid leukemia samples from Polish adult AML-M1 and M2 patients
transcription profiling by array
Homo sapiens
118
31/12/2017
-
108
-
Transcription profiling of HL-60 acute myeloid leukemia cells treated with Daunorubicin (DNR), Cytarabin (Ara-C), or NADPH oxidase inhibitor VAS2870
transcription profiling by array
Homo sapiens
12
31/12/2017
80
-
Microarray analysis of Du145, PC3 and LNCaP human prostate cancer cell lines
transcription profiling by tiling array
Homo sapiens
36
31/12/2017
-
109
-
RNA-Seq analysis in bovine muscle
RNA-seq of coding RNA
Bos taurus
8
31/12/2017
-
ENA
50
-
RNAseq of coding RNA in the liver, spleen, kidney, abdominal muscle and gonadal adipose tissue of knock out mice and wild type controls
RNA-seq of coding RNA
Mus musculus
94
31/12/2017
-
ENA
71
Next Generation Sequencing Analysis of Wild Type and VAChTNkx2.1-Cre-flox/flox Hippocampal Transcriptomes
RNA-seq of coding RNA
Mus musculus
7
31/12/2017
ENA
36
-
Defining the genomic occupancy of the general regulatory factor Abf1 in budding yeast
ChIP-chip by array
Saccharomyces cerevisiae
3
31/12/2017
-
30
-
Wilms tumour arises from a precursor cell capable of generating the entire kidney
transcription profiling by array
Homo sapiens
32
31/12/2017
-
50
-
Transcription of Alkylsuccinate Synthase Genes in Desulfatibacillum alkenivorans AK-01
transcription profiling by array
Desulfatibacillum alkenivorans
12
31/12/2017
26
-
The genome-scale DNA-binding of FadR transcription factor in Sulfolobus acidocaldarius
ChIP-seq
Sulfolobus acidocaldarius DSM 639
6
30/12/2017
-
ENA
32
-
Rat infection with Trypanosoma rhodesiense clinical isolates
RNA-seq of coding RNA
Rattus norvegicus
10
30/12/2017
-
ENA
36
-
Transcription profiling of endometrial cancer comparing aggressive primary tumors and metastases
transcription profiling by array
Homo sapiens
111
30/12/2017
139
-
Transcription profiling by array of a pancreatic cancer cell line treated with 8 different statins compared with untreated or vehicle treated controls
transcription profiling by array
Homo sapiens
53
30/12/2017
64
-
Molecular and cellular dynamics in the skin, the lymph nodes and the blood of the immune response to intradermal injection of Modified Vaccinia Ankara vaccine
transcription profiling by array
Macaca fascicularis
21
29/12/2017
-
44
-
RNA seq of different species of Salsoleae with different photosynthetic types
RNA-seq of coding RNA
Hammada scoparia, Salsola divaricata, Salsola oppositifolia, Salsola webbii
24
29/12/2017
-
ENA
36
-
Effect of silencing DLC1 (Deleted in Liver Cancer 1) in Human Umbilical Vein Endothelial Cells (HUVEC)
transcription profiling by array
Homo sapiens
11
28/12/2017
-
81
-
Activin/Nodal-dependent N6-methyladenosine (m6A) deposition in human pluripotent stem cells
RIP-seq, methylation profiling by high throughput sequencing
Homo sapiens
12
26/12/2017
-
ENA
111
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run6)
DNA-seq
Danio rerio
17
25/12/2017
ENA
61
-
Identification of drought responsive genes at reproductive stage in upland rice variety Nagina22 through comparative microarray analysis
transcription profiling by array
Oryza sativa Indica Group
6
25/12/2017
-
63
North American Beaver (Castor canadensis) RNAseq 16 pooled tissue samples
RNA-seq of coding RNA
Castor canadensis
1
24/12/2017
-
ENA
54
-
Transcription profiling of Arabidopsis srk2abgh mutant plants under a dehydration stress condition
transcription profiling by array
Arabidopsis thaliana
4
24/12/2017
-
56
-
Transcriptional profiling using microarrays to elucidate the effects of partial whiB1 gene deletion in Mycobacterium tuberculosis H37Rv
transcription profiling by array
Mycobacterium tuberculosis
8
22/12/2017
-
59
-
Giant marker chromosomes in cancer
genotyping by array
Homo sapiens
4
22/12/2017
-
58
-
ACE-Scan of the natural add riboswitch aptamer on 10^10 Gen1 DNA microarrays with varying buffer temperatures and Mg2+ cation concentrations
comparative genomic hybridization by array
synthetic construct
24
20/12/2017
-
17
-
ACE-Scan of the thrombin DNA aptamer on 10^10 Gen1 DNA microarrays with sodium and potassium buffers in two colors
comparative genomic hybridization by array
synthetic construct
12
20/12/2017
-
13
-
ACE-Scan of the cocaine DNA aptamer on 10^12 Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
11
-
ACE-Scan of the ATP RNA aptamer on 10^12 Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
1
20/12/2017
-
11
-
ACE-Scan of the ATP DNA aptamer on various density Gen2 DNA microarrays
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
12
-
ACE-Scan of the ATP DNA aptamer on 10^12 density Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
13
-
Bulk RNA-seq validation experiment comparing blood from healthy donors and two groups of metastatic melanoma patients: responders and non-responders to anti-PD-1 immunotherapy
RNA-seq of coding RNA
Homo sapiens
12
20/12/2017
-
ENA
416
-
Genome wide analysis of STAT3-mediated transcription and binding sites in mouse female germ stem cell (ChIP-seq)
ChIP-seq
Mus musculus
2
20/12/2017
-
ENA
54
-
Genome wide analysis of STAT3-mediated transcription and binding sites in mouse female germ stem cell (RNA-seq)
RNA-seq of coding RNA
Mus musculus
4
20/12/2017
-
ENA
79
-
Transcription profiling by array to investigate doxorubicin-induced toxicity in human cardiomyocytes derived from embryonic stem cell line SA121
transcription profiling by array
Homo sapiens
51
19/12/2017
-
103
Transcription profiling by array of decidual CD8+ CCR7-CD45RA- Effector-Memory T cells
transcription profiling by array
Homo sapiens
16
19/12/2017
-
95
-
Methylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cell types of origin
methylation profiling by array
Homo sapiens
92
19/12/2017
-
100
-
Transcriptome analysis of PE-degrading Pseudomonas aeruginosa
RNA-seq of coding RNA
Pseudomonas aeruginosa
4
19/12/2017
-
ENA
70
-
Control libraries for Arabidopsis thaliana Col-0 flower buds
DNA-seq
Arabidopsis thaliana
6
18/12/2017
-
ENA
77
-
The global effect of hypochlorite stress on the changes in the transcriptome in Staphylococcus aureus USA300
RNA-seq of coding RNA
Staphylococcus aureus subsp. aureus USA300
6
18/12/2017
-
ENA
74
-
Microarray analysis of human A549 lung cancer cells treated with brefeldin A, golgicide A, monensin or vehicle control for 8 h or 20 h
transcription profiling by array
Homo sapiens
30
18/12/2017
-
126
Transcription profiling of mature and developing leaves of 8 species of the genus Flaveria (F.pringlei, F.robusta, F.floridana, F.ramosissima, F.brownii, F.palmeri, F.bidentis and F.trinervia)
transcription profiling by array
Flaveria bidentis, Flaveria brownii, Flaveria floridana, Flaveria palmeri, Flaveria pringlei, Flaveria ramosissima, Flaveria robusta, Flaveria trinervia
16
18/12/2017
-
41
-
Transcription profiling by array of Ebf2-expressing bone marrow mesenchymal cells from Ebf2-GFP heterozgous and Ebf2-GFP homozygous mice
transcription profiling by array
Mus musculus
12
17/12/2017
-
55
-
RNA-Seq data: RNA-IP (TAP-ZC3H30 pull down followed by RNA-Seq) and total transcriptomics (Effect of ZC3H30 gene deletion) in procyclic form of T. brucei
RNA-seq of coding RNA
Trypanosoma brucei
12
16/12/2017
-
ENA
51
-
RNAi of XAC1 (Tb927.7.2780) in Trypanosoma brucei bloodstream forms
RNAi profiling by high throughput sequencing
Trypanosoma brucei
4
16/12/2017
-
ENA
54
-
Transcriptomic-wide shifts in diurnal gene expression from the disruption of light-dark cycle in a model cnidarian
transcription profiling by array
Nematostella vectensis
12
16/12/2017
45
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 10)
RNA-seq of coding RNA
Danio rerio
11
15/12/2017
ENA
20
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 9)
RNA-seq of coding RNA
Danio rerio
16
15/12/2017
ENA
17
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 8)
RNA-seq of coding RNA
Danio rerio
10
15/12/2017
ENA
17
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 7)
DNA-seq
Danio rerio
16
15/12/2017
ENA
20
-
RNA-seq of human myoblasts isolated from Duchenne muscular dystrophy (DMD) and histologically normal muscle biopsies with or without overexpression of he Polycomb group geneBMI1
RNA-seq of coding RNA
Homo sapiens
96
15/12/2017
ENA
96
-
Transcriptional profiling of activated CD4+ memory T cells exposed to anti-TNF and recombinant human TNF-alpha in vitro
RNA-seq of coding RNA
Homo sapiens
8
15/12/2017
ENA
121
Methylation profiling by array of 79 glioblastoma (GBM) patients in a validation cohort to demonstrate the performance and the robustness of an identified six-CpGs biomarker for GBM management
methylation profiling by array
Homo sapiens
79
15/12/2017
108
-
Proteomic profiling of human monocytes stimulated in vitro with Neisseria meningitidis and IL-10
proteomic profiling by array
Homo sapiens
96
15/12/2017
-
49
-
Analysis of binding of the transcriptional factor Nrf1 in mouse embryonic stem cells
ChIP-seq
Mus musculus
3
15/12/2017
-
ENA
42
-
ATAC-seq time-course of human and mouse T helper type 2 cells
ATAC-seq
Homo sapiens, Mus musculus
120
14/12/2017
-
ENA
77
-
RNA-seq of mouse pancreatic pericytes from wild-type and Tcf7l2-mutated mice
RNA-seq of coding RNA
Mus musculus
9
14/12/2017
-
ENA
173
-
Gene expression changes induced by MV130 (Bactek®) in human monocytes-derived dendritic cells
transcription profiling by array
Homo sapiens
8
14/12/2017
43
Oryza sativa ssp. indica Illumina lwhole-genome bisulfite sequencing used for coverage comparison next to the method plant-RRBS
Bisulfite-seq
Oryza sativa Indica Group
4
14/12/2017
-
ENA
39
-
Oryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling
Bisulfite-seq
Oryza sativa Indica Group
20
14/12/2017
-
ENA
48
-
Natural variation of gibberellin responses in Arabidopsis thaliana
RNA-seq of coding RNA
Arabidopsis thaliana
45
14/12/2017
ENA
40
-
Expression analysis of Arabidopsis seedlings 3h and 2h after transfer to sucrose
RNA-seq of coding RNA
Arabidopsis thaliana
12
14/12/2017
ENA
59
-
RNA-Seq analysis of human osteoarthritic intact cartilage following total knee replacement
RNA-seq of coding RNA
Homo sapiens
75
13/12/2017
-
ENA
165
-
Global analysis of miRNA expression profile during Mycobacterium tuberculosis infection of human primary dendritic cells
microRNA profiling by array
Homo sapiens
20
12/12/2017
146
-
Methylation array profiling of 24 Pancreatic Ductal Adenocarcinoma samples
methylation profiling by array
Homo sapiens
24
12/12/2017
-
73
-
SNP array profiling of 24 Pancreatic Ductal Adenocarcinoma samples
genotyping by array
Homo sapiens
24
12/12/2017
-
57
-
RNA sequencing of pancreatic adenocarcinoma (PDAC) xenograft samples
RNA-seq of coding RNA
Homo sapiens
30
12/12/2017
-
ENA
215
-
miRNA profiling by high-throughput sequencing of pancreatic adenocarcinoma (PDAC) xenografts
microRNA profiling by high throughput sequencing
Homo sapiens
29
12/12/2017
-
ENA
76
-
Methylation profiling by array of pancreatic adenocarcinoma (PDAC) xenografts
methylation profiling by array
Homo sapiens
30
12/12/2017
-
49
-
SNP profiling of pancreatic adenocarcinoma (PDAC) xenografts
genotyping by array
Homo sapiens
30
12/12/2017
-
164
-
Small non-coding RNAs as biomarkers of musculoskeletal ageing and osteoarthritis
RNA-seq of non coding RNA
Mus musculus
41
12/12/2017
-
ENA
62
-
CCR8 expression defines tissue-resident memory T cells in human skin
RNA-seq of coding RNA
Homo sapiens
32
11/12/2017
-
ENA
64
-
Comparison of gene expression in adult and larvae Drosophila melanogaster strains modified with tTAV-based positive feedback loop
transcription profiling by array
Drosophila melanogaster
60
11/12/2017
-
20
-
RNA-seq of Spinocerebellar Ataxia Type2 (SCA2) transgenic mouse lines and age-matched wild-type
RNA-seq of coding RNA
Mus musculus
64
09/12/2017
-
ENA
86
-
Testis transcriptome alterations in zebrafish (Danio rerio) with reduced fertility due to developmental exposure to 17alpha-ethynylestradiol
RNA-seq of coding RNA
Danio rerio
12
09/12/2017
ENA
88
-
Expression Profiling by array of Long Noncoding RNAs in Peripheral Blood Mononuclear Cells from Multiple Sclerosis Patients
transcription profiling by array
Homo sapiens
11
08/12/2017
-
70
-
The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity
transcription profiling by array
Mus musculus
8
08/12/2017
-
52
-
Transcription profiling array of human glioblastoma cell line U87MG comparing control cells (U87RNAi) with U87shLAPTM5 knockdown cells
transcription profiling by array
Homo sapiens
6
07/12/2017
-
56
-
RNA-IP of TAP-tagged ZC3H32 in bloodstream-form Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
6
07/12/2017
-
ENA
53
-
Transcription profiling by array of dermal and epidermal cells isolated from scar tissues of patients with keloid disease
transcription profiling by array
Homo sapiens
40
07/12/2017
91
-
ChIP-seq analysis of mouse T helper type 2 cells stimulated with CD3/28 and IL-4
ChIP-seq
Mus musculus
14
06/12/2017
-
ENA
67
-
Role of CCR2+ myeloid cells in pancreatic beta cell growth and regeneration
transcription profiling by array
Mus musculus
6
06/12/2017
73
-
Elucidation of the mechanism behind the potentiating activity of baicalin against Burkholderia cepacia complex biofilms
RNA-seq of coding RNA
Burkholderia cenocepacia
12
04/12/2017
-
ENA
102
-
Basal mRNA expression levels of single-cell derived FaDu clones with cisplatin-sensitive / resistant phenotype
transcription profiling by array
Homo sapiens
8
04/12/2017
-
69
-
Genomic profiling of the FaDu cell line and derived subclones using amplicon-based targeted sequencing
genotyping by high throughput sequencing
Homo sapiens
6
04/12/2017
-
ENA
61
-
RNA-seq to investigate miRNA expression in blood of East Sicilian sufferers of Klinefelter’s syndrome compared to healthy control donors
RNA-seq of non coding RNA
Homo sapiens
20
02/12/2017
-
ENA
153
-
Transcription profiling by array of wheat after inoculation with Puccinia triticina, Puccinia hordei or mock-inoculation to identify candidate genes for nonhost resistance against rust disease
transcription profiling by array
Triticum aestivum
36
02/12/2017
-
94
-
Transcription profiling by array of barley after inoculation with Puccinia hordei, Puccinia triticina or mock-inoculation to identify candidate genes for nonhost resistance against rust disease
transcription profiling by array
Hordeum vulgare
36
02/12/2017
-
71
-
Transcription profiling by array of wheat after inoculation with an adapted and a non-adapted Magnaporthe isolate or mock-inoculation to identify candidate genes for nonhost resistance against blast disease
transcription profiling by array
Triticum aestivum
36
02/12/2017
-
76
-
Transcription profiling by array of barley after inoculation with an adapted and a non-adapted Magnaporthe isolate or mock-inoculation to identify candidate genes for nonhost resistance against blast disease
transcription profiling by array
Hordeum vulgare
36
02/12/2017
-
63
-
Time-series RNA-seq experiment performed on nine melanoma cell lines treated with BRAF inhibitor vemurafenib
RNA-seq of coding RNA
Homo sapiens
33
02/12/2017
-
ENA
126
-
Transcription profiling by microarray of mouse B16F10 cells transduced with cDNAs encoding eGFP control, p19Arf, murine interferon-beta (IF-B) or the combination of p19Arf plus IF-B to study the modulated genes
transcription profiling by array
Mus musculus
12
02/12/2017
-
98
Whole transcriptomic analysis of mouse ATDC5 chondrocyte precursor cells under 25 MPa hydrostatic pressure for 0, 1 , 4 or 24h
transcription profiling by array
Mus musculus
8
02/12/2017
80
-
Using mitoribosomal profiling to investigate human mitochondrial translation
RNA-seq of coding RNA
Homo sapiens
5
01/12/2017
-
ENA
108
-
RNAseq of mouse presomitic mesoderm segments along the anteroposterior embryo axis
RNA-seq of coding RNA
Mus musculus
31
01/12/2017
ENA
85
-
Single-cell RNAseq of whole B6 mouse E8.25 embryos
RNA-seq of coding RNA from single cells
Mus musculus
456
01/12/2017
-
281
-
Whole genome transcriptional analysis of Alzheimer's disease patients compared with age-matched non-demented controls
transcription profiling by array
Homo sapiens
35
01/12/2017
319
Transcription profiling by array of effect of Copanlisib in Relapsed or Refractory Indolent Lymphoma patients
transcription profiling by array
Homo sapiens
78
01/12/2017
111
-
RNA-seq in a patient with idiopathic X-linked intellectual disability compared to healthy controls with normal mir222 expression
RNA-seq of coding RNA
Homo sapiens
4
01/12/2017
-
ENA
68
-
SNP arrays to confirm X-linkage in a family with idiopathic intellectual disability
genotyping by array
Homo sapiens
16
01/12/2017
-
47
-
ChIP-seq of Mediator subunits in Mediator mutants and wild type yeast
ChIP-seq
Saccharomyces cerevisiae
13
01/12/2017
-
ENA
67
-
Single-cell RNAseq of whole mouse E8.25 embryos
RNA-seq of coding RNA from single cells
Mus musculus
6
01/12/2017
-
171
-
Molecular subtyping of breast cancer by transcription profiling
transcription profiling by array
Homo sapiens
522
01/12/2017
-
267
-
ChIP-seq of the multiple antibiotic resistance repressor (MarR) protein of Enterotoxigenic Escherichia coli strain H10407
ChIP-seq
Escherichia coli
4
01/12/2017
-
ENA
67
-
Microarray analyses of microRNA expressions in comparison with immortal healthy mammary epithelial cells, breast cancer cells, and long-term-cultured breast cancer stem cells
microRNA profiling by array
Homo sapiens
10
01/12/2017
79
-
Transcription profiling of small heterodimer partner deficiency (SHP) knockout mice heart
transcription profiling by array
Mus musculus
12
01/12/2017
-
35
IMPC (international mouse phenotyping consortium) high throughput RNA seq of 1143 samples from 106 IMPC knockout lines
RNA-seq of coding RNA
Mus musculus
1143
01/12/2017
-
ENA
76
-
RNA-Seq of wild type yeast and several knockout strains in different chemically defined media
RNA-seq of coding RNA
Saccharomyces cerevisiae
23
01/12/2017
-
ENA
56
Opbp ChIP-seq in Drosophila melanogaster embryos
RNA-seq of coding RNA
Drosophila melanogaster
3
01/12/2017
-
ENA
27
-
WG-DASL expression profiling of formalin-fixed paraffin embedded primary breast tumours and matched lymph node metastases across four clinically relevant metastatic groups
transcription profiling by array
Homo sapiens
694
01/12/2017
112
-
Identifying crossover locations in Arabidopsis thaliana recq4a recq4b and HEI10 recq4a recq4b Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
384
30/11/2017
-
ENA
64
-
Transcription profiling of bovine mammary epithelial cells stimulated with Mycoplasma bovis against untreated controls
transcription profiling by array
Bos taurus
6
30/11/2017
32
-
Defining the molecular properties of the repairing epithelium during DSS induced colitis
transcription profiling by array
Mus musculus
6
30/11/2017
-
55
-
Defining the effect of extracellular matrix on cellular identity in mouse intestinal epithelial cells
transcription profiling by array
Mus musculus
6
30/11/2017
-
58
-
Expression analysis of foetal and adult intestinal epithelial cells cultured in vitro
transcription profiling by array
Mus musculus
6
30/11/2017
-
51
-
RNA-seq of fetal urinary bladder and lung tissue
RNA-seq of coding RNA
Homo sapiens
8
30/11/2017
-
, ENA
54
-
Differentiation of the human gonad: temporal expression of key genes in fetal ovary and testis
transcription profiling by array
Homo sapiens
46
29/11/2017
-
82
-
Carboxypeptidase E transmits its anti-migratory function in glioma cells via transcriptional regulation of cell architecture and motility regulating factors
transcription profiling by array
Homo sapiens
6
29/11/2017
-
65
-
Carboxypeptidase E transmits its anti-migratory function in glioma cells via transcriptional regulation of cell architecture and motility regulating factors
transcription profiling by array
Homo sapiens
6
29/11/2017
-
51
-
RNA-Seq of Drosophlia adult mid-gut with the induction of RNAi against the largest subunit of RNA polymerase III
RNA-seq of coding RNA
Drosophila melanogaster
6
29/11/2017
-
ENA
102
The expression profiles of 30 transcription factors in 17 inducible gain-of-function lines after activation of overexpression, including 5 time points
transcription profiling by array
Arabidopsis thaliana
380
28/11/2017
50
-
The expression profiles of 31 transcription factors in wild-type Col-0 plants upon mild osmotic stress, including 10 time points and different leaf tissues
transcription profiling by array
Arabidopsis thaliana
96
28/11/2017
61
-
Microarrays of mouse embryonic limb skeletal muscle at days E14.5 and E18.5 lacking the RYR1 or Cav1.1 Ca2+ channels
transcription profiling by array
Mus musculus
36
24/11/2017
-
113
RNA-seq of epiblast from mouse embryos at E4.5, E4.75 and E5.0
RNA-seq of coding RNA
Mus musculus
12
24/11/2017
ENA
150
-
Wild-type Lister 427 Bloodstream-form polysome profiles with ZC3H32 knock-down
RNA-seq of coding RNA
Trypanosoma brucei
18
24/11/2017
-
ENA
54
-
Identification of heterogeneous senescence-associated transcriptional programs
RNA-seq of coding RNA
Homo sapiens
78
22/11/2017
-
ENA
244
-
Microarray analysis of resting Nkrp1g+ NK cells versus resting Nkrp1g- NK cells from spleens of female BALB/c mice
transcription profiling by array
Mus musculus
6
21/11/2017
108
-
ChIPseq of Myocyte Enhancer Factor 2 in neonatal rat cardiomyocytes to distinguish MEF2 binding sites
ChIP-seq
Rattus norvegicus
4
21/11/2017
ENA
102
-
Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains
RNA-seq of coding RNA
Saccharomyces cerevisiae
64
21/11/2017
ENA
107
-
Single cell RNA-Seq of the murine non-myocyte cardiac cellulome
RNA-seq of coding RNA from single cells
Mus musculus
2
21/11/2017
-
374
-
RNA-seq of hypoxic and normoxic soybean roots (cultivars: Embrapa 45 and BR 4)
RNA-seq of coding RNA
Glycine max
12
21/11/2017
ENA
105
-
Diurnal gills transcriptome of the oyster Crassostrea gigas fed with non-harmful and harmful algae
RNA-seq of coding RNA
Crassostrea gigas
52
20/11/2017
-
ENA
94
-
Transcription profiling of primary monocytes in human donors suffering from rheumatoid arthritis compared to healthy controls
transcription profiling by array
Homo sapiens
5
19/11/2017
-
126
-
Hypoxia and Intrinsic Transcriptomic Subtyping of Soft Tissue Sarcoma
RNA-seq of coding RNA
Homo sapiens
40
17/11/2017
-
ENA
169
-
Single-cell RNA-Seq data of zebrafish blood cells
RNA-seq of coding RNA from single cells
Danio rerio
2015
17/11/2017
-
ENA
235
-
RNAseq analysis of microaerobic and aerobic cultures of Pseudomonas extremaustrali
RNA-seq of coding RNA
Pseudomonas extremaustralis
4
17/11/2017
-
ENA
102
-
Mating system manipulation and the evolution of sex-biased gene expression in Drosophila
RNA-seq of coding RNA
Drosophila pseudoobscura bogotana
96
17/11/2017
-
ENA
97
-
Transcription profiling by array of genetically engineered murine hepatoma Hepa8F5 cells with eight doxycylcline-inducible liver-enriched transcription factors to study transcription response under induced high liver function
transcription profiling by array
Mus musculus
5
15/11/2017
-
105
-
RNA-Seq analysis of Arabidopsis heterozygous mutant of gene (AT1G31870), which encodes a pre-mRNA-splicing factor of RES complex protein against the wild type (Col)
RNA-seq of coding RNA
Arabidopsis thaliana
4
11/11/2017
-
ENA
116
-
Transcriptome analysis of myeloid cells (neutrophils, macrophages and dendritic cells) isolated from the spinal cord of mice with experimental autoimmune encephalomyelitis (EAE)
transcription profiling by array
Mus musculus
8
10/11/2017
191
-
Terminus DNA loss in the Escherichia coli
DNA-seq
Escherichia coli str. K-12 substr. MG1655
15
10/11/2017
ENA
130
-
Transcriptional profiling of Th1, Th2, Th9, and Th17 T cell clones
RNA-seq of coding RNA
Homo sapiens
67
10/11/2017
-
ENA
262
-
Transcriptomic characterization of the human cell cycle in individual unsynchronized cells
RNA-seq of coding RNA from single cells
Homo sapiens
96
09/11/2017
ENA
276
-
Population transcriptomics in Daphnia galeata
RNA-seq of coding RNA
Daphnia galeata galeata
72
08/11/2017
-
ENA
122
-
RNA-seq of mouse alveolar macrophages sorted from CD11cCre/+ Tgfbr2fl/fl and control Tgfbr2fl/fl neonatal mice
RNA-seq of coding RNA
Mus musculus
8
08/11/2017
ENA
173
Transcription profiling by RNA-seq of murine hearts at different developmental stages and adult mice with ischemia/reperfusion injury
RNA-seq of coding RNA
Mus musculus
18
08/11/2017
-
ENA
127
DNA-seq of ELMSeq reporter cassette
DNA-seq
Mycoplasma pneumoniae
18
08/11/2017
-
ENA
95
-
Transcription profiling by high throughput sequencing of mouse embryonic stem cells following Trim24 and/or p53 knockdown
RNA-seq of coding RNA
Mus musculus
11
08/11/2017
-
ENA
462
Transcriptome regulating differentiation from the early human embryonic distal foregut
RNA-seq of coding RNA
Homo sapiens
6
07/11/2017
-
249
-
Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (RNE)
transcription profiling by array
Rattus norvegicus
48
03/11/2017
170
-
Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (Lung)
transcription profiling by array
Rattus norvegicus
48
03/11/2017
131
-
Toxicity of Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (Liver)
transcription profiling by array
Rattus norvegicus
32
03/11/2017
133
-
RNA-seq time course analysis of human and mouse T helper type 2 and type 0 cells
RNA-seq of coding RNA
Homo sapiens, Mus musculus
685
02/11/2017
-
ENA
73
-
RNA sequencing of T helper cell type 2 with CRISPR-mediated gene knockouts
RNA-seq of coding RNA
Mus musculus
576
02/11/2017
-
ENA
45
-
Transcription profiling by array of blood mononuclear cells of human volunteers subjected to heat stress
transcription profiling by array
Homo sapiens
45
01/11/2017
122
-
Determination by ChIP-chip of the binding sites of the developmental transcription regulator BldC in the genome of Streptomyces venezuelae ATCC 10712
ChIP-chip by array
Streptomyces venezuelae
4
01/11/2017
126
-
Microarray evaluation of in vitro cultured Sox9+ mouse lung progenitors isolated from E12.5 embryonic lung progenitors
transcription profiling by array
Mus musculus
11
01/11/2017
-
132
-
RNA-seq of in vitro cultured Sox9+ mouse lung progenitors cells from E12.5 embryos compared to freshly isolated cells and control adult lung epithelial cells
RNA-seq of coding RNA
Mus musculus
80
01/11/2017
-
ENA
187
-
Expression differences between zebrafish embryos lacking b3glct and wildtype sibs
transcription profiling by array
Danio rerio
12
01/11/2017
119
-
Transcription profiling by array of differential gene expression in chicken primary B cells infected ex vivo with attenuated and very virulent strains of infectious bursal disease virus (IBDV)
transcription profiling by array
Gallus gallus
9
01/11/2017
129
RNA-seq of pooled Arabidopsis thaliana inflorescences of miRNA function related HWS overexpressors, mutants and transgenic lines
RNA-seq of coding RNA
Arabidopsis thaliana
12
01/11/2017
-
ENA
144
-
RNA-seq of human colorectal cancer cell line COLO320DM treated with the secretome of irradiated or control cancer-associated fibroblasts for 6 or 48 hours
RNA-seq of coding RNA
Homo sapiens
96
01/11/2017
-
ENA
352
-
ChIP-Seq of the Streptomyces venezuelae regulator BldD and its D116A mutant
ChIP-seq
Streptomyces venezuelae
4
01/11/2017
ENA
107
-
Gene expression comparison of olfactory neurosphere-derived cells, fibroblasts and induced pluripotent stem cells derived from the same schizophrenic donors
transcription profiling by array
Homo sapiens
30
01/11/2017
-
178
-
RNASeq profiling of AZD8186-treated HCC70 xenografts
RNA-seq of coding RNA
Homo sapiens
6
01/11/2017
ENA
274
-
RNAseq of human Ewing, MSC, fibroblast cell lines - A side population of Ewing cells exhibits stem cell properties
RNA-seq of coding RNA
Homo sapiens
22
31/10/2017
ENA
252
-
DNA-seq of multiple myeloma patient with chromothripsis 18 and rapid progression into extramedullary relapse
DNA-seq
Homo sapiens
1
31/10/2017
ENA
170
-
Comparative genomic hybridization by array of multiple myeloma patient with rapid extramedullary relapse and chromothripsis 18
comparative genomic hybridization by array
Homo sapiens
1
31/10/2017
-
149
-
RNA-seq of coding RNA from human purified intestinal epithelial samples and organoids derived from paediatric gut, feotal gut and induced pluripotent stem cells
RNA-seq of coding RNA
Homo sapiens
50
31/10/2017
-
ENA
311
DNA methylation array of human purified intestinal epithelial samples and organoids from paediatric and foetal small and large intestine
methylation profiling by array
Homo sapiens
134
31/10/2017
-
233
-
Transcription profiling by array to investigate interferon gene expression changes in Macaca fascicularis upon infection with Simian immunodeficiency virus
transcription profiling by array
Macaca fascicularis
54
30/10/2017
-
103
-
Gene expression in cells encapsulated within different types of alginate microcapsules
transcription profiling by array
Mus musculus
7
30/10/2017
-
75
-
Microarray gene expression analysis for Escherichia coli O157:H7 (EHEC) and its luxS-deficient mutant strain in osmotic stress condition
transcription profiling by array
Escherichia coli O157:H7 str. EDL933
4
30/10/2017
-
124
-
Cortical transcriptome of female mice treated with vehicle or estrogen and subjected to hypoxia
RNA-seq of coding RNA
Mus musculus
8
30/10/2017
-
ENA
104
-
microRNA response of Galleria mellonella to Listeria monocytogenes infection: a powerful method to predict protein function in mammals exemplified by the autophagy adaptor optineurin
transcription profiling by array
Galleria mellonella, Galleria mellonella and Listeria monocytogenes
6
30/10/2017
78
-
Genome-wide identification of urinary cell-free microRNAs for non-invasive detection of bladder cancer
microRNA profiling by array
Homo sapiens
31
29/10/2017
-
243
-
RNA-sequencing of human cervical cancer HeLa cells treated with splicing inhibitors Sudemycin C1, Sudemycin K, Spliceostatin A or control DMSO
RNA-seq of coding RNA
Homo sapiens
24
29/10/2017
-
ENA
219
-
MicroRNA array profiling on human pluripotent stem cell-derived cardiomyocytes exposed to doxorubicin
microRNA profiling by array
Homo sapiens
51
28/10/2017
173
-
RNA-Sequencing of wild type and UCP1-null beige adipose tissue
RNA-seq of coding RNA
Mus musculus
12
28/10/2017
-
ENA
279
-
B1 C57BL6 wild type versus B1 IL-10 Knockout
transcription profiling by array
Mus musculus
6
28/10/2017
204
-
RNA-seq of the thermophilic biomass-degrading fungus Malbranchea cinnamomea FCH 10.5 when grown on glucose, wheat bran and beechwood xylan
RNA-seq of coding RNA
Malbranchea cinnamomea
30
27/10/2017
-
ENA
154
-
Transcription profiling by array of Streptomyces coelicolor A3(2) M145 vs a ∆sco2127 mutant in modified R5 media
transcription profiling by array
Streptomyces coelicolor A3(2)
4
27/10/2017
109
-
An application of a systems toxicology approach using a human organotypic small airway cultures for a comparative assessment between a candidate modified-risk tobacco product aerosol and cigarette smoke (mRNA data)
transcription profiling by array
Homo sapiens
214
26/10/2017
217
-
An application of a systems toxicology approach using a human organotypic small airway cultures for a comparative assessment between a candidate modified-risk tobacco product aerosol and cigarette smoke
microRNA profiling by array
Homo sapiens
215
26/10/2017
187
-
An RNASeq normal tissue atlas for mouse and rat
RNA-seq of coding RNA
Mus musculus, Rattus norvegicus
77
25/10/2017
ENA
783
-
Global gene expression analysis of OsmiRNA156 over expression switchgrass lines
transcription profiling by array
Panicum virgatum
20
25/10/2017
-
117
-
Gene expression profile of murine Bone marrow derived Dendritic cells stimulated with CD40L in absence or presence of Neural Precursor cell- conditioned medium
transcription profiling by array
Mus musculus
18
25/10/2017
108
-
A novel TetR-like transcriptional regulator is induced in acid-nitrosative stress and controls expression of an efflux pump in mycobacteria
transcription profiling by array
Mycobacterium smegmatis
8
24/10/2017
-
109
-
Transcription profiling by array of liver from diploid and triploid Atlantic salmon fed with marine or vegetable-based diet during early development
transcription profiling by array
Salmo salar
24
24/10/2017
-
169
-
High-throughput RNA sequencing of six ant transcriptomes
RNA-seq of coding RNA
Formica fusca, Lasius flavus, Lasius neglectus, Lasius niger, Myrmica scabrinodis
6
24/10/2017
-
ENA
114
-
Epigenomic changes associated with TGF-beta induced EMT in MDCK cells
ChIP-seq
Canis lupus familiaris
8
23/10/2017
ENA
125
-
RNA-seq of TGF-beta induced and histone variant H2A.Z-knocked-down canine MDCK cells in epithelial-to-mesenchymal transition (EMT)
RNA-seq of coding RNA
Canis lupus familiaris
9
23/10/2017
ENA
131
Transcription profiling by array of rat primary hepatic stellate cells with varying degrees of in vitro activation
transcription profiling by array
Rattus norvegicus
12
23/10/2017
-
109
-
Gene expression profiling of bronchoalveolar lavage cells during Aspergillus colonization of the lung allograft
transcription profiling by array
Homo sapiens
22
22/10/2017
219
Transcriptional profiling of articular cartilage in a porcine model of early post-traumatic osteoarthritis
RNA-seq of coding RNA
Sus scrofa
42
22/10/2017
-
ENA
194
DNA methylation profiling of intestinal epithelial cells from paediatric biopsies including Inflammatory Bowel disease and healthy controls
methylation profiling by array
Homo sapiens
215
20/10/2017
-
411
-
Gene expression response in peripheral blood cells of petroleum workers exposed to very low benzene levels
transcription profiling by array
Homo sapiens
45
19/10/2017
-
379
-
Paraneoplastic Cerebellar Degeneration (PCD) related ovarian cancer transcriptomic analysis
transcription profiling by array
Homo sapiens
12
18/10/2017
271
-
Microarray of Human astrocytes transduced with lentivirus expressing FGFR3-TACC3 treated with vehicle, FGFR3-TACC3 treated with the FGFR inhibitor PD173074 for 12h, FGFR3-TACC3-K508M treated with vehicle or empty vector treated with vehicle
transcription profiling by array
Homo sapiens
16
17/10/2017
-
289
-
Microarray transcription of murine lung and uterine group 2 innate lymphoid cells (ILC2s) cultured in vitro with or without 17beta-estradiol (estrogen, E2)
transcription profiling by array
Mus musculus
9
17/10/2017
155
-
Gene expression profiles new methotrexate resistant cell lines for the study of gestational trophoblastic neoplasia
transcription profiling by array
Homo sapiens
6
17/10/2017
155
-
P63-alpha specific ChIP-seq in E13.5/E14.5 mouse palatal shelves
ChIP-seq
Mus musculus
1
17/10/2017
ENA
123
-
Overexpression of c-Jun in mouse Schwann cells of uninjured nerves
RNA-seq of coding RNA
Mus musculus
12
16/10/2017
ENA
133
-
Gene expression after fetal intestinal obstruction on rat model
transcription profiling by array
Rattus norvegicus
20
16/10/2017
-
128
-
Extravillous trophoblast and endothelial cell crosstalk mediates leukocyte infiltration to the early remodelling decidual spiral arteriole wall
transcription profiling by array
Homo sapiens
2
16/10/2017
158
-
RNA sequencing of purified intestinal epithelial cells from paediatric biopsies including Inflammatory Bowel Disease and healthy controls
RNA-seq of coding RNA
Homo sapiens
79
16/10/2017
-
ENA
86
-
Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome
RNA-seq of coding RNA
Gallus gallus
48
14/10/2017
-
ENA
249
-
mRNA-seq based gene expression profiling of differentiating murine brown preadipocytes (IBA)
RNA-seq of coding RNA
Mus musculus
14
14/10/2017
-
ENA
133
-
Transcriptome profiling of short-term response to chilling stress in resistant and susceptible rice seedlings
RNA-seq of coding RNA
Oryza sativa Japonica Group
18
13/10/2017
-
ENA
190
Factor VII activating protease (FSAP) regulates the expression of inflammatory genes in vascular smooth muscle and endothelial cells
transcription profiling by array
Homo sapiens
12
13/10/2017
-
179
-
Effect of stress on the binding affinity of yeast eIF4F components to their target RNAs
RIP-seq, RNA-seq of coding RNA
Saccharomyces cerevisiae
54
11/10/2017
-
ENA
225
-
Transcription controls growth, cell kinetics and cholesterol supply to sustain ACTH responses
transcription profiling by array
Mus musculus
11
11/10/2017
157
RNA-Seq analysis of gene expression divergence in mammalian liver
RNA-seq of coding RNA
Balaenoptera borealis, Bos taurus, Callithrix jacchus, Canis familiaris, Cavia porcellus, Chlorocebus aethiops sabaeus, Daubentonia madagascariensis, Delphinus delphis, Felis catus, Heterocephalus glaber, Homo sapiens, Lagenorhynchus albirostris, Lemur catta, Macaca mulatta, Mesoplodon bidens, Microcebus murinus, Monodelphis domestica, Mustela putorius furo, Nycticebus coucang, Oryctolagus cuniculus, Otolemur garnettii, Rattus norvegicus, Sarcophilus harrisii, Sus scrofa, Tupaia belangeri
63
11/10/2017
ENA
352
-
Origins of MLL cancer stem cells govern leukemic self-renewal mediated by -catenin and Hoxa9
RNA-seq of coding RNA
Mus musculus
72
10/10/2017
-
ENA
301
-