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Various evolutionary trajectories lead to loss of activity of tobramycin-potentiating compounds in Burkholderia cenocepacia biofilms
DNA-seq
Burkholderia cenocepacia
12
Yesterday
-
ENA
12
-
Transcriptome analysis of HeLa cells upon deprivation of methionine and cysteine (Met/Cys)
RNA-seq of coding RNA
Homo sapiens
8
21/07/2018
-
ENA
16
-
Effect of the IRE1a-XBP1 pathway inhibition during T helper 2 differentiation
RNA-seq of coding RNA
Mus musculus
8
20/07/2018
-
ENA
-
-
Transcription profiling by array of B lymphoblasts derived from either control donors or patients with loss of function mutations in TTC7A
transcription profiling by array
Homo sapiens
10
19/07/2018
-
-
-
Klhl6 deficiency impairs transitional B cell survival and differentiation
transcription profiling by array
Mus musculus
12
17/07/2018
-
2
-
Single-cell RNA-seq of of human dermal fibroblasts (supplementary - different stimulation conditions of dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
1920
16/07/2018
ENA
-
-
Single-cell RNA-seq of dermal fibroblasts (5 human individuals - IFNB stimulation)
RNA-seq of coding RNA from single cells
Homo sapiens
681
16/07/2018
ENA
-
-
Single-cell RNA-seq of of dermal fibroblasts (supplementary - human fibroblasts stimulation with dsRNA)
RNA-seq of coding RNA from single cells
Homo sapiens
590
16/07/2018
ENA
-
-
Bulk RNA-seq of of human dermal fibroblasts from up to 66 individuals (supplementary)
RNA-seq of coding RNA
Homo sapiens
168
16/07/2018
ENA
-
-
Single-cell RNA-seq of of bone marrow derived mononuclear phagocytes derived from mouse; rat; rabbit or pig
RNA-seq of coding RNA from single cells
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
68
16/07/2018
ENA
-
-
Transcriptome of Trypanosome brucei after PUF2 Knock-down - polysome fractions
RNA-seq of coding RNA
Trypanosoma brucei
3
16/07/2018
-
ENA
-
-
RNA-seq of mouse EL4 cells overexpressing Israa gene product in comparison with Mock-transfected control cells
RNA-seq of coding RNA
Mus musculus
2
15/07/2018
-
ENA
-
-
Transcriptomic effects of long-term pantethine treatment in the mouse Alzheimer's disease 5XFAD model
transcription profiling by array
Mus musculus
12
15/07/2018
-
-
-
RNA-seq of human neurons derived from H9 embryonic stem cell lines treated with BDNF, TrkB agonist ZEB 85 or NT4 against untreated controls
RNA-seq of coding RNA
Homo sapiens
192
13/07/2018
ENA
-
-
RNA-seq of mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
RNA-seq of coding RNA
Mus musculus
19
13/07/2018
-
ENA
-
-
DNA-seq of mitochondrial DNA from mouse heart that is both heart SOD2 knockout and deficient for mitochondrial DNA repair
DNA-seq
Mus musculus
43
13/07/2018
-
ENA
-
-
DNA-seq of mitochondrial DNA from liver of OGG1 and MUTYH deficient mice that have been bred for five consecutive generations
DNA-seq
Mus musculus
30
13/07/2018
-
ENA
-
-
Binding of the Zika virus genome to endogenous human transcripts
RNA-seq of non coding RNA
Homo sapiens
18
13/07/2018
-
ENA
-
-
Whole-exome sequencing of genomic DNA extracted from patient-derived melanoma cell lines grown in vitro
DNA-seq
Homo sapiens
8
12/07/2018
ENA
-
-
miRNA profiling array results in serum RNA (healthy volunteers and breast tumor patients)
microRNA profiling by array
Homo sapiens
7
12/07/2018
-
-
-
Promoter capture and whole genome in situ Hi-C of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
Hi-C
Homo sapiens
12
11/07/2018
ENA
-
-
Gene expression profiling by RNA-seq of human iPSC and iPSC-derived cardiomyocytes from an Yoruban individual (NA19101)
RNA-seq of coding RNA
Homo sapiens
6
11/07/2018
ENA
-
-
RNA libraries of sorted CD8+ memory T cells from the spleen and RNA libraries of sorted IELs from the small intestine of C57BL/6J mice
RNA-seq of coding RNA
Mus musculus
6
10/07/2018
-
ENA
-
-
iPSC-derived macrophages effectively treat pulmonary alveolar proteinosis in Csf2rb-deficient mice
RNA-seq of coding RNA
Mus musculus
10
10/07/2018
ENA
8
-
RNA-seq of human skin lesions diagnosed as actinic keratosis, intraepidermal carcinoma or squamous cell carcinoma
RNA-seq of coding RNA
Homo sapiens
25
09/07/2018
ENA
11
-
Massively parallel single-cell RNA-sequencing of K14E7 transgenic and wildype C57BL/6 mice
RNA-seq of coding RNA from single cells
Mus musculus
4
09/07/2018
ENA
9
-
RNA-seq of metabolically labelled RNA by 4-thiouracil from mouse tissues
RNA-seq of coding RNA
Mus musculus
18
09/07/2018
-
ENA
4
-
Single cell sequencing of lung carcinoma
RNA-seq of coding RNA from single cells
Homo sapiens
19
09/07/2018
-
24
-
SNP array Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
66
09/07/2018
-
7
-
SCRB-seq comparison with TruSeq on bulk RNA-seq human LCL (DMSO) and BAY treated LCL (BAY)
RNA-seq of coding RNA
Homo sapiens
12
07/07/2018
-
ENA
16
-
Single-cell RNA-seq of ex vivo CD45-negative skin resident-cells using microfluidic droplet capture
RNA-seq of coding RNA
Homo sapiens
8
06/07/2018
-
10
-
Bulk RNA-seq of of bone marrow derived mononuclear phagocytes
RNA-seq of coding RNA
Mus musculus, Oryctolagus cuniculus, Rattus norvegicus, Sus scrofa
73
06/07/2018
-
ENA
15
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
240
06/07/2018
ENA
13
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (stimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2130
06/07/2018
ENA
12
-
Single-cell RNA-seq of of dermal fibroblasts using microfluidic droplet capture (unstimulated cells)
RNA-seq of coding RNA from single cells
Homo sapiens
2553
06/07/2018
ENA
13
-
Single-cell RNA-seq of dermal fibroblasts stimulated with dsRNA (poly I:C) in a time course of 0, 2, 4 and 8 hours
RNA-seq of coding RNA from single cells
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
728
06/07/2018
ENA
17
-
Bulk RNA-seq of dermal fibroblasts after stimulation with interferon or dsRNA (poly I:C)
RNA-seq of coding RNA
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
79
06/07/2018
ENA
13
-
ChIP-seq of H3K4me3 and H3K27ac of dermal fibroblasts with and without dsRNA (poly I:C) stimulation
ChIP-seq
Homo sapiens, Macaca mulatta, Mus musculus, Rattus norvegicus
52
06/07/2018
ENA
15
-
The effect of high cholesterol diet on expression level of myocardial microRNAs
microRNA profiling by array
Rattus norvegicus
6
06/07/2018
-
9
-
ChIP-Seq of BCL11A and SOX2 in lung squamous cell carcinoma (LUSC) LK-2 cell line with or without BCL11A knockdown
ChIP-seq
Homo sapiens
5
05/07/2018
ENA
21
-
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice
transcription profiling by array
Mus musculus
12
05/07/2018
-
15
-
RNA-seq experiment of isolated endothelial and microglial cells from hippocampal DG and CA1 regions under control and VEGF overexpression conditions
RNA-seq of coding RNA
Mus musculus
16
04/07/2018
ENA
17
-
Transcriptional response to Rosiglitazone in adipocyte progenitors isolated from WT and Cited4-KO scWAT
transcription profiling by array
Mus musculus
12
04/07/2018
-
17
-
Transcriptomic profiling of human neuromesodermal-like cells and spinal cord progenitors derived in vitro from H9 ES cell line
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
15
-
RNA-seq of primary human M2-polarized macrophages cultured in either high-concentration or low-concentration type I collagen
RNA-seq of coding RNA
Homo sapiens
6
04/07/2018
ENA
34
-
RNAseq of the human gut commensal Bacteroides thetaiotaomicron wildtype, bt0700 and bt0700 bt3998 (ppGpp0) strains across three conditions: glucose minimal medium, 1h of carbon starvation, and mouse gut colonization
RNA-seq of coding RNA
Bacteroides thetaiotaomicron VPI-5482
29
04/07/2018
ENA
28
-
RNA-seq analysis of anti-malarial drug chemotherapy of murine experimental Cerebral Malaria (ECM)
RNA-seq of coding RNA
Mus musculus
39
03/07/2018
-
ENA
20
-
SNP array profiling of leiomyosarcoma
transcription profiling by array
Homo sapiens
26
02/07/2018
-
24
-
Identification of driver genes in uterine leiomyosarcoma: whole-genome sequencing
DNA-seq
Homo sapiens
4
02/07/2018
-
22
-
Identification of driver genes in uterine leiomyosarcoma: low-coverage WGS
DNA-seq
Homo sapiens
35
02/07/2018
-
ENA
23
-
Identification of driver genes in uterine leiomyosarcoma: RNA seq
RNA-seq of coding RNA
Homo sapiens
30
02/07/2018
-
ENA
26
-
RNA-seq of Fusarium graminearum under predation by the springtail Folsomia candida against untreated controls
RNA-seq of coding RNA
Fusarium graminearum
8
01/07/2018
-
ENA
30
-
RNA-seq of Streptococcus pyogenes biofilms
RNA-seq of coding RNA
Streptococcus pyogenes
18
01/07/2018
-
ENA
26
-
RNAseq of human bone marrow mesenchymal stem cells in co-culture with endothelial cells
RNA-seq of coding RNA
Homo sapiens
6
01/07/2018
-
ENA
36
-
Meiotic crossover landscape within the RAC1 disease resistance gene
DNA-seq
Arabidopsis thaliana
10
01/07/2018
-
ENA
20
-
Whole-genome shallow-sequencing of HPV-positive and HPV-negative vulvar lesions
DNA-seq
Homo sapiens
86
01/07/2018
ENA
27
-
Transcription profiling of irradiated non-adherent anoikis-resistant DU145 and MCF-7 cells and 5-azacytidine-treated non-adherent anoikis-resistant HeLa cells in contrast to control (non-irradiated, non-treated) cells
transcription profiling by array
Homo sapiens
26
01/07/2018
-
19
-
Development of a small molecule for treatment of castration resistant prostate cancer via androgen receptor and IL6/STAT3 pathways
transcription profiling by array
Homo sapiens
12
01/07/2018
-
21
-
Microarray of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC) and three tumor tissues including MC38, EL4 and LLC
transcription profiling by array
Mus musculus
21
30/06/2018
-
22
-
Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions
RNA-seq of coding RNA
Saccharomyces cerevisiae
8
30/06/2018
-
ENA
21
-
DNA methylation in acute sleep loss in humans
transcription profiling by array
Homo sapiens
60
30/06/2018
-
16
-
RNA-seq in acute sleep loss in humans
RNA-seq of coding RNA
Homo sapiens
60
30/06/2018
-
17
-
Single cell sequencing of 3 lung carcinomas
RNA-seq of coding RNA from single cells
Homo sapiens
12
30/06/2018
-
-
22
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 2
transcription profiling by array
Homo sapiens
378
30/06/2018
17
-
Transcriptional profiling of blood exposure response gene signature across clinical studies on The Tobacco Heating System 2.2 (THS 2.2) dataset 1
transcription profiling by array
Homo sapiens
296
30/06/2018
16
-
RNA-seq comparison of gene expression in enteroids derived of fresh or frozen human intestinal biopsies
RNA-seq of coding RNA
Homo sapiens
129
30/06/2018
-
ENA
16
-
RNA-seq of Staphylococcus aureus and Staphylococcus aureus challenged with squalene compared to control growth
RNA-seq of coding RNA
Staphylococcus aureus, Staphylococcus epidermidis
12
30/06/2018
ENA
13
-
CXCR3+ Treg cells suppress Th1-immune responses through expression of the co-inhibitory receptors CD85k and Lag-3
RNA-seq of coding RNA
Mus musculus
7
30/06/2018
-
ENA
13
-
Transcription profiling by array of the effect of rapamycin on Anopheles gambiae strains 2La or 2L+
transcription profiling by array
Anopheles gambiae
6
30/06/2018
-
13
-
Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing
RNA-seq of coding RNA
Aedes albopictus, Chlorocebus sabaeus
10
30/06/2018
-
ENA
13
-
ChIP-Seq (H3K4me3, H3K27me3) of steady-state splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
ChIP-seq
Mus musculus
18
30/06/2018
-
ENA
11
-
RNA-Seq of steady-state and LPS stimulated splenic classical dendritic cells from wild type, germ-free and IFNAR knockout mice
RNA-seq of coding RNA
Mus musculus
12
30/06/2018
-
ENA
12
-
Mutation in familial platelet disorder with predisposition to myeloid malignancies
DNA-seq
Homo sapiens
1
29/06/2018
-
ENA
17
-
RNA-seq of Candida intermedia growing in different media
RNA-seq of coding RNA
[Candida] intermedia
41
29/06/2018
-
ENA
12
-
RNA-seq of mouse crypts to investigate Rorc gamma t-deficient mice tissue repair compared to wild type controls
RNA-seq of coding RNA
Mus musculus
24
29/06/2018
-
ENA
12
-
Transcriptome profiling of Sinorhizobium meliloti Rm1021 grown in semisolid media (MM) in presence of 2-tridecanone (2-TDC)
transcription profiling by array
Sinorhizobium meliloti
3
29/06/2018
-
12
-
Gene expression profile of microdissected mucinous cystic neoplasms of the pancreas
transcription profiling by array
Homo sapiens
6
28/06/2018
-
12
-
Gene-expression profile of human embryonic germ cells
transcription profiling by array
Homo sapiens
11
28/06/2018
-
13
-
Gene expression profile of microdissected mucinous ovarian tumors
transcription profiling by array
Homo sapiens
17
28/06/2018
-
11
-
Anopheles coluzzii small RNAseq
RNA-seq of non coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
13
-
Anopheles coluzzii RNAseq
RNA-seq of coding RNA
Anopheles coluzzii
16
28/06/2018
-
ENA
17
-
Molecular Profiling of Chemoresistant Slow Cycling Cancer-Initiating Cells from human colorectal cancer, glioma and melanoma
transcription profiling by array
Homo sapiens
79
28/06/2018
24
-
Mapping hnRNP H binding sites on RON wildtype minigene and RON mutant minigenes via iCLIP
CLIP-seq
Homo sapiens
10
27/06/2018
-
ENA
16
-
Mapping hnRNP H binding sites on the RON wildtype minigene via iCLIP
CLIP-seq
Homo sapiens
2
27/06/2018
-
ENA
17
-
DNA-seq of a library of mutated minigene reporters
DNA-seq
Homo sapiens
2
27/06/2018
-
ENA
16
-
RNA-seq of the spliced products from a mutated minigene reporter library under control and hnRNP H knockdown conditions in MCF-7 cells
RNA-seq of coding RNA
Homo sapiens
6
27/06/2018
-
ENA
16
-
RNA-seq of the spliced products from a mutated minigene reporter library in HEK293T cells
RNA-seq of coding RNA
Homo sapiens
3
27/06/2018
-
ENA
16
-
Lotus japonicus response to Nod factor: wild type and nfre mutants
RNA-seq of coding RNA
Lotus japonicus
12
27/06/2018
-
ENA
20
-
RNA-seq of hepatocytes obtained through step-wise differentiation of hIPSCs from a patient with A1AT deficiency and its point mutation-corrected isogenic hIPSC line. Comparison to primary hepatocytes from a healthy donor and an A1AT-deficient patient
RNA-seq of coding RNA
Homo sapiens
8
26/06/2018
-
ENA
16
-
Expression data from draining lymph node and muscle of mice immunised with AS03 or PBS
transcription profiling by array
Mus musculus
35
26/06/2018
-
15
-
Gene expression profiling of patient-derived glioblastoma stem cell cultures
transcription profiling by array
Homo sapiens
16
26/06/2018
-
23
-
RNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
RNA-seq of coding RNA
Bacillus subtilis subsp. subtilis str. 168
18
26/06/2018
-
ENA
30
-
RNA-Seq of RAW 264.7 cells stimulated with the AS03 adjuvant after 4 and 8 hours
RNA-seq of coding RNA
Mus musculus
48
26/06/2018
ENA
27
-
Single-cell RNA-seq data of mammary gland epithelial cells from different gestational stages to detect and remove barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
160
25/06/2018
ENA
20
-
ChIP-seq analysis of bZIP73 binding sites in rice seedlings (Zhonghua11)
ChIP-seq
Oryza sativa Japonica Group
4
25/06/2018
-
ENA
17
-
NAT10 inhibition improves cellular phenotypes of Hutchinson-Gilford progeria syndrome by restoring the Transportin-1 pathway
transcription profiling by array
Homo sapiens
36
25/06/2018
-
15
-
Single-cell RNA sequencing of OT-I CD8+ T cells after stimulation with different affinity ligands
RNA-seq of coding RNA
Mus musculus
952
25/06/2018
ENA
46
-
ChIP-seq for Prep on whole zebrafish embryos at 3.5 and 12hpf
ChIP-seq
Danio rerio
8
25/06/2018
ENA
15
-
Foxp3+ regulatory T cells control psoriasiform skin inflammation by restraining a type 1 interferon driven CD8+ T cell response
transcription profiling by array
Mus musculus
18
24/06/2018
-
24
-
Transcriptomic analysis of the developing cerebellum in a mouse model for SRD5A3-CDG
transcription profiling by array
Mus musculus
8
24/06/2018
-
22
-
Methylation array for Multi-omics molecular profiling of primary prostate adenocarcinoma
methylation profiling by array
Homo sapiens
390
24/06/2018
18
-
Expression array for Multi-omics molecular profiling of primary prostate adenocarcinoma
transcription profiling by array
Homo sapiens
141
24/06/2018
-
15
-
SNP array for Multi-omics molecular profiling of primary prostate adenocarcinoma
genotyping by array
Homo sapiens
132
24/06/2018
-
16
-
Genome-wide maps of nuclear lamina interactions in HeLa cells identified using MethylAdenine IDentification (MadID)
MeDIP-seq
Homo sapiens
3
22/06/2018
ENA
22
-
Gene expression profiles of human breast cancer cell lines MCF-7, T47D and MDA-MB-231 co-cultured with 3T3-L1 adipocytes
transcription profiling by array
Homo sapiens
18
22/06/2018
30
-
Single cell RNA-sequencing of PBMC derived B cells from human healthy donor
RNA-seq of coding RNA from single cells
Homo sapiens
117
22/06/2018
-
ENA
29
-
RNA-Seq of murine lung tissue and blood treated with S. pneumoniae TIGR4 or S. aureus USA300 against PBS controls
RNA-seq of coding RNA
Mus musculus
36
22/06/2018
-
ENA
24
-
Single cell RNA-sequencing of T cells to examine barcode swapping
RNA-seq of coding RNA from single cells
Mus musculus
960
21/06/2018
ENA
48
-
RNA-seq of cultured parasites supplemented with sodium L-lactate
RNA-seq of coding RNA
Plasmodium falciparum 3D7
9
20/06/2018
-
ENA
38
-
Dual RNA-seq of peripheral blood from Gambian children with severe or uncomplicated Plasmodium falciparum malaria
RNA-seq of coding RNA
Homo sapiens
53
20/06/2018
-
ENA
30
-
microRNA array on plasma from two diffuse large B-cell lymphoma patients and one healthy donor
microRNA profiling by array
Homo sapiens
9
20/06/2018
20
-
TAP RNA-IP - MKT1
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
32
-
TAP RNA-IP - ZC3H22
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
31
-
TAP RNA-IP - MKT1L
RNA-seq of coding RNA
Trypanosoma brucei
4
18/06/2018
-
ENA
34
-
Whole transcriptome analysis of rat peritoneal cells in a TGFβ1 induced mesothelial-to-mesenchymal transition
RNA-seq of coding RNA
Rattus norvegicus
10
18/06/2018
-
ENA
28
-
RNA-seq of blood taken from patients suffering from sleeping sickness and infected with Trypanosoma brucei rhodesiense
RNA-seq of coding RNA
Homo sapiens
9
18/06/2018
-
ENA
30
-
Single-cell RNA-seq of de-differentiated mammary adipocytes during lactation
RNA-seq of coding RNA from single cells
Mus musculus
79
17/06/2018
ENA
34
-
ChIP-seq of Mycobacterium smegmatis PafBC to identify in vivo binding sites
ChIP-seq
Mycobacterium smegmatis str. MC2 155
16
17/06/2018
ENA
34
-
RNA-seq of Mycobacterium smegmatis mc2-155 SMR5 wild-type vs. a pafBC deletion strain under different growth/stress conditions
RNA-seq of coding RNA
Mycobacterium smegmatis str. MC2 155
12
17/06/2018
ENA
37
-
modified iCLIP experiment with the addition of a 5'marker to identify read-through reads
CLIP-seq
Homo sapiens
6
15/06/2018
-
ENA
36
-
RNA-seq of mouse wildtype HSCs purified from recipient mice co-transplanted with wildtype or different types of lymphoid cell deficient HSCs
RNA-seq of coding RNA
Mus musculus
11
14/06/2018
-
ENA
34
-
RNA-seq of wild-type and Tbx20 homozygous knockout E11.5 mouse cardiomyocytes to study Tbx20's roles in embryonic and adult mouse heart function
RNA-seq of coding RNA
Mus musculus
8
14/06/2018
-
ENA
55
-
RNA-seq across tissues in four Notothenioid species (Antarctic icefish)
RNA-seq of coding RNA
Harpagifer antarcticus, Neopagetopsis ionah, Parachaenichthys charcoti, Pseudochaenichthys georgianus
58
13/06/2018
-
ENA
40
-
RNA-seq of Myd88 cKO fibroblast reticular cells in mouse omentum on exposure to Salmonella typhi OmpC/F to investigate adaptive immunity
RNA-seq of coding RNA
Mus musculus
13
12/06/2018
-
ENA
45
-
Cell-of-origin epigenetic signatures are maintained during colorectal carcinogenesis
methylation profiling by array
Homo sapiens
146
12/06/2018
-
49
-
RNA-Seq on Malus domestica Braeburn x Cameo lines resistant and susceptible to bitter pit disorder
RNA-seq of coding RNA
Malus domestica
4
12/06/2018
-
ENA
40
-
Methylation arrays delineate the extent of 5mC and 5hmC in human brain and glioma samples
methylation profiling by array
Homo sapiens
56
12/06/2018
-
41
-
RNA-seq analysis of several in vitro models of hepatocyte function: Project 4 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
18
11/06/2018
-
ENA
44
-
RNA-seq analysis of two common T cell models, HUT78 and JURKAT E6.1: Project 5 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
8
11/06/2018
-
ENA
41
-
RNA-seq analysis of several immortalized B cell lines (Namalwa, Daudi, Ramos, Raji, Toledo, ARH-77): Project 6 of Open Targets - Epigenomes of Cell Lines
RNA-seq of coding RNA
Homo sapiens
12
11/06/2018
-
ENA
34
-
Microarray analyses of mouse dorsal root ganglia tissue for six different pain models
transcription profiling by array
Mus musculus
47
11/06/2018
-
36
-
Transcriptional analysis of differential immune and inflammatory responses to Sarcoptes scabiei infestation in a porcine model
transcription profiling by array
Sus scrofa
60
11/06/2018
-
41
-
Transcription profiling by array of CD4+ T cell or CD14 positive monocyte lysates or whole blood samples taken from kidney transplant recipients treated with or without Belimumab
transcription profiling by array
Homo sapiens
171
11/06/2018
-
33
-
ChIP-seq experiment to determine the genomic binding sites of mutant V5-tagged ZFHX2 R1913K protein in a stable-expressing human SH-SY5Y neuroblastoma cell line
ChIP-seq
Homo sapiens
3
11/06/2018
-
ENA
35
-
Microarray of BAC transgenic Zfhx2 p.R1907K mutant mice (4 genomic copies) versus wild-types
transcription profiling by array
Mus musculus
12
11/06/2018
-
33
-
Sequencing 5-hydroxymethyluracil via chemical modification and mismatch formation
DNA-seq
synthetic construct
42
08/06/2018
-
ENA
72
-
Methylation arrays (MethylationEPIC) reveal specific DNA hypermethylation of T cells during human hematopoietic differentiation
methylation profiling by array
Homo sapiens
10
08/06/2018
42
-
Microarray analysis of transcription changes in zebrafish embryos of different developmental ages after exposure to cyanide
transcription profiling by array
Danio rerio
12
08/06/2018
44
-
ATAC-seq of HEK293 cells with Alu-motif targeted dCas9GFP
ATAC-seq
Homo sapiens
9
07/06/2018
-
ENA
39
-
DNA methylome analysis of human pluripotent stem cells reprogrammed with CRISPRa
methylation profiling by array
Homo sapiens
64
07/06/2018
-
39
-
STRT RNAseq of human foreskin fibroblasts undergoing CRISPRa reprogramming
RNA-seq of coding RNA
Homo sapiens
44
07/06/2018
-
ENA
35
-
STRT RNAseq of pluripotent stem cells reprogrammed with CRISPRa
RNA-seq of coding RNA
Homo sapiens
26
07/06/2018
-
ENA
41
-
Possible role of Adrenomedullin and PLAUR in Hereditary Angioedema attacks: a transcriptomic analysis
transcription profiling by array
Homo sapiens
25
07/06/2018
-
32
-
Microarray on wild-type and mutant Hesx1 embryonic stem (ES) cells cultured in serum/LIF
transcription profiling by array
Mus musculus
3
07/06/2018
-
31
-
TMC-SNPdb: An Indian germline variant dataset derived from whole exome sequence
DNA-seq
Homo sapiens
62
06/06/2018
-
ENA
35
-
Transcription profiling by array to investigate psoriasis risk and non-risk isoforms of CCHCR1 in HEK293 cells
transcription profiling by array
Homo sapiens
15
04/06/2018
52
-
Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair
DNA-seq
Homo sapiens, Mus musculus
105
04/06/2018
-
ENA
42
-
Time series RNAseq of apical tissues along 4 developmental stages of development (I-III : vegetative stage; IV: sexually mature) in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
24
04/06/2018
-
ENA
40
-
RNASeq of mature leaf and root tissues, before and after flowering, in Mercurialis annua
RNA-seq of coding RNA
Mercurialis annua
40
04/06/2018
-
ENA
34
-
RNA-Seq of BW25113 Escherichia coli (wild-type and a mutant lacking yeaG) experiencing initial and sustained nitrogen starvation in Gutnick minimal media
RNA-seq of coding RNA
Escherichia coli K-12
14
04/06/2018
-
ENA
44
-
Genomic sequencing of T. brucei cell lines resistant to AN7973
DNA-seq
Trypanosoma brucei brucei
5
04/06/2018
ENA
35
-
Profiling of mRNA expression in irritable bowel syndrome vs healthy controls
transcription profiling by array
Homo sapiens
30
03/06/2018
53
-
Transcription profiling by array of wild type pea seeds and seeds with embryo-specific expression of a bacterial trehalose 6-phosphate phosphatase (TPP), encoded by the otsB gene to investigate the influence of decreased T6P content on gene expression in developing cotyledons
transcription profiling by array
Pisum sativum
23
01/06/2018
50
-
RNA-seq of primary murine (C57BL/6J) LSK cells overexpressing miR-10a or miR-335
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
42
-
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H2009 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
46
-
RNA-seq to investigate impact of treatment of KRAS mutant NCI-H358 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
48
-
RNA-seq to investigate impact of treatment of KRAS mutant A549 lung adenocarcinoma cells with the multi-ERBB inhibitor Neratinib
RNA-seq of coding RNA
Homo sapiens
6
01/06/2018
-
ENA
38
-
RBM7 activates P-TEFb for a pro-survival transcriptional response to DNA damage
CLIP-seq
Homo sapiens
6
01/06/2018
-
ENA
42
-
Progression of KRas^G12D;Rosa26-MYC tumours to invasive disease
RNA-seq of coding RNA
Mus musculus
8
01/06/2018
-
ENA
34
-
Transcriptome profiling of wild type, K159/298Q- and K159/298R- C/EBPα expressing mouse cells
RNA-seq of coding RNA
Mus musculus
9
01/06/2018
-
ENA
44
-
Transcription profiling by array of fetal RNA from amniotic fluid of twin-to-twin syndrome pregnancies compared to control single pregnancies
transcription profiling by array
Homo sapiens
32
01/06/2018
-
32
-
RNAseq of roots and leaves of tender wheat (Triticum aestivum cv chinese Spring) during interactions with mycorhizal fungi (Funneliformis mossae) with and without a pathogen attack by Xanthomonas translucens
RNA-seq of coding RNA
Triticum aestivum
12
01/06/2018
-
ENA
39
-
RNA-seq analysis of EpiSCs undergoing differentiation induced by EB formation
RNA-seq of coding RNA
Mus musculus
6
01/06/2018
ENA
42
-
ChIP-seq analysis of Esrrb, Nanog, Oct4, and Sox2 in EpiSCs undergoing reprogramming
ChIP-seq
Mus musculus
25
01/06/2018
ENA
91
-
Microarray analysis of EpiSCs undergoing reprogramming by Esrrb
transcription profiling by array
Mus musculus
34
01/06/2018
-
37
-
Differentiating liposarcoma from lipoma using a simple blood test: A miRNA signature
transcription profiling by array
Homo sapiens
10
01/06/2018
-
38
-
Nucleosome occupancy during NuRD complex induction
MNase-seq
Mus musculus
9
31/05/2018
-
ENA
32
-
Transcription profiling by RNA-seq during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
24
31/05/2018
-
ENA
30
-
RNA-seq profiling of nascent transcription during NuRD complex induction in mouse embryonic stem cells
RNA-seq of coding RNA
Mus musculus
18
31/05/2018
-
ENA
26
-
Transcription factor binding and epigenetic modifications during NuRD complex induction
ChIP-seq
Mus musculus
126
31/05/2018
-
ENA
118
-
ChIP-seq of CIC (Capicua) and histone marks (H3K9ac, H3K27ac and H3K4me1) in glioma neural stem cells (GNS) G144, human foetal neural stem cells (hNSC) and mouse embryonic stem cells (mESC),
ChIP-seq
Homo sapiens, Mus musculus
33
31/05/2018
ENA
97
-
RNA-seq of Glioma Neural Stem (GNS) cell line G144 after MEK inhibition in wild type (WT) and CIC (Capicua) depleted cells
RNA-seq of coding RNA
Homo sapiens
27
31/05/2018
-
ENA
42
-
Transcription profiling by array of pulmonary gene expression in response to interleukin-22 during severe influenza
transcription profiling by array
Mus musculus
19
31/05/2018
-
20
-
Identification of target genes of Cud-type transcription factor, spaA, in a Dictyostelid social amoebae by ChIP-seq
ChIP-seq
Dictyostelium discoideum
6
31/05/2018
-
ENA
37
-
Whole Transcriptome sequencing TSCC (tongue squamous cell carcinoma)
RNA-seq of coding RNA
Homo sapiens
15
31/05/2018
-
ENA
35
-
Whole exome sequencing of TSCC (tongue squamous cell carcinoma)
DNA-seq
Homo sapiens
24
31/05/2018
-
ENA
22
-
scRNA-seq of mouse subcutaneous Lin- SVF cells
RNA-seq of coding RNA from single cells
Mus musculus
1
30/05/2018
-
39
-
Transcription profiling by array of Arabidopsis thaliana shoots treated with either DEX or CHX to identify STM-regulated target genes
transcription profiling by array
Arabidopsis thaliana
12
29/05/2018
-
61
-
Hypothalamic DNA-methylation differences in Red Junglefowl divergently selected for reduced fear of humans
MeDIP-seq
Gallus gallus
12
29/05/2018
-
ENA
22
-
RNA-seq of PDAC tissues grown as patient-derived tumor xenografts
RNA-seq of coding RNA
Homo sapiens
24
29/05/2018
-
ENA
45
-
ChIP-seq of PDAC tissues grown as patient-derived tumor xenografts
ChIP-seq
Homo sapiens
144
29/05/2018
-
ENA
99
-
RNA-seq of mutant Mycobacterium neoaurum producing steroid intermediates compared with wild-type strain
RNA-seq of coding RNA
Mycobacterium neoaurum
5
26/05/2018
-
ENA
34
-
RNA-seq of an adult Porites rus colony derived from Indonesia
RNA-seq of coding RNA
Porites rus
1
25/05/2018
-
ENA
47
-
RNA-Seq of 293T cells depleted of U2AF-related proteins
RNA-seq of coding RNA
Homo sapiens
6
25/05/2018
-
ENA
69
-
Copy number variants analysis of heterotaxy syndrome patients with congenital heart defects
genotyping by array
Homo sapiens
63
24/05/2018
-
32
-
Monocyte-derived IL-1 and IL-6 are differentially required for cytokine release syndrome and neurotoxicity by CAR-T cells
RNA-seq of coding RNA from single cells
Homo sapiens
4
24/05/2018
-
-
75
-
RNAseq of whole ovarian follicles from young and old mice
RNA-seq of coding RNA
Mus musculus
48
22/05/2018
-
ENA
39
-
Microarray of formalin-fixed, paraffin-embedded uninvolved terminal ileal tissue obtained from ileo-colic resection surgeries of Crohn’s disease and control patients
transcription profiling by array
Homo sapiens
136
22/05/2018
-
69
-
RNA-seq of formalin-fixed, paraffin-embedded uninvolved terminal ileal tissue obtained from ileo-colic resection surgeries of Crohns disease and control patients
RNA-seq of coding RNA
Homo sapiens
68
22/05/2018
ENA
79
-
RNA-seq on Hesx1+/+ and Hesx1-/- ES cells deprived of 2i/LIF for 24 hours
RNA-seq of coding RNA
Mus musculus
5
21/05/2018
-
ENA
41
-
PUF2 and UBP1 RNAi and pull-down in Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
6
21/05/2018
-
ENA
37
-
MIRNA - Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
91
19/05/2018
83
-
DNA-METHYLATION - Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
198
19/05/2018
74
-
MRNA-Integrative multi-omics survey of effects carbon-based engineered nanomaterials on lung derived cell-lines
transcription profiling by array
Homo sapiens
64
19/05/2018
94
-
Regulation of total and polysomal RNA expression in rat neonatal cardiac myocytes by H2O2
transcription profiling by array
Rattus norvegicus
16
17/05/2018
-
63
-
Haploid genetic screen for components of MLKL-mediated cell death
DNA-seq
Homo sapiens
2
16/05/2018
-
ENA
94
-
RNA-seq analysis of Arabidopsis sulki1, Kas-2 and Ler/Kas-2 near isogenic line (NIL)
RNA-seq of coding RNA
Arabidopsis thaliana
9
16/05/2018
-
ENA
101
-
RNA-Seq of human aortic endothelial cells with lysophosphatidylinositol against untreated controls
RNA-seq of coding RNA
Homo sapiens
6
16/05/2018
-
ENA
87
-
RNA-Seq of human aortic endothelial cells with lysophosphatidylcholine against untreated controls
RNA-seq of coding RNA
Homo sapiens
2
16/05/2018
-
ENA
70
-
Microarray transcription profiling of healthy and PVYNTN infected potato tuber tissues (necrotic and non-necrotic)
transcription profiling by array
Solanum tuberosum
16
16/05/2018
56
-
Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain
RNA-seq of coding RNA
Equus caballus
10
15/05/2018
-
ENA
49
-
Transcriptome analysis of khd-1, spen-1 and hub1-4 Arabidopsis mutants
RNA-seq of coding RNA
Arabidopsis thaliana
12
14/05/2018
ENA
91
-
BCL-2 levels do not predict azathioprine treatment response in inflammatory bowel disease, but inhibition induces lymphocyte apoptosis and ameliorates colitis in mice
RNA-seq of coding RNA
Homo sapiens
6
14/05/2018
ENA
81
-
Identification of the Tetracycline dependent genes in Salmonella enterica serovar Typhimurium SL1344 (R27)
transcription profiling by array
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
6
14/05/2018
-
48
-
RNA-seq of the anterior third (head) region of fifty pooled danio rerio embryos at the 15-somite stage following crispld2 morpholino knockdown compared to uninjected controls
RNA-seq of coding RNA
Danio rerio
2
13/05/2018
ENA
48
-
RNA-seq of myocytes from mice treated in vivo for 3 days with vehicle, angiotensin II, or phenylephrine
RNA-seq of coding RNA
Mus musculus
14
12/05/2018
ENA
61
-
Whole-genome methylation analysis (450k) of school aged children prenatally exposed to alcohol vs controls
methylation profiling by array
Homo sapiens
358
12/05/2018
72
-
Transcription profiling by RNA-seq of Arabidopsis thaliana (Col-0) cell lines following light exposure to study chloroplast development
RNA-seq of coding RNA
Arabidopsis thaliana
24
12/05/2018
-
ENA
60
-
Illumina Infinium HumanMethylation450 BeadChip profiling of paediatric high grade gliomas from the HERBY clinical trial
methylation profiling by array
Homo sapiens
164
11/05/2018
-
86
-
Variation in RNA expression in a panel of 30 breast cancer cell lines
RNA-seq of coding RNA
Homo sapiens
30
11/05/2018
ENA
201
-
Expression profiling of mouse CD4+ T cells following Klf1 retrovirus vector transfection
RNA-seq of coding RNA
Mus musculus
12
10/05/2018
-
ENA
47
-
RNA-Seq of seed dormancy in red rice
RNA-seq of coding RNA
Oryza sativa
18
10/05/2018
-
ENA
131
-
Effects on adult testis of Sertoli cell-specific ablation of miR-17-92 in mouse embryos
RNA-seq of coding RNA
Mus musculus
6
10/05/2018
-
ENA
40
-
Transcription profiling by array of 60 pre-chemotherapy FFPE endoscopic oesophageal adenocarcinoma biopsies
transcription profiling by array
Homo sapiens
63
10/05/2018
-
60
-
Transcriptional profiling of human bronchial epithelial cell BEAS-2B exposed to diesel and biomass ultrafine particles
RNA-seq of coding RNA
Homo sapiens
45
09/05/2018
ENA
99
-
Microarray and transcript expression analysis of P. aeruginosa grown with or without bacterial (Exiguobacterium indicum SJ16) extracts
transcription profiling by array
Pseudomonas aeruginosa PAO1
2
08/05/2018
-
13
-
Gene expression data from 10 untreated human colon cancer cell lines
transcription profiling by array
Homo sapiens
20
08/05/2018
129
-
Single-cell RNA-seq of murine medullary thymic epithelial cells (mTECs)
RNA-seq of coding RNA from single cells
Mus musculus
164
08/05/2018
ENA
69
-
Thioredoxin DCC1 regulates shoot regeneration through modulating multiple genes expression by RNA-seq analyses in Arabidopsis
RNA-seq of coding RNA
Arabidopsis thaliana
6
06/05/2018
ENA
74
-
The expression profiles of miRNAs in H. pylori infected esophageal cells were analyzed by microarray
microRNA profiling by array
Homo sapiens
4
05/05/2018
-
73
-
RNA-seq of peri-infarct cortex of the rat dMCAO model of ischemic stroke treated with AAV7-hMANF or AAV7-GFP
RNA-seq of coding RNA
Rattus norvegicus
10
04/05/2018
-
ENA
80
-
RNA-seq of human ovarian adenocarcinoma cell line SKOV3 treated with bisphenol A (10 or 100 nM) against untreated controls
RNA-seq of coding RNA
Homo sapiens
9
04/05/2018
-
ENA
113
-
Single cell RNA-seq of WTC-CRISPRi human induced pluripotent stem cells
RNA-seq of coding RNA from single cells
Homo sapiens
5
03/05/2018
-
130
-
RNA-seq of HeLa-MZ cells treated with Wnt3a conditioned media for 0, 2 and 6 hours
RNA-seq of coding RNA
Homo sapiens
29
01/05/2018
-
ENA
117
-
RNA-seq to investigate differentially expressed genes in KPC mouse PDAC treated with CSF-1R small molecule inhibitor AZD7507 and/or the CXCR2 small molecule inhibitor AZD5069
RNA-seq of coding RNA
Mus musculus
58
01/05/2018
-
ENA
186
-
Transcriptome 3' end profiling by high throughput sequencing of HeLa cells depleted of MATR3, PTBP1/2 individually or in combination
RNA-seq of coding RNA
Homo sapiens
20
01/05/2018
-
ENA
62
-
4SU-iCLIP of PTBP1 from HEK293 cells with or without MATR3 depletion
RNA-seq of coding RNA
Homo sapiens
4
01/05/2018
-
ENA
50
-
iCLIP of MATR3 from C57BL/6J wildtype mice
CLIP-seq
Mus musculus
7
01/05/2018
-
ENA
49
-
Transciptome time course of Arabidopsis stigma senescence
RNA-seq of coding RNA
Arabidopsis thaliana
9
01/05/2018
-
ENA
70
-
4SU-iCLIP of MATR3 from HEK293 cells with or without PTBP1 depletion
CLIP-seq
Homo sapiens
3
01/05/2018
-
ENA
51
-
Transcriptome profiling by high throughput sequencing of HeLa cells depleted of MATR3, PTBP1/2 individually or in combination by siRNA
RNA-seq of coding RNA
Homo sapiens
36
01/05/2018
-
ENA
90
-
Transcriptional profiling of tfap2a;tfap2c loss of function in zebrafish single whole embryos at 15 somites post fertilisation
RNA-seq of coding RNA
Danio rerio
360
01/05/2018
ENA
58
-
RNA-seq to investigate host response in resistant versus susceptible breeds of Gallus gallus to Newcastle disease virus challenge in the Harderian gland transcriptome
RNA-seq of coding RNA
Gallus gallus
94
01/05/2018
-
ENA
51
-
Atp4b-Cre;Cdh1(fl/fl);Kras(LSL-G12D/+);Trp53(fl/fl);Rosa26(LSL-YFP/LSL-YFP) mouse stomach vs. Atp4b-Cre;Cdh1(fl/+);Kras(LSL-G12D/+);Trp53(fl/fl);Rosa26(LSL-YFP/LSL-YFP) mouse stomach microarray
transcription profiling by array
Mus musculus
8
01/05/2018
100
-
RNA-seq of mouse adipose stem and progenitor cells
RNA-seq of coding RNA
Mus musculus
10
01/05/2018
ENA
75
-
scRNA-seq of mouse adipose stem and progenitor cells
RNA-seq of coding RNA from single cells
Mus musculus
288
01/05/2018
ENA
66
-
3' RNA-seq of CD142+/- mouse adipose stem and progenitor cells
RNA-seq of coding RNA
Mus musculus
50
01/05/2018
ENA
59
-
3' RNA-seq of CD142+/- human adipose stem and progenitor cells
RNA-seq of coding RNA
Homo sapiens
12
01/05/2018
ENA
49
-
Comparative transcriptome analysis of a lowly virulent strain of Erwinia amylovora in shoots of two apple cultivars susceptible and resistant to fire blight
RNA-seq of coding RNA
Erwinia amylovora
30
01/05/2018
-
ENA
40
-
RNA-seq of barley lines after dehydration, spider mite or combined stress
RNA-seq of coding RNA
Hordeum vulgare subsp. vulgare
12
30/04/2018
-
ENA
49
-
ChIP-seq of IDS1-myc using Oryza sativa seedlings
ChIP-seq
Oryza sativa Japonica Group
4
30/04/2018
ENA
321
-
DNA methylation profiling of BEAS-2B cells exposed to low doses of Ag nanoparticles for 6 weeks
methylation profiling by array
Homo sapiens
6
30/04/2018
-
34
-
RNA-Seq of BEAS-2B cells treated with low doses of Ag nanoparticles for 6 weeks
RNA-seq of coding RNA
Homo sapiens
13
30/04/2018
ENA
39
-
Examination of tumor samples obtained after laparoscopic supracervical hysterectomy and a derivative leiomyosarcoma
comparative genomic hybridization by array
Homo sapiens
10
30/04/2018
-
48
-
Transcriptional response of Pseudomonas aeruginosa PAO1 to NaClO
transcription profiling by array
Pseudomonas aeruginosa PAO1
4
30/04/2018
-
51
-
Identification of transcript dysregulation in rats with a neuropathic pain, treated or not with vitamin D
transcription profiling by array
Rattus norvegicus
6
29/04/2018
-
9
-
RNA-seq of Pseudomonas aeruginosa PAO1 planktonic and biofilm cells treated with coumarin
RNA-seq of coding RNA
Pseudomonas aeruginosa PAO1
12
29/04/2018
-
ENA
62
-
Genetic Engineering of indica Rice with AtDREB1A Gene for enhanced Abiotic Stress Tolerance
transcription profiling by array
Oryza sativa Indica Group
8
29/04/2018
-
54
-
Ultra-deep sequencing of plasma DNA identifies druggable mutations in hepatocellular carcinoma
genotyping by high throughput sequencing
Homo sapiens
40
29/04/2018
-
ENA
65
-
Gene expression profile in human monocytes treated with IgG from APS patients or IgG from controls
transcription profiling by array
Homo sapiens
22
28/04/2018
-
56
-