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AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
Ampliseq transcriptomic array of REF seq. genes in Snai1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
Today
-
ENA
3
-
Ampliseq transcriptomic array of REF seq. genes in ZEB1 knock out triple negative breast cancer cells
RNA-seq of coding RNA
Homo sapiens
6
Today
-
ENA
-
-
ChIP-sequencing of Snai1 transcription factor in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
Today
-
ENA
-
-
ChIP-sequencing of ZEB1 in triple negative breast cancer cell line Hs578T
ChIP-seq
Homo sapiens
4
Today
-
ENA
3
-
Transcription profiling of human primary bone cells exposed to Staphylococcus aureus
transcription profiling by array
Homo sapiens
6
Yesterday
-
-
-
Jak kinase inhibition in mouse adipocyte progenitors
transcription profiling by array
Mus musculus
12
Yesterday
-
-
-
Microarray of ZEB1 Loss-of-Function in NCH421K cells
transcription profiling by array
Homo sapiens
6
Yesterday
1
-
ChIP-seq for Zeb1 in Human Neural Stem Cells and Glioblastoma Cancer Stem-like Cells
ChIP-seq
Homo sapiens
2
Yesterday
ENA
-
-
Transcription profiling by array to investigate gene expression changes caused by TNF-alpha induced fusion of human M13SV1-Cre breast epithelial cells and MDA-MB-435-pFDR1 breast cancer cells during normoxia and hypoxia
transcription profiling by array
Homo sapiens
8
23/04/2018
-
-
-
Transcriptional Profiling of Synovium in a Porcine Model of Early Post-traumatic Osteoarthritis
RNA-seq of coding RNA
Sus scrofa
42
21/04/2018
-
ENA
22
-
Biochemical Efficacy and Safety Trial of Vitamin D: dose-finding, placebo-controlled, randomised clinical trial assessing effects of high dose vitamin D
transcription profiling by array
Homo sapiens
574
21/04/2018
17
-
RNA sequencing of chicken limb distal mesenchyme cells to compare gene expression over time and in heterochronic grafted cells
RNA-seq of coding RNA
Gallus gallus
12
20/04/2018
ENA
36
-
Single cell RNA-seq of isolated human foetal L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA from single cells
Homo sapiens
295
20/04/2018
-
ENA
25
-
RNA-seq of isolated human foetal and hiPSC L/M-opsin cone photoreceptor populations labelled using the AAV2/9.pR2.1.GFP reporter
RNA-seq of coding RNA
Homo sapiens
95
20/04/2018
-
ENA
30
-
Morphine treatment leads to temporal modulation of the gut microbiome
DNA-seq
mouse gut metagenome
64
16/04/2018
-
ENA
42
-
Morphine treatment induces distinct changes in the gut microbiome at day 3 post treatment
DNA-seq
mouse gut metagenome
16
16/04/2018
-
ENA
24
-
Microarray analysis of human pediatric omental biopsies obtained from uremic patients, patients on peritoneal dialysis or healthy controls
transcription profiling by array
Homo sapiens
19
12/04/2018
-
54
-
Genome-wide profiling of H3K27ac (ChIP-seq) in IMR90 cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
49
-
Genome-wide profiling of CTCF binding (ChIP-seq) in A549 and U2OS cells
ChIP-seq
Homo sapiens
4
12/04/2018
ENA
44
-
Circularized chromosome conformation capture (4C-seq) in A549 and U2OS cells stably expressing rat GR
4C
Homo sapiens
4
12/04/2018
ENA
38
-
RNA Sequencing of Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
24
11/04/2018
ENA
80
-
Laser Capture Microdissection and RNA Sequencing Human Adamantinomatous Craniopharyngioma
RNA-seq of coding RNA
Homo sapiens
8
11/04/2018
ENA
58
-
IL-17A treatment of mouse primary colonic epithelial spheroids in 3 differentiation states
transcription profiling by array
Mus musculus
24
10/04/2018
-
46
-
Rat-CHTP1.2-Experiment
transcription profiling by array
Rattus norvegicus
79
10/04/2018
34
-
Systems toxicology assessment of CHTP1.2 [Lung Data]
transcription profiling by array
Rattus norvegicus
70
10/04/2018
35
-
Systems toxicology assessment of CHTP1.2 [Liver Data]
transcription profiling by array
Rattus norvegicus
83
10/04/2018
35
-
Changes in nitrogen availability lead to a reprogramming of pyruvate metabolism
transcription profiling by array
Hordeum vulgare
15
09/04/2018
-
-
RNA-seq of Streptomyces coelicolor and Streptomyces davawensis including a dodecin gene deletion variant in response to plumbagin treatment
RNA-seq of coding RNA
Streptomyces coelicolor A3(2), Streptomyces davaonensis JCM 4913
12
07/04/2018
-
ENA
52
-
RNA-seq to investigate how human-specific Notch2 paralogs expand cortical neurogenesis through regulation of Delta/Notch interactions
RNA-seq of coding RNA
Homo sapiens
11
06/04/2018
EGA
72
-
Transcription profiling by array of mouse primary hepatocytes from wild type and Xpa-/-p53+/- strains treated with carcinogens
transcription profiling by array
Mus musculus
114
06/04/2018
92
-
Transcriptome analysis of Huntington disease and control cerebral organoids at day 45 and 105 of differentiation
transcription profiling by array
Homo sapiens
15
05/04/2018
-
57
-
Single-molecule sequencing of maize and sorghum developmental tissues
RNA-seq of coding RNA
Sorghum bicolor, Zea mays
16
05/04/2018
-
ENA
35
-
RNA-sequencing of Sorghum tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Sorghum bicolor
165
05/04/2018
-
ENA
36
-
RNA-sequencing of maize tissues at different developmental stages (comparative transcriptome study)
RNA-seq of coding RNA
Zea mays
36
05/04/2018
-
ENA
27
-
Microarrays of SK-N-AS cells at 37 and 40 degrees C treated with TNFalpha
transcription profiling by array
Homo sapiens
48
05/04/2018
60
-
Whole transcriptome assay of human urinary bladder cancer tumor samples from the central part and invasive front of individual tumors
transcription profiling by array
Homo sapiens
16
04/04/2018
-
87
-
Transcription profiling by microarray of A549 cells and Ext1 knock out or wild type mouse embryonic fibroblast cells co-cultured as spheroids
transcription profiling by array
Homo sapiens
12
04/04/2018
-
58
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature (microarray data set 2)
transcription profiling by array
Solanum tuberosum
12
04/04/2018
-
31
-
A reversible light and genotype dependent acquired thermolerance response protects the potato plant from excessive temperature
transcription profiling by array
Solanum tuberosum
24
04/04/2018
-
29
-
RNA-seq of PCGF5 knockout and PCGF3/5 double knockout mouse embryonics stem cells bearing doxycycline-inducible Xist transgene on chromosome 16
RNA-seq of coding RNA
Mus musculus
16
04/04/2018
-
43
-
RNA-seq of PBMCs to investigate peptide vaccine immunotherapy biomarkers and response patterns in pediatric gliomas
RNA-seq of coding RNA
Homo sapiens
54
03/04/2018
-
ENA
56
-
Impaired spermatogenesis, muscle and erythrocyte function in U12 intron splicing-defective Zrsr1 mutant mice
RNA-seq of coding RNA
Mus musculus
18
03/04/2018
-
ENA
75
-
Microarray transcriptional analysis of leptin signaling knockdown and rescue in 72-hour post fertilization zebrafish
transcription profiling by array
Danio rerio
16
02/04/2018
52
-
Genomic copy number changes in breast cancers from patients exposed to ioinising radiation and non-exposed controls
comparative genomic hybridization by array
Homo sapiens
136
02/04/2018
-
63
-
Requirement for the Mediator kinase module for activation of super-enhancer associated genes in colon cancer cells
RNA-seq of coding RNA
Homo sapiens
24
02/04/2018
ENA
63
-
Compatible and incompatible infection of potato by nematode Globodera rostochiensis
RNA-seq of coding RNA
Solanum tuberosum
24
02/04/2018
-
ENA
36
-
Transcriptional profiling of pancreatic beta cells during maturation and with function-inactivating mutations
RNA-seq of coding RNA
Mus musculus
3
01/04/2018
-
ENA
35
-
3-D nasal cultures: Systems toxicological assessment of a candidate modified-risk tobacco product (nasal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
362
01/04/2018
37
-
Single-cell RNA-seq analysis of cutaneous wound healing in mouse
RNA-seq of coding RNA from single cells
Mus musculus
2534
01/04/2018
ENA
41
-
Systematic interaction profiling of human bromodomain-containing proteins reveals complex modes of binder recruitment for BET proteins
ChIP-seq
Homo sapiens
6
01/04/2018
ENA
43
-
Deciphering the transcriptional adaptation of Corynebacterium glutamicum in transition from aerobiosis via microaerobiosis to anaerobiosis via RNA-seq
RNA-seq of coding RNA
Corynebacterium glutamicum ATCC 13032
6
31/03/2018
-
ENA
27
-
Illumina HumanmethylationEPIC array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
25
-
Illumina Humanmethylation450k array analysis in early synovial fibroblasts of RA patients before diagnosis
methylation profiling by array
Homo sapiens
10
31/03/2018
-
20
-
RNAseq analysis of colon and ileum tissue from naive wild type, MR1-/- and IL-17A-/- mice
RNA-seq of coding RNA
Mus musculus
24
31/03/2018
ENA
32
-
RNA-Seq analysis of MCV-miR-M1 mimic-transfected HEK293 cells
RNA-seq of coding RNA
Homo sapiens
9
31/03/2018
-
ENA
38
-
Alterations in the gene expression pattern of the pituitary is consistent with the domesticated phenotype in chickens
transcription profiling by array
Gallus gallus
24
31/03/2018
-
26
-
RNA-seq of Heliconius melpomene adult male and female heads (eye+brain), antennae, mouthparts (labial palps+proboscis) and legs
RNA-seq of coding RNA
Heliconius melpomene
10
31/03/2018
-
ENA
27
-
RNA-seq of whole female drosophila wounded and/or infected with Pseudomonas entomophila
RNA-seq of coding RNA
Drosophila melanogaster
22
31/03/2018
-
ENA
21
-
p62/SQSTM1 iCLIP in Human Huh-7 cells
RNA-seq of coding RNA
Homo sapiens
10
31/03/2018
-
ENA
25
-
Whole exome sequencing of mouse ovarian cancer cell line ID8
genotyping by high throughput sequencing
Mus musculus
1
31/03/2018
ENA
237
-
Differentially expressed genes in KPC Cxcr2 KO vs KPC mouse PDAC
RNA-seq of coding RNA
Mus musculus
10
31/03/2018
ENA
226
-
microRNA profiling by array of activated or apoptotic (UV-B treated) T-lymphocytes and corresponding released microvesicles derived from normal healthy donors and systemic lupus erythematosus (SLE) patients
microRNA profiling by array
Homo sapiens
8
31/03/2018
26
-
Role of mevalonate pathway intermediates in anticancer effect of statins
transcription profiling by array
Homo sapiens
20
31/03/2018
20
-
RNA-seq of from Drosophila melanogaster tissues: gut; fatbody; brain; ovary or thorax, fed different diets or diet supplemented with rapamycin
RNA-seq of coding RNA
Drosophila melanogaster
44
30/03/2018
-
ENA
53
-
Pancreatic tissue of 9 week old mice with genotypes Ptf1a-Cre;LSL-KrasG12D and Ptf1a-Cre;LSL-KrasG12D;Ptpn11fl/fl
transcription profiling by array
Mus musculus
6
30/03/2018
31
-
RNA-seq of pericarp of purple-grain wheat Luozhen No.1 of 20 days (D20) shading treatment after pollination, against 20 DAP untreated controls
RNA-seq of coding RNA
Triticum aestivum
2
30/03/2018
ENA
30
-
RNA-seq of transplanted pluripotent stem cells-derived human intestinal organoids upon mechanical lengthening and human jejunum tissues
RNA-seq of coding RNA
Homo sapiens
11
30/03/2018
ENA
30
-
Metabolic maturation during muscle stem cell differentiation is achieved by miR-1/133a-mediated inhibition of the Dlk-Dio3 mega gene cluster
transcription profiling by array
Mus musculus
13
30/03/2018
-
23
-
Transcription profiling by microarray of isolated murine satellite cell differentiation in vitro
transcription profiling by array
Mus musculus
3
30/03/2018
-
31
-
A multi-omics approach to decipher the complexity of drug resistance in diffuse large B-cell lymphoma
RNA-seq of coding RNA
Homo sapiens
17
29/03/2018
-
ENA
18
-
RNA-seq of the diatom Skeletonema marinoi grown in the presence or absence of the copepod Calanus finmarchicus
RNA-seq of coding RNA
Skeletonema marinoi
12
29/03/2018
-
ENA
34
-
Transcriptional analysis using E13.5 mouse eyes of TGFb2/GDNF mutants compared to WT
transcription profiling by array
Mus musculus
6
29/03/2018
-
27
-
Identification of cis-eQTLs in six immune cell types CD4, CD8, CD14,CD15, CD19, PLA and ileal, colonic and rectal biopsies in 323 healthy European individuals (CEDAR cohort)
transcription profiling by array
Homo sapiens
2967
28/03/2018
-
-
-
Gene array of human mammary epithelial cell HMEC transfected with miR-106a-3p mimic against transfected control mimic
transcription profiling by array
Homo sapiens
6
28/03/2018
-
30
-
Whole genome microarray of bendiocarb-resistant An. gambiae mosquitoes from Uganda
transcription profiling by array
Anopheles gambiae S
40
28/03/2018
-
28
-
Transcription profiling by array of resting memory OT-I T_CXCR4 or OT-I T_Control cells isolated from the spleen 90 days following DC vaccination
transcription profiling by array
Mus musculus
6
28/03/2018
13
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by RNA-seq of CD8+ effector T cells isolated from the blood and skin of HSCT patients developing acute pattern GVHD
RNA-seq of coding RNA
Homo sapiens
15
28/03/2018
ENA
38
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+7 post-transplant (FTY720)
transcription profiling by array
Mus musculus
9
28/03/2018
13
-
Peripheral tissue instruction is the primary determinant of CD8+ T cell pathogenicity: transcription profiling by array of donor CD8+ effector T cells isolated from the secondary lymphoid organs, blood and GVHD-target organs at D+6 post-transplant (F>M model)
transcription profiling by array
Mus musculus
48
28/03/2018
14
-
RNA-seq of pericarp of Triticum aestivum Luozhen No.1, field study in Tai’an (China) at 15 and 20 days post pollination in response to shading treatment after pollination compared to untreated controls
RNA-seq of coding RNA
Triticum aestivum
8
26/03/2018
ENA
48
-
Small RNA-seq of quiescent, activated of differentiated mouse skeletal muscle stem cells
microRNA profiling by high throughput sequencing
Mus musculus
7
24/03/2018
-
ENA
38
-
RNAseq of peripheral blood mononuclear cells from related Hyperimmunoglobinemia D patients presenting with different phenotypes
RNA-seq of coding RNA
Homo sapiens
16
23/03/2018
-
ENA
46
-
Transcriptional response of Arabidopsis thaliana to exogenous application of pipecolic acid
RNA-seq of coding RNA
Arabidopsis thaliana
20
23/03/2018
-
ENA
23
-
A microarray meta-dataset of non-small cell lung cancer
transcription profiling by array
Homo sapiens
1118
23/03/2018
-
160
-
Targeting NAT10 enhances healthspan and lifespan in a mouse model of human accelerated aging syndrome
RNA-seq of coding RNA
Mus musculus
12
22/03/2018
-
ENA
45
-
Dam-specific RNA-seq
RNA-seq of coding RNA
Mycoplasma pneumoniae
5
22/03/2018
-
ENA
25
-
Affymetrix gene expression array (mouse 2.0) of sorted undifferentiated spermatogonia in inducible Miwi2 knock-out model
transcription profiling by array
Mus musculus
8
21/03/2018
-
44
-
Targeted sequencing of 49 primary medulloblastoma samples using Illumina TruSight Tumor 15 assay
DNA-seq
Homo sapiens
49
20/03/2018
-
ENA
83
-
Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure
RNA-seq of coding RNA
Cyclopterus lumpus
13
20/03/2018
ENA
66
-
Transcriptional profiling of E. coli K-12 and E. coli O157 (Sakai) following heat shock at 45 degree celsius
transcription profiling by array
Escherichia coli
6
20/03/2018
30
-
Genome-Wide Translation Profiling by Ribosome-Bound tRNA Capture
RNA-seq of non coding RNA
Saccharomyces cerevisiae
244
19/03/2018
-
ENA
57
-
ChIp-seq of HeLa cells with anti-glucocorticoid (GR) antibodies
ChIP-seq
Homo sapiens
8
19/03/2018
ENA
55
-
Microglia have a more extensive and divergent response to interferon-alpha compared with astrocytes
transcription profiling by array
Mus musculus
8
18/03/2018
28
-
DNA sequencing of Arabidopsis thaliana nrpd1-3 background with novel insertions of LTR retrotransposon ONSEN/COPIA78
DNA-seq
Arabidopsis thaliana
11
18/03/2018
-
ENA
22
-
DNA sequencing of Arabidopsis thaliana wild-type and nrpd1-3 under control or heat stress
DNA-seq
Arabidopsis thaliana
4
18/03/2018
-
ENA
24
-
Saccharomyces cerevisiae transcriptome analysis of conditional yjr141w-psd mutant compared to control strain
transcription profiling by array
Saccharomyces cerevisiae
12
18/03/2018
-
28
Identifying crossover locations in Arabidopsis thaliana wild-type Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
74
17/03/2018
-
ENA
17
-
RNA seq of fluid shear stress treated mouse renal epithelial cells
RNA-seq of coding RNA
Mus musculus
8
15/03/2018
ENA
18
-
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) xenografts in NSG or NSG-S mice (samples enriched in hCD45)
genotyping by high throughput sequencing
Homo sapiens, Mus musculus
26
15/03/2018
-
ENA
35
-
Role of mTOR signaling in mesenchamyl tissue response to inflammation in rheumatoid arthritis
transcription profiling by array
Homo sapiens
20
15/03/2018
-
46
-
Transcription profiling by array of liver from patients with varying stages of non-alcoholic fatty liver disease
transcription profiling by array
Homo sapiens
88
15/03/2018
108
-
RNAseq study (root and shoot) of Holcus lanatus ecotypes selected from two widely contrasting habitats, acid bog (pH 3.5) or limestone quarry spoil (pH 7.5)
RNA-seq of coding RNA
Holcus lanatus
39
15/03/2018
-
ENA
67
-
Agilent CGH + SNP array in 7 tumoral samples of Juvenile Myelomonocytic Leukemia (JMML)
comparative genomic hybridization by array
Homo sapiens
7
14/03/2018
-
22
-
Exomes of human leukemic JMML (Juvenile MyeloMonocytic Leukemia) cells and paired fibroblasts (germline controls) when available
genotyping by high throughput sequencing
Homo sapiens
28
14/03/2018
-
ENA
24
-
RNA-seq of sciatic nerve from mice expressing the transcription factor Miz1 with deletion of the POZ domain
RNA-seq of coding RNA
Mus musculus
8
14/03/2018
-
ENA
25
Neochloris oleoabundans under salt and nitrogen stress
RNA-seq of coding RNA
Neochloris oleoabundans
8
14/03/2018
-
ENA
27
-
Microarray analysis of eyes only from 23-hpf wild-type and pitx2M64* homozygous mutant zebrafish embryos
transcription profiling by array
Danio rerio
6
13/03/2018
-
19
-
Diurnal gene expression in Populus tremula x P. tremuloides wild type and lhy RNAi line 10
transcription profiling by array
Populus tremula x Populus tremuloides
26
13/03/2018
34
-
Whole-Genome Gene Expression Bead Array analysis of Toll-like receptor 2/8 stimulated human monocytes
transcription profiling by array
Homo sapiens
72
09/03/2018
-
17
-
Defective germline reprogramming rewires the spermatogonial transcriptome
Bisulfite-seq
Mus musculus
3
09/03/2018
ENA
11
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (microRNA data)
transcription profiling by array
Homo sapiens
80
08/03/2018
22
-
Transcription profiling by array to investigate the pattern of gene expression of B cells derived from Galectin-3 knockout mice
transcription profiling by array
Mus musculus
12
08/03/2018
-
32
-
Comparison of the Biological Effects of Long-Term Treatment of Human Bronchial Epithelial Cells with 3R4F Cigarette Smoke or THS2.2 Aerosol Total Particulate Matter (mRNA data)
transcription profiling by array
Homo sapiens
75
08/03/2018
22
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
262
07/03/2018
7
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (buccal epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
251
07/03/2018
18
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (gingival epithelial cells-microRNA dataset)
transcription profiling by array
Homo sapiens
192
07/03/2018
8
-
Assessment of the impact of aerosol from a potential modified risk tobacco product compared with cigarette smoke on human organotypic oral epithelial cultures under different exposure regimens (gingival epithelial cells-mRNA dataset)
transcription profiling by array
Homo sapiens
188
07/03/2018
9
-
CAGE on Drosophila mesodermal embryo samples
RNA-seq of coding RNA
Drosophila melanogaster
4
07/03/2018
-
ENA
7
-
Transcriptome analysis of budding yeast strains manipulated in RPL22A and RPL22B genes
RNA-seq of coding RNA
Saccharomyces cerevisiae
16
07/03/2018
-
ENA
8
-
Microarray analysis of 7 week control and nwasp knockout mouse backskin
transcription profiling by array
Mus musculus
2
06/03/2018
-
8
-
ChIP-Seq analysis of CCCTC-binding factor (CTCF) binding in rodents
ChIP-seq
Mus caroli, Mus musculus domesticus, Mus pahari
12
06/03/2018
ENA
12
-
RNA-seq analysis of Mus caroli and Mus pahari
RNA-seq of coding RNA
Mus caroli, Mus pahari
12
06/03/2018
-
ENA
5
-
Determination of effects of propionate on gene expression in human cerebromicrovascular endothelial cell line hCMEC/D3
transcription profiling by array
Homo sapiens
6
05/03/2018
-
14
-
Analyses of transcriptome sequences reveal multiple ancient large-scale duplication events in the ancestor of Sphagnopsida (Bryophyta)
RNA-seq of coding RNA
Eosphagnum inretortum, Flatbergium novo-caledoniae, Flatbergium sericeum, Sphagnum cribrosum
4
05/03/2018
-
ENA
9
-
RNA-seq data from the pilot study of the 'Personal Genome Project UK': PGP-UK10
RNA-seq of coding RNA
Homo sapiens
20
04/03/2018
ENA
66
-
Methylation arrays elucidate 5mC and 5hmC levels of human glioblastoma cell line LN229 upon restoration of TET3 expression
methylation profiling by array
Homo sapiens
8
03/03/2018
34
-
Analysis of the dose-dependent response of the ribosome-targeting antibiotic lincomycin on gene expression and its relationship to growth and secondary metabolism of S. coelicolor A3(2)
RNA-seq of coding RNA
Streptomyces coelicolor A3(2)
2
02/03/2018
-
ENA
22
-
Contribution of the Hog1 SAPK to nitrosative stress response in Candida albicans
RNA-seq of coding RNA
Candida albicans
24
02/03/2018
ENA
34
-
Systems Toxicology Assessment of the Biological Impact of a Candidate Modified Risk Tobacco Product on Human Organotypic Oral Epithelial Cultures (miRNA dataset)
transcription profiling by array
Homo sapiens
331
01/03/2018
45
-
Short Tandem Repeats - Targeted-Sequencing of human cells for Lineage tracing
genotyping by high throughput sequencing
Homo sapiens
210
01/03/2018
-
ENA
55
-
Genome-wide binding sites of NF90/ILF3 in K562 erythroleukemia cells
ChIP-seq
Homo sapiens
1
01/03/2018
ENA
38
-
Autoantibody profiling of sera from individuals with Systemic Lupus Erythematosus (SLE) by protein microarray
proteomic profiling by array
Homo sapiens
649
01/03/2018
-
61
-
Microarray transcriptional profiling of three-spined stickleback (Gasterosteus aculeatus) exposed to 10 different model toxicants and 26 mixtures of these toxicants
transcription profiling by array
Gasterosteus aculeatus
522
01/03/2018
-
29
-
Genome-wide copy number alteration analysis to identify genetic signature for development of distant metastases in Papillary Thyroid Cancer
comparative genomic hybridization by array
Homo sapiens
204
01/03/2018
-
44
-
RNAi knock down using siRNAs targeting PROX1 or §-catenin in human colon carcinoma cells
transcription profiling by tiling array
Homo sapiens 48 hours
10
01/03/2018
48
-
Microarray analysis of human umbilical vein endothelial cells (HUVECs) chronically irradiated with low dose-rate of ionizing radiation for one, three and six weeks
transcription profiling by array
Homo sapiens
27
28/02/2018
-
50
-
Transcriptomic analysis of F. graminearum disease response in near-isogenic resistant and susceptible hexaploid wheat lines
RNA-seq of coding RNA
Triticum aestivum
22
28/02/2018
-
ENA
50
-
RNA-Seq of Heliconius melpomene heads
RNA-seq of coding RNA
Heliconius melpomene
4
28/02/2018
-
ENA
30
-
microRNA profile of bovine monocyte-derived macrophages infected in vitro with Streptococcus agalactiae
RNA-seq of non coding RNA
Bos taurus
20
28/02/2018
-
ENA
33
-
Transcription profiling by array of osteoarthritic bone marrow lesions compared to normal bone
transcription profiling by array
Homo sapiens
24
28/02/2018
-
73
Gene expression profiling of 48 primary medulloblastoma samples
transcription profiling by array
Homo sapiens
48
27/02/2018
-
67
-
Genotyping by array of 123 IDH WT glioblastomas
genotyping by array
Homo sapiens
123
27/02/2018
-
46
-
Transcriptional profiling of primary human alveolar macrophages challenged with Streptococcus pneumoniae from patients with chronic obstructive pulmonary disease compared to healthy donors
transcription profiling by array
Homo sapiens
12
26/02/2018
84
-
Role of Fnr1 and Fnr3 in transcriptional regulation under oxygen limitation in Herbaspirillum seropedicae
ChIP-seq
Herbaspirillum seropedicae
4
26/02/2018
ENA
32
-
Transcriptional analysis of primary human monocyte-derived dendritic cells (moDCs) infected with different Zika virus strains and YF17D virus
transcription profiling by array
Homo sapiens
15
26/02/2018
-
45
-
RNA-Seq transcriptional analysis of Herbaspirillum seropedicae fnr1 and fnr3 deletion mutants in comparison with the wild type under two different oxygen regimes
RNA-seq of coding RNA
Herbaspirillum seropedicae
12
26/02/2018
ENA
36
-
Transcriptional profiling of 5T33MM cells treated in vivo with quisinostat, decitabine or the combination
transcription profiling by array
Mus musculus
16
26/02/2018
312
RNA-seq of Primary Human Hepatocytes (PHH) exposed to Valproic Acid (VPA) for 3 days daily and 3 days daily exposure followed by 3 days washout
RNA-seq of coding RNA
Homo sapiens
24
23/02/2018
-
ENA
109
MeDIP profiling by high-throughput sequencing of Primary Human Hepatocytes (PHH) exposed to Valproic Acid (VPA) for 3 days daily and 3 days daily exposure followed by 3 days washout
MeDIP-seq
Homo sapiens
16
23/02/2018
-
ENA
57
-
iCLIP of the RNA-binding protein ARPP21
CLIP-seq
Homo sapiens
4
23/02/2018
ENA
64
-
RNA-seq of leaf, root, and stem xylem from Western poplar (Populus trichocarpa) plants in response to drought, high salinity, heat and cold stress
RNA-seq of coding RNA
Populus trichocarpa
81
23/02/2018
-
ENA
135
Kinetics of L cells transcriptional profiling over the course of colonization in germ-free mice
transcription profiling by array
Mus musculus
17
22/02/2018
-
35
-
PRO-cap in Drosophila melanogaster embryo at 3-4h and 6-8h after egg laying
RNA-seq of coding RNA
Drosophila melanogaster
4
22/02/2018
-
ENA
34
-
Autoinflammation with enhanced type I interferon signaling due to DNASE2 mutations
RNA-seq of coding RNA
Homo sapiens
13
22/02/2018
-
ENA
106
-
L cells transcriptional profiling from germ-free and conventional mice
transcription profiling by array
Mus musculus
24
21/02/2018
-
64
-
RNA-seq of enriched barley stomatal complexes versus total leaves
RNA-seq of coding RNA
Hordeum vulgare
3
21/02/2018
-
ENA
45
-
Gene expression profiling of peripheral blood mononuclear cells (PBMCs) 8 hours after exposure to 1 Gy of carbon or iron ions
transcription profiling by array
Homo sapiens
16
21/02/2018
-
83
Senataxin resolves R-loops forming at DNA double strand breaks to prevent translocations
ChIP-seq, RNA-seq of coding RNA
Homo sapiens
7
20/02/2018
-
ENA
70
-
RNA-seq of Nostoc sp. PCC 7120 (Anabaena sp. PCC 7120) wild-type strain, hetZ mutant and hetP mutant
RNA-seq of coding RNA
Nostoc sp. PCC 7120
6
19/02/2018
ENA
53
-
Transcription profiling of newly generated and mature mouse splenic plasma cells after immunization with sheep red blood cells
transcription profiling by array
Mus musculus
7
19/02/2018
-
31
-
Transcription profiling by RNA-seq of murine colon tumours after in situ depletion of Nuak1
RNA-seq of coding RNA
Mus musculus
12
19/02/2018
-
ENA
46
-
Comparison of the transcriptomic impact of NRF2 depletion with that of NUAK1 depletion in SW480 colorectal cancer cells
RNA-seq of coding RNA
Homo sapiens
12
19/02/2018
-
ENA
58
-
Meythlation profiling by array to investigate the effect of hyperoxia on DNA methylation in mouse lung tissue
methylation profiling by array
Mus musculus
24
17/02/2018
-
46
-
RNA-seq of total lymph node cells from inducible ll7 gene deletion mice
RNA-seq of coding RNA
Mus musculus
6
16/02/2018
ENA
90
-
DNA Methylation analysis of human tissues from obese patients
methylation profiling by array
Homo sapiens
204
15/02/2018
-
75
-
Expression profiling of human tissues from obese patients
transcription profiling by array
Homo sapiens
65
15/02/2018
-
68
-
RNA-Seq of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC)
RNA-seq of coding RNA
Mus musculus
12
12/02/2018
-
ENA
78
-
Microarray profiling of YTHDF2 deficient mouse oocytes
transcription profiling by array
Mus musculus
10
12/02/2018
-
34
-
Microarray transcriptome profiling of peripheral T-cell lymphomas in two groups differentiated by Twist and Slug protein expression
transcription profiling by array
Homo sapiens
12
11/02/2018
142
-
Sequence Requirements for Cascade Function in a Type I-E CRISPR System: RNA-Seq
RNA-seq of coding RNA
Escherichia coli str. K-12 substr. MG1655
4
10/02/2018
-
ENA
55
-
Gene expression comparison of MCF10A cells with and without extra centrosomes through overexpression of PLK4
transcription profiling by array
Homo sapiens
12
10/02/2018
-
456
-
Organotypic human bronchial epithelial cultures (MucilAir) exposed to mainstream aerosols from the 3R4F cigarette and a novel tobacco vapor product
transcription profiling by array
Homo sapiens
27
09/02/2018
-
68
-
MicroRNA profiling by array of oral squamous cell cancer (OSCC) surgical margins defined by narrow band imaging
microRNA profiling by array
Homo sapiens
44
09/02/2018
61
-
Draft genome sequencing of Lactuca. sativa cv. Tizian
DNA-seq
Lactuca sativa
4
09/02/2018
-
ENA
46
-
Stabilized biological production by product addiction
DNA-seq
Escherichia coli K-12
24
09/02/2018
-
ENA
58
-
RNA-seq as a global measure of the similarity between human pluripotent stem cell and fetal liver derived B cell hierarchies
RNA-seq of coding RNA
Homo sapiens
47
08/02/2018
ENA
89
-
microRNAs as predictive biomarkers of response to sunitinib or pazopanib in patients with metastatic renal cell carcinoma
microRNA profiling by array
Homo sapiens
60
08/02/2018
-
83
-
RNA-seq of Plasmodium falciparum for comparative analysis of clinical isolates with severe and uncomplicated malaria
RNA-seq of coding RNA
Plasmodium falciparum
44
08/02/2018
-
ENA
52
-
Bulk RNA Barcoding and sequencing (BRB-seq) protocol for RNA-seq of human pre-adipocytes and differentiated adipocytes
RNA-seq of coding RNA
Homo sapiens
34
06/02/2018
-
ENA
63
-
Transcriptome analysis of interactions of genes, mtap1 and sgl1, involved in compound inflorescence development in Medicago truncatula
transcription profiling by array
Medicago truncatula
12
06/02/2018
-
39
-
RNA-seq of Pseudomonas aeruginosa PAO1 wild-type and ersA (sRNA) knock-out mutant
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
4
05/02/2018
-
ENA
59
-
Gene expression profiling across ontogenetic stages in wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation
RNA-seq of coding RNA
Leptidea sinapis
60
02/02/2018
-
ENA
93
-
Next generation sequencing for patients with hypomyelinating leukodystrophies
genotyping by high throughput sequencing
Homo sapiens
7
02/02/2018
-
ENA
68
-
Genome-wide profiling reveals cancer-related genes have switched alternative polyadenylation sites in colorectal cancer
RNA-seq of coding RNA
Homo sapiens
6
02/02/2018
-
ENA
113
-
RNA-seq time course of cardiac repair in mouse in response to LAD ligation compared to sham and non-injured controls
RNA-seq of coding RNA
Mus musculus
78
02/02/2018
-
ENA
75
-
Gene expression changes between primary mesothelioma tumour cells and commercially available cell lines, compared to normal primary mesothelial cells
transcription profiling by array
Homo sapiens
38
01/02/2018
-
90
-
RNA-seq analysis of the overexpression of the Fil1 transcription factor in S. pombe
RNA-seq of coding RNA
Schizosaccharomyces pombe
12
01/02/2018
-
ENA
60
-
Next generation sequencing for patients with hypomyelinating leukodystrophies
genotyping by high throughput sequencing
Homo sapiens
15
01/02/2018
-
ENA
73
-
Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation
RNA-seq of coding RNA
Schizosaccharomyces pombe
37
01/02/2018
-
ENA
60
-
RNAseq of human epithelial lung carcinoma cell line A549 exposed to ceria, silver or zinc ions, micron-sized particles or nanoparticles
RNA-seq of coding RNA
Homo sapiens
152
01/02/2018
-
ENA
96
-
Phenotypic analysis of the fil1 transcription factor from S. pombe
RNA-seq of coding RNA
Schizosaccharomyces pombe
16
01/02/2018
-
ENA
72
-
ChIP-seq analysis of the Fil1 transcription factor from S. pombe
ChIP-seq
Schizosaccharomyces pombe
6
01/02/2018
-
ENA
84
-
RNA-seq of SOX2 positive pituitary cells with and without activation of beta-catenin
RNA-seq of coding RNA
Mus musculus
6
01/02/2018
-
ENA
53
-
RNA-seq of ovarian cancer ascites cells
RNA-seq of coding RNA
Homo sapiens
24
01/02/2018
-
ENA
113
-
Transcriptome analysis of WT and gp91-/- mice infected with Salmonella enteric server Typhimurium
transcription profiling by array
Mus musculus
38
01/02/2018
-
39
-
Single-cell RNA-seq of motor neuron progenitors differentiated from mouse embryonic stem cell line HM1 by treatment with RA and SAG
RNA-seq of coding RNA from single cells
Mus musculus
202
01/02/2018
-
ENA
105
-
Transcription profiling by array of murine Ba/F3-ITD cells treated with DMSO or sorafenib
transcription profiling by array
Mus musculus
12
01/02/2018
-
62
Transcription profiling by array of wild type and Hek2 deletion mutants of S. cerevisiae to investigate a SUMO dependent feedback loop which senses and controls nuclear pore subunit biogenesis
transcription profiling by array
Saccharomyces cerevisiae
2
31/01/2018
-
48
-
RNA-Seq of canine transmissible venereal tumors (CTVT)
RNA-seq of coding RNA
Canis lupus familiaris
12
31/01/2018
-
ENA
96
-
Systemic gene expression profiles in patients with ventilator-associated pneumonia
transcription profiling by array
Homo sapiens
56
31/01/2018
83
-
Methylome of 9 canine transmissible veneral tumour (CTVT) samples
MeDIP-seq
Canis lupus familiaris
9
31/01/2018
-
ENA
51
-
RNA-Seq of canine transmissible venereal tumors
RNA-seq of coding RNA
Canis lupus familiaris
6
31/01/2018
-
ENA
81
-
Transcription profiling of Arabidopsis VCS-amiRNA plants under a dehydration stress condition
transcription profiling by array
Arabidopsis thaliana
4
31/01/2018
-
41
-
Transcription profiling of Arabidopsis wild-type plants under a dehydration condition
transcription profiling by array
Arabidopsis thaliana
4
31/01/2018
-
118
-
RNA-seq analysis of mouse (C57/B6) small intestinal tissue after Porcupine Inhibitor treatment or vehicle control
RNA-seq of coding RNA
Mus musculus
20
31/01/2018
ENA
65
Gene expression analysis of breast adenocarninoma cell line T47D treated with particulate matter PM2.5 sampled near the municipal solid waste incineration plant of Bologna city
transcription profiling by array
Homo sapiens
23
31/01/2018
-
48
-
Single-cell RNAseq of Human T lymphocyte derived from H7N9 infected patients
RNA-seq of coding RNA from single cells
Homo sapiens
476
30/01/2018
-
ENA
144
-
Transcription profiling by array of ESC derived hepatocytes treated with either vehicle or high energy substrates to model non alcoholic fatty liver disease
transcription profiling by array
Homo sapiens
12
30/01/2018
-
52
-
ChIP-on-chip of Sgs1 and gammaH2A and DNA:RNA hybrids in wild type and SGS1 mutants
ChIP-chip by tiling array
Saccharomyces cerevisiae
13
30/01/2018
39
-
Trancriptomic profiling of HCT116 colon cancer cells with or without PBRM1 knock-down by RNAi
RNA-seq of coding RNA
Homo sapiens
6
30/01/2018
ENA
63
-
Tissue-specific DNase-seq during Drosophila melanogaster embryogenesis
DNA-seq
Drosophila melanogaster
2
29/01/2018
-
ENA
99
-
Assessing genome instability in Bloom syndrome
MNase-seq, RNA-seq of coding RNA
Homo sapiens, Mus musculus
3934
26/01/2018
-
ENA
106
-
Genotyping data for seven patients from three unrelated, consanguineous multiplex families that presented with combined immunodeficiency, and were found to harbour mutations in CARMIL2
genotyping by array
Homo sapiens
14
25/01/2018
15
-
CD1d-dependent immune suppression mediated by regulatory B cells through modulations of iNKT cells
RNA-seq of coding RNA
Mus musculus
16
25/01/2018
-
ENA
123
-
NUDT21 Negatively Regulates PSMB2 and CXXC5 by Alternative Polyadenylation and Contributes to Hepatocellular Carcinoma Suppression
RNA-seq of coding RNA
Homo sapiens
4
25/01/2018
-
ENA
73
-
RNA-seq of whole blood samples from patients with visceral leishmaniasis
RNA-seq of coding RNA
Homo sapiens
17
25/01/2018
-
ENA
83
-
Expression quantitative trait locus analysis of chicken liver
transcription profiling by array
Gallus gallus
72
25/01/2018
-
38
-
RNAseq analysis of human peritoneal dialysis effluent cells treated with or without alanyl-glutamine supplemented peritoneal dialysis fluid in a randomized controlled cross-over pilot study
RNA-seq of coding RNA
Homo sapiens
11
25/01/2018
-
ENA
45
-
miRNA analysis of human peritoneal dialysis effluent cells treated with or without alanyl-glutamine supplemented peritoneal dialysis fluid in a randomized controlled cross-over pilot study
microRNA profiling by array
Homo sapiens
10
25/01/2018
-
40
-
ChIP-seq of components of the PRC1.6 complex in mouse embryonic stem cells
ChIP-seq
Mus musculus
4
24/01/2018
-
ENA
86
-
ChIP-seq of components of the PRC1.6 complex in HEK293 cells where single components were deleted
ChIP-seq
Homo sapiens
22
24/01/2018
-
ENA
70
-
RNA-seq of gene expression changes in HEK293 cells after deletion of PRC1.6 complex component MGA
RNA-seq of coding RNA
Homo sapiens
6
24/01/2018
-
ENA
60
-
ChIP-seq of CD117-positive primary hematopoietic precursor cell from Meer mice that carry a leukemogenic knock-in of an inducible ENL-ER portion into the mouse Mll locus
ChIP-seq
Mus musculus
7
23/01/2018
-
ENA
42
-
Transcription profiling by array of human hepatocarcinoma SMMC-7721 cells treated with a new compound IMB5043 against untreated controls
transcription profiling by array
Homo sapiens
2
22/01/2018
-
73
-
Microarray gene expression profiling of microglia from control and C6 glioma tumor-bearing brain hemisphere in the rat
transcription profiling by array
Rattus norvegicus
8
22/01/2018
-
81
-
RNA-Seq analysis of an industry isolated Pseudomonas aeruginosa strain following exposure to preservatives and product formulations
RNA-seq of coding RNA
Pseudomonas aeruginosa
32
20/01/2018
-
ENA
101
-
Transcriptional profiling by array of chronic myeloid leukaemia (CML) stem/progenitor cells (CD34+38-) treated with tyrosine kinase inhibitors (imatinib, dasatinib and nilotinib) at different time points (8 hours and 7 days) against untreated controls
transcription profiling by array
Homo sapiens
49
20/01/2018
-
393
-
Time-lapse Deep-seq of E. coli Metabolite Production Pathway
DNA-seq
Escherichia coli K-12
26
19/01/2018
-
ENA
94
-
Genome-wide characterisation of DNA methylation in an invasive Lepidopteran pest, the cotton bollworm Helicoverpa armigera
methylation profiling by high throughput sequencing
Helicoverpa armigera
1
19/01/2018
-
ENA
59
-
RNA-seq transcriptome profiling of the psychrophilic diatom Fragilariopsis cylindrus under six treatments simulating conditions within sea ice
RNA-seq of coding RNA
Fragilariopsis cylindrus
15
18/01/2018
-
ENA
77
-
Ribosome profiling of the retrovirus murine leukemia virus in Rat2 cells
RNA-seq of coding RNA
Rattus norvegicus
9
17/01/2018
-
ENA
84
-
Transcription profiling by array of oral squamous cell cancer (OSCC) surgical margins defined by narrow band imaging
transcription profiling by array
Homo sapiens
49
17/01/2018
98
RNA-seq of human normal mammary gland cells FACS sorted into three populations: ALDH+, ALDH-CD44+CD24-, and ALDH-CD44-CD24+
RNA-seq of coding RNA
Homo sapiens
9
17/01/2018
-
ENA
93
-
microRNA profiling by array of paired samples tumor tissue/normal adjacent tissue from colon cancer patients
microRNA profiling by array
Homo sapiens
10
17/01/2018
-
144
-
MicroRNA analysis in HPV-positive and HPV-negative cervical cancer cell lines
microRNA profiling by array
Homo sapiens
6
16/01/2018
-
80
-
MicroRNA expression profile in human foreskin keratinocytes (HFKs) transduced with retroviral vectors carrying E6 and E7 genes of either HPV6 or HPV16 and with the LXSN empty vector
microRNA profiling by array
Homo sapiens
23
16/01/2018
-
62
-
Transcriptional profiling of triple-negative breast cancer cell lines treated with OTX015
transcription profiling by array
Homo sapiens
11
16/01/2018
100
-
Effect of HE4 overexpression or treatment with recombinant HE4 protein on OVCAR8 ovarian cancer cells
transcription profiling by array
Homo sapiens
12
15/01/2018
129
-
Transcription profiling by array of U-2987-MG glioma derived cell line to investigate the effect of Snail1 overexpression compared to control
transcription profiling by array
Homo sapiens
8
15/01/2018
-
97
-
RNA-seq of platelets derived from blood of healthy human donors in response to physiological stimuli collagen or Thrombin Receptor Activating Peptide compared to untreated controls
RNA-seq of coding RNA
Homo sapiens
9
15/01/2018
-
ENA
452
-
Whole transcriptome profiling by microarray of monocytes stimulated with LPS and treated with trabectedin, lurbinectedin or doxorubicin
transcription profiling by array
Homo sapiens
16
15/01/2018
62
Transcription profiling by array of carcinoma-stem-like cells (CSC) extracted from a primary ovarian cancer cell line
transcription profiling by array
Homo sapiens
6
15/01/2018
56
-
Comparative transcriptomics of Rhizobium mesoamericanum STM3625, Cupriavidus taiwanensis LMG19424 and Burkholderia phymatum STM815 when induced by root exudates of Mimosa pudica
RNA-seq of coding RNA
Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG 19424, Rhizobium mesoamericanum STM3625
18
15/01/2018
-
ENA
41
-
microRNA expression profiling of CML and normal quiescent cells
microRNA profiling by array
Homo sapiens
10
12/01/2018
-
76
-
Immune transcriptional profiling in end-stage renal disease
transcription profiling by array
Homo sapiens
480
11/01/2018
149
-
Dry seed transcriptome differences associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
transcription profiling by array
Arabidopsis thaliana
12
10/01/2018
80
-
Fibroblasts potentiate melanoma cells in vitro invasivity induced by UV-irradiated keratinocytes - transcription profiling
transcription profiling by array
Homo sapiens
10
10/01/2018
-
55
-
Targeted next generation sequencing of cfDNA from lung cancer patients enrolled in the GALAXY-1 trial (NCT01348126)
DNA-seq
Homo sapiens
306
10/01/2018
-
ENA
158
-
Transgenic expression of BEN, a member of TFII-I family, in various murine adipose tissues
RNA-seq of coding RNA
Mus musculus
16
10/01/2018
-
ENA
80
-
Dual IRE1 RNase functions dictate glioblastoma development
transcription profiling by array
Homo sapiens
119
09/01/2018
-
62
-