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AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
RNA-Seq analysis of an industry isolated Pseudomonas aeruginosa strain following exposure to preservatives and product formulations
RNA-seq of coding RNA
Pseudomonas aeruginosa
32
Yesterday
-
ENA
7
-
Transcriptional profiling by array of chronic myeloid leukaemia (CML) stem/progenitor cells (CD34+38-) treated with tyrosine kinase inhibitors (imatinib, dasatinib and nilotinib) at different time points (8 hours and 7 days) against untreated controls
transcription profiling by array
Homo sapiens
49
Yesterday
-
271
-
Time-lapse Deep-seq of E. coli Metabolite Production Pathway
DNA-seq
Escherichia coli K-12
26
19/01/2018
-
ENA
12
-
Genome-wide characterisation of DNA methylation in an invasive Lepidopteran pest, the cotton bollworm Helicoverpa armigera
methylation profiling by high throughput sequencing
Helicoverpa armigera
1
19/01/2018
-
ENA
11
-
RNA-seq transcriptome profiling of the psychrophilic diatom Fragilariopsis cylindrus under six treatments simulating conditions within sea ice
RNA-seq of coding RNA
Fragilariopsis cylindrus
15
18/01/2018
-
ENA
12
-
Ribosome profiling of the retrovirus murine leukemia virus in Rat2 cells
RNA-seq of coding RNA
Rattus norvegicus
9
17/01/2018
-
ENA
29
-
Transcription profiling by array of oral squamous cell cancer (OSCC) surgical margins defined by narrow band imaging
transcription profiling by array
Homo sapiens
49
17/01/2018
33
-
RNA-seq of human normal mammary gland cells FACS sorted into three populations: ALDH+, ALDH-CD44+CD24-, and ALDH-CD44-CD24+
RNA-seq of coding RNA
Homo sapiens
9
17/01/2018
-
ENA
10
-
microRNA profiling by array of paired samples tumor tissue/normal adjacent tissue from colon cancer patients
microRNA profiling by array
Homo sapiens
10
17/01/2018
-
17
-
MicroRNA analysis in HPV-positive and HPV-negative cervical cancer cell lines
microRNA profiling by array
Homo sapiens
6
16/01/2018
-
19
-
MicroRNA expression profile in human foreskin keratinocytes (HFKs) transduced with retroviral vectors carrying E6 and E7 genes of either HPV6 or HPV16 and with the LXSN empty vector
microRNA profiling by array
Homo sapiens
23
16/01/2018
-
17
-
Transcriptional profiling of triple-negative breast cancer cell lines treated with OTX015
transcription profiling by array
Homo sapiens
11
16/01/2018
27
-
Effect of HE4 overexpression or treatment with recombinant HE4 protein on OVCAR8 ovarian cancer cells
transcription profiling by array
Homo sapiens
12
15/01/2018
26
-
Transcription profiling by array of U-2987-MG glioma derived cell line to investigate the effect of Snail1 overexpression compared to control
transcription profiling by array
Homo sapiens
8
15/01/2018
-
30
-
RNA-seq of platelets derived from blood of healthy human donors in response to physiological stimuli collagen or Thrombin Receptor Activating Peptide compared to untreated controls
RNA-seq of coding RNA
Homo sapiens
9
15/01/2018
-
ENA
13
-
Whole transcriptome profiling by microarray of monocytes stimulated with LPS and treated with trabectedin, lurbinectedin or doxorubicin
transcription profiling by array
Homo sapiens
16
15/01/2018
16
-
Transcription profiling by array of carcinoma-stem-like cells (CSC) extracted from a primary ovarian cancer cell line
transcription profiling by array
Homo sapiens
6
15/01/2018
10
-
Comparative transcriptomics of Rhizobium mesoamericanum STM3625, Cupriavidus taiwanensis LMG19424 and Burkholderia phymatum STM815 when induced by root exudates of Mimosa pudica
RNA-seq of coding RNA
Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG 19424, Rhizobium mesoamericanum STM3625
18
15/01/2018
-
ENA
16
-
microRNA expression profiling of CML and normal quiescent cells
microRNA profiling by array
Homo sapiens
10
12/01/2018
-
36
-
Immune transcriptional profiling in end-stage renal disease
transcription profiling by array
Homo sapiens
480
11/01/2018
49
-
Dry seed transcriptome differences associated with relief of sly1-2 seed dormancy through after-ripening or overexpression of the gibberellin-receptor GID1b
transcription profiling by array
Arabidopsis thaliana
12
10/01/2018
41
-
Fibroblasts potentiate melanoma cells in vitro invasivity induced by UV-irradiated keratinocytes - transcription profiling
transcription profiling by array
Homo sapiens
10
10/01/2018
-
32
-
Targeted next generation sequencing of cfDNA from lung cancer patients enrolled in the GALAXY-1 trial (NCT01348126)
DNA-seq
Homo sapiens
306
10/01/2018
-
ENA
45
-
High resolution survey of drought, high salinity, heat and cold stress-induced transcriptome of bioenergy feedstock model plant western poplar (Populus trichocarpa) accession Nisqually-1
RNA-seq of coding RNA
Populus trichocarpa
81
10/01/2018
-
ENA
40
-
Transgenic expression of BEN, a member of TFII-I family, in various murine adipose tissues
RNA-seq of coding RNA
Mus musculus
16
10/01/2018
-
ENA
41
-
Dual IRE1 RNase functions dictate glioblastoma development
transcription profiling by array
Homo sapiens
119
09/01/2018
-
23
-
Gene expression profile of Huh7 cells upon knock-down of FOXA2 or FOXA2-DS-S
transcription profiling by array
Homo sapiens
9
09/01/2018
265
-
Transduced cord blood CD34+ cells with empty vector, AML1-ETO and ETV6-RUNX1
transcription profiling by array
Homo sapiens
30
07/01/2018
-
58
-
Stromal myofibroblasts drive tumorigenesis in Peutz-Jeghers Syndrome polyposis models
RNA-seq of coding RNA
Mus musculus
15
05/01/2018
ENA
77
-
Transcription profiling by array of human macrophages treated with miR-182 and infected with Francisella tularensis
transcription profiling by array
Homo sapiens
12
05/01/2018
-
56
-
RNAseq analysis of Xcc strain B100 in minimum media
RNA-seq of coding RNA
Xanthomonas campestris pv. campestris
1
04/01/2018
-
ENA
56
-
RNA-seq of WTAP knockdown human pluripotent stem cells during the exit from pluripotency induced by Activin/Nodal inhibition
RNA-seq of coding RNA
Homo sapiens
18
04/01/2018
-
ENA
52
-
Transcription profiling by array of neonatal mouse cardiomyocytes (NMC) cultured in hypoxia (3% O2) with and without a lentiviral shRNA-mediated knockdown of Sf3b1 to investigate alternative splicing
transcription profiling by array
Mus musculus
6
03/01/2018
-
43
-
Cytokine-mediated natural killer cells effects impair hematopoietic stem cell function
transcription profiling by array
Mus musculus
16
02/01/2018
-
49
-
RNA-seq analysis of grxs17 seedlings
RNA-seq of coding RNA
Arabidopsis thaliana
3
02/01/2018
-
ENA
46
-
Pdx1 occupancy during mouse and human development
ChIP-seq
Mus musculus
3
02/01/2018
ENA
52
-
RNA-seq of human U2OS cells depleted of NUAK1 by shRNA compared to control
RNA-seq of coding RNA
Homo sapiens
6
01/01/2018
-
ENA
67
-
Transcription profiling by array of adult mouse lung exposed to room air (control) or 100% oxygen between postnatal days 0 to 4
transcription profiling by array
Mus musculus
6
01/01/2018
-
46
-
Detecting Early Signs of Heat and Drought Stress in Phoenix dactylifera (Date Palm)
RNA-seq of coding RNA
Phoenix dactylifera
32
01/01/2018
-
ENA
55
-
Microarray experiment to characterise the signalling pathways downstream SUCNR1 activation in murine Neural Stem Cells (NSCs)
transcription profiling by array
Mus musculus
12
01/01/2018
-
47
-
Microarray experiment of murine macrophages co-cultured with neural stem cells in the presences of LPS
transcription profiling by array
Mus musculus
16
01/01/2018
-
47
-
Characterization of the transcriptional response to hypoxia in MDA-MB-231-shCAIX, MCF7-shCAIX and the respective control cells grown as multicellular spheroids under hypoxic or normoxic conditions
transcription profiling by array
Homo sapiens
16
01/01/2018
-
74
-
RNA-seq analysis of normoxic and hypoxic tumor-associated macrophages from wild type or REDD1 knockout mice
RNA-seq of coding RNA
Mus musculus
16
01/01/2018
-
ENA
57
-
RIP-chip by array of intestinal tumours from Elavl1 overexpressing and wild-type mice in a mouse model of colitis associated cancer
RIP-chip by array
Mus musculus
6
01/01/2018
-
38
-
Transcription profiling by array of intestinal tumours from Elavl1 overexpressing and wild-type mice in a mouse model of colitis associated cancer
transcription profiling by array
Mus musculus
6
01/01/2018
-
32
-
Translation profiling by array of mouse epithelial cell lines (CMT93) in which HuR is overexpressed or knocked down
translation profiling
Mus musculus
6
01/01/2018
-
27
-
Gene expression profiling of 621-101 cells with rapamycin treatment and Rheb downregulation
transcription profiling by array
Homo sapiens
12
01/01/2018
-
56
-
Genome-scale transcriptomic study into the role of AbsA2 in regulating antibiotic biosynthesis in Streptomyces coelicolor
transcription profiling by array
Streptomyces coelicolor A3(2)
12
01/01/2018
33
-
Genome-scale ChIP-on-chip study into the role of AbsA2 in regulating antibiotic biosynthesis in Streptomyces coelicolor
ChIP-chip by array
Streptomyces coelicolor A3(2)
12
01/01/2018
26
-
Transcriptome responses in the abscission, distal and proximal regions of the flower pedicel during shedding of flower in Euphorbia pulcherrima
RNA-seq of coding RNA
Euphorbia pulcherrima
36
31/12/2017
-
ENA
46
-
RNA-IP of TAP-tagged 4EIP in Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
4
31/12/2017
-
ENA
36
-
Control human blood RNA
RNA-seq of coding RNA
Homo sapiens
3
31/12/2017
-
ENA
37
-
Deconvolution ChIP-seq profiling of UTF and RPA194 in K562 cells to identify analogous enhancer structures on mouse and human ribosomal RNA genes
ChIP-seq
Homo sapiens
4
31/12/2017
-
ENA
40
-
Transcription profiling by array of Arabidopsis thaliana columbia and DEWAX2 overexpression plants line stems
transcription profiling by array
Arabidopsis thaliana
6
31/12/2017
-
24
-
Trigeminal Ganglion Transcriptome Analysis in Rat Models of Medication Overuse Headache Reveals Coherent and Widespread Induction of Pronociceptive Gene Expression Patterns
transcription profiling by array
Rattus norvegicus
2
31/12/2017
-
26
-
Differential expression analysis of human small RNAs in young normal, old normal (protected)) and old osteoarthritis (unprotected ) knee cartilage
microRNA profiling by array
Homo sapiens
29
31/12/2017
-
31
-
Differential expression analysis of small RNAs in young normal and old osteoarthritis cartilage
microRNA profiling by array
Homo sapiens
12
31/12/2017
-
26
-
RNA-seq of hippocampal samples from IL-18KO/APP/PS1 , WT, IL-18KO, and APP/PS1 mice
RNA-seq of coding RNA
Mus musculus domesticus
16
31/12/2017
-
ENA
25
-
Molecular response of Atinian elm during vessel invasion by vascular pathogen Ophiostoma novo-ulmi
transcription profiling by array
Ulmus minor
15
31/12/2017
-
22
-
Simple sequence repeat identification for RSS1 gene in multiple varieties of Oryza sativa
DNA-seq
Oryza sativa, Oryza sativa Indica Group, Oryza sativa Japonica Group
6
31/12/2017
-
ENA
25
-
Simple sequence repeat identification for RBOHB gene in multiple varieties of Oryza sativa
DNA-seq
Oryza sativa, Oryza sativa Indica Group, Oryza sativa Japonica Group
6
31/12/2017
-
ENA
23
-
Gene expression profiling of acute myeloid leukemia samples from Polish adult AML-M1 and M2 patients
transcription profiling by array
Homo sapiens
118
31/12/2017
-
34
-
Transcription profiling of HL-60 acute myeloid leukemia cells treated with Daunorubicin (DNR), Cytarabin (Ara-C), or NADPH oxidase inhibitor VAS2870
transcription profiling by array
Homo sapiens
12
31/12/2017
27
-
Microarray analysis of Du145, PC3 and LNCaP human prostate cancer cell lines
transcription profiling by tiling array
Homo sapiens
36
31/12/2017
-
42
-
RNA-Seq analysis in bovine muscle
RNA-seq of coding RNA
Bos taurus
8
31/12/2017
-
ENA
32
-
RNAseq of coding RNA in the liver, spleen, kidney, abdominal muscle and gonadal adipose tissue of knock out mice and wild type controls
RNA-seq of coding RNA
Mus musculus
94
31/12/2017
-
ENA
30
-
Next Generation Sequencing Analysis of Wild Type and VAChTNkx2.1-Cre-flox/flox Hippocampal Transcriptomes
RNA-seq of coding RNA
Mus musculus
7
31/12/2017
ENA
25
-
Defining the genomic occupancy of the general regulatory factor Abf1 in budding yeast
ChIP-chip by array
Saccharomyces cerevisiae
3
31/12/2017
-
21
-
Wilms tumour arises from a precursor cell capable of generating the entire kidney
transcription profiling by array
Homo sapiens
32
31/12/2017
-
26
-
Transcription of Alkylsuccinate Synthase Genes in Desulfatibacillum alkenivorans AK-01
transcription profiling by array
Desulfatibacillum alkenivorans
12
31/12/2017
16
-
The genome-scale DNA-binding of FadR transcription factor in Sulfolobus acidocaldarius
ChIP-seq
Sulfolobus acidocaldarius DSM 639
6
30/12/2017
-
ENA
23
-
Rat infection with Trypanosoma rhodesiense clinical isolates
RNA-seq of coding RNA
Rattus norvegicus
10
30/12/2017
-
ENA
22
-
Transcription profiling of endometrial cancer comparing aggressive primary tumors and metastases
transcription profiling by array
Homo sapiens
111
30/12/2017
77
-
Transcription profiling by array of a pancreatic cancer cell line treated with 8 different statins compared with untreated or vehicle treated controls
transcription profiling by array
Homo sapiens
53
30/12/2017
30
-
Molecular and cellular dynamics in the skin, the lymph nodes and the blood of the immune response to intradermal injection of Modified Vaccinia Ankara vaccine
transcription profiling by array
Macaca fascicularis
21
29/12/2017
-
30
-
RNA seq of different species of Salsoleae with different photosynthetic types
RNA-seq of coding RNA
Hammada scoparia, Salsola divaricata, Salsola oppositifolia, Salsola webbii
24
29/12/2017
-
ENA
25
-
Effect of silencing DLC1 (Deleted in Liver Cancer 1) in Human Umbilical Vein Endothelial Cells (HUVEC)
transcription profiling by array
Homo sapiens
11
28/12/2017
-
57
-
Activin/Nodal-dependent N6-methyladenosine (m6A) deposition in human pluripotent stem cells
RIP-seq, methylation profiling by high throughput sequencing
Homo sapiens
12
26/12/2017
-
ENA
56
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run6)
DNA-seq
Danio rerio
17
25/12/2017
ENA
46
-
Identification of drought responsive genes at reproductive stage in upland rice variety Nagina22 through comparative microarray analysis
transcription profiling by array
Oryza sativa Indica Group
6
25/12/2017
-
37
-
North American Beaver (Castor canadensis) RNAseq 16 pooled tissue samples
RNA-seq of coding RNA
Castor canadensis
1
24/12/2017
-
ENA
36
-
Transcription profiling of Arabidopsis srk2abgh mutant plants under a dehydration stress condition
transcription profiling by array
Arabidopsis thaliana
4
24/12/2017
-
32
-
Transcriptional profiling using microarrays to elucidate the effects of partial whiB1 gene deletion in Mycobacterium tuberculosis H37Rv
transcription profiling by array
Mycobacterium tuberculosis
8
22/12/2017
-
35
-
Giant marker chromosomes in cancer
genotyping by array
Homo sapiens
4
22/12/2017
-
35
-
ACE-Scan of the natural add riboswitch aptamer on 10^10 Gen1 DNA microarrays with varying buffer temperatures and Mg2+ cation concentrations
comparative genomic hybridization by array
synthetic construct
24
20/12/2017
-
5
-
ACE-Scan of the thrombin DNA aptamer on 10^10 Gen1 DNA microarrays with sodium and potassium buffers in two colors
comparative genomic hybridization by array
synthetic construct
12
20/12/2017
-
2
-
ACE-Scan of the cocaine DNA aptamer on 10^12 Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
2
-
ACE-Scan of the ATP RNA aptamer on 10^12 Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
1
20/12/2017
-
2
-
ACE-Scan of the ATP DNA aptamer on various density Gen2 DNA microarrays
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
3
-
ACE-Scan of the ATP DNA aptamer on 10^12 density Gen1 DNA microarray
comparative genomic hybridization by array
synthetic construct
6
20/12/2017
-
3
-
Bulk RNA-seq validation experiment comparing blood from healthy donors and two groups of metastatic melanoma patients: responders and non-responders to anti-PD-1 immunotherapy
RNA-seq of coding RNA
Homo sapiens
12
20/12/2017
-
ENA
173
-
Genome wide analysis of STAT3-mediated transcription and binding sites in mouse female germ stem cell (ChIP-seq)
ChIP-seq
Mus musculus
2
20/12/2017
-
ENA
43
-
Genome wide analysis of STAT3-mediated transcription and binding sites in mouse female germ stem cell (RNA-seq)
RNA-seq of coding RNA
Mus musculus
4
20/12/2017
-
ENA
56
-
Transcription profiling by array to investigate doxorubicin-induced toxicity in human cardiomyocytes derived from embryonic stem cell line SA121
transcription profiling by array
Homo sapiens
51
19/12/2017
-
65
-
Transcription profiling by array of decidual CD8+ CCR7-CD45RA- Effector-Memory T cells
transcription profiling by array
Homo sapiens
16
19/12/2017
-
63
-
Methylation profiling identifies two subclasses of squamous cell carcinoma related to distinct cell types of origin
methylation profiling by array
Homo sapiens
92
19/12/2017
-
54
-
Transcriptome analysis of PE-degrading Pseudomonas aeruginosa
RNA-seq of coding RNA
Pseudomonas aeruginosa
4
19/12/2017
-
ENA
53
-
Control libraries for Arabidopsis thaliana Col-0 flower buds
DNA-seq
Arabidopsis thaliana
6
18/12/2017
-
ENA
62
-
The global effect of hypochlorite stress on the changes in the transcriptome in Staphylococcus aureus USA300
RNA-seq of coding RNA
Staphylococcus aureus subsp. aureus USA300
6
18/12/2017
-
ENA
51
-
Microarray analysis of human A549 lung cancer cells treated with brefeldin A, golgicide A, monensin or vehicle control for 8 h or 20 h
transcription profiling by array
Homo sapiens
30
18/12/2017
-
78
-
Transcription profiling of mature and developing leaves of 8 species of the genus Flaveria (F.pringlei, F.robusta, F.floridana, F.ramosissima, F.brownii, F.palmeri, F.bidentis and F.trinervia)
transcription profiling by array
Flaveria bidentis, Flaveria brownii, Flaveria floridana, Flaveria palmeri, Flaveria pringlei, Flaveria ramosissima, Flaveria robusta, Flaveria trinervia
16
18/12/2017
-
31
-
Transcription profiling by array of Ebf2-expressing bone marrow mesenchymal cells from Ebf2-GFP heterozgous and Ebf2-GFP homozygous mice
transcription profiling by array
Mus musculus
12
17/12/2017
-
43
-
RNA-Seq data: RNA-IP (TAP-ZC3H30 pull down followed by RNA-Seq) and total transcriptomics (Effect of ZC3H30 gene deletion) in procyclic form of T. brucei
RNA-seq of coding RNA
Trypanosoma brucei
12
16/12/2017
-
ENA
39
-
RNAi of XAC1 (Tb927.7.2780) in Trypanosoma brucei bloodstream forms
RNAi profiling by high throughput sequencing
Trypanosoma brucei
4
16/12/2017
-
ENA
44
-
Transcriptomic-wide shifts in diurnal gene expression from the disruption of light-dark cycle in a model cnidarian
transcription profiling by array
Nematostella vectensis
12
16/12/2017
34
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 10)
RNA-seq of coding RNA
Danio rerio
11
15/12/2017
ENA
7
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 9)
RNA-seq of coding RNA
Danio rerio
16
15/12/2017
ENA
8
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 8)
RNA-seq of coding RNA
Danio rerio
10
15/12/2017
ENA
7
-
Analysis of Cas9/sgRNA mutagenic activity at a variety of loci in zebrafish (Run 7)
DNA-seq
Danio rerio
16
15/12/2017
ENA
8
-
RNA-seq of human myoblasts isolated from Duchenne muscular dystrophy (DMD) and histologically normal muscle biopsies with or without overexpression of he Polycomb group geneBMI1
RNA-seq of coding RNA
Homo sapiens
96
15/12/2017
ENA
55
-
Transcriptional profiling of activated CD4+ memory T cells exposed to anti-TNF and recombinant human TNF-alpha in vitro
RNA-seq of coding RNA
Homo sapiens
8
15/12/2017
ENA
69
-
Methylation profiling by array of 79 glioblastoma (GBM) patients in a validation cohort to demonstrate the performance and the robustness of an identified six-CpGs biomarker for GBM management
methylation profiling by array
Homo sapiens
79
15/12/2017
82
-
Proteomic profiling of human monocytes stimulated in vitro with Neisseria meningitidis and IL-10
proteomic profiling by array
Homo sapiens
96
15/12/2017
-
28
-
Analysis of binding of the transcriptional factor Nrf1 in mouse embryonic stem cells
ChIP-seq
Mus musculus
3
15/12/2017
-
ENA
30
-
ATAC-seq time-course of human and mouse T helper type 2 cells
ATAC-seq
Homo sapiens, Mus musculus
120
14/12/2017
-
ENA
35
-
RNA-seq of mouse pancreatic pericytes from wild-type and Tcf7l2-mutated mice
RNA-seq of coding RNA
Mus musculus
9
14/12/2017
-
ENA
125
-
Gene expression changes induced by MV130 (Bactek®) in human monocytes-derived dendritic cells
transcription profiling by array
Homo sapiens
8
14/12/2017
26
-
Oryza sativa ssp. indica Illumina lwhole-genome bisulfite sequencing used for coverage comparison next to the method plant-RRBS
Bisulfite-seq
Oryza sativa Indica Group
4
14/12/2017
-
ENA
18
-
Oryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling
Bisulfite-seq
Oryza sativa Indica Group
20
14/12/2017
-
ENA
33
-
Natural variation of gibberellin responses in Arabidopsis thaliana
RNA-seq of coding RNA
Arabidopsis thaliana
45
14/12/2017
ENA
19
-
Expression analysis of Arabidopsis seedlings 3h and 2h after transfer to sucrose
RNA-seq of coding RNA
Arabidopsis thaliana
12
14/12/2017
ENA
18
-
RNA-Seq analysis of human osteoarthritic intact cartilage following total knee replacement
RNA-seq of coding RNA
Homo sapiens
75
13/12/2017
-
ENA
66
-
Global analysis of miRNA expression profile during Mycobacterium tuberculosis infection of human primary dendritic cells
microRNA profiling by array
Homo sapiens
20
12/12/2017
97
-
Methylation array profiling of 24 Pancreatic Ductal Adenocarcinoma samples
methylation profiling by array
Homo sapiens
24
12/12/2017
-
47
-
SNP array profiling of 24 Pancreatic Ductal Adenocarcinoma samples
genotyping by array
Homo sapiens
24
12/12/2017
-
31
-
RNA sequencing of pancreatic adenocarcinoma (PDAC) xenograft samples
RNA-seq of coding RNA
Homo sapiens
30
12/12/2017
-
ENA
61
-
miRNA profiling by high-throughput sequencing of pancreatic adenocarcinoma (PDAC) xenografts
microRNA profiling by high throughput sequencing
Homo sapiens
29
12/12/2017
-
ENA
42
-
Methylation profiling by array of pancreatic adenocarcinoma (PDAC) xenografts
methylation profiling by array
Homo sapiens
30
12/12/2017
-
29
-
SNP profiling of pancreatic adenocarcinoma (PDAC) xenografts
genotyping by array
Homo sapiens
30
12/12/2017
-
131
-
Small non-coding RNAs as biomarkers of musculoskeletal ageing and osteoarthritis
RNA-seq of non coding RNA
Mus musculus
41
12/12/2017
-
ENA
38
-
CCR8 expression defines tissue-resident memory T cells in human skin
RNA-seq of coding RNA
Homo sapiens
32
11/12/2017
-
ENA
15
-
Comparison of gene expression in adult and larvae Drosophila melanogaster strains modified with tTAV-based positive feedback loop
transcription profiling by array
Drosophila melanogaster
60
11/12/2017
-
9
-
RNA-seq of Spinocerebellar Ataxia Type2 (SCA2) transgenic mouse lines and age-matched wild-type
RNA-seq of coding RNA
Mus musculus
64
09/12/2017
-
ENA
3
-
Testis transcriptome alterations in zebrafish (Danio rerio) with reduced fertility due to developmental exposure to 17α-ethinylestradiol
RNA-seq of coding RNA
Danio rerio
12
09/12/2017
ENA
65
-
Expression Profiling by array of Long Noncoding RNAs in Peripheral Blood Mononuclear Cells from Multiple Sclerosis Patients
transcription profiling by array
Homo sapiens
11
08/12/2017
-
54
-
The Ink4a/Arf locus operates as a regulator of the circadian clock modulating RAS activity
transcription profiling by array
Mus musculus
8
08/12/2017
-
38
-
Transcription profiling array of human glioblastoma cell line U87MG comparing control cells (U87RNAi) with U87shLAPTM5 knockdown cells
transcription profiling by array
Homo sapiens
6
07/12/2017
-
28
-
RNA-IP of TAP-tagged ZC3H32 in bloodstream-form Trypanosoma brucei
RNA-seq of coding RNA
Trypanosoma brucei
6
07/12/2017
-
ENA
43
-
Transcription profiling by array of dermal and epidermal cells isolated from scar tissues of patients with keloid disease
transcription profiling by array
Homo sapiens
40
07/12/2017
57
-
ChIP-seq analysis of mouse T helper type 2 cells stimulated with CD3/28 and IL-4
ChIP-seq
Mus musculus
14
06/12/2017
-
ENA
54
-
Role of CCR2+ myeloid cells in pancreatic beta cell growth and regeneration
transcription profiling by array
Mus musculus
6
06/12/2017
61
-
Elucidation of the mechanism behind the potentiating activity of baicalin against Burkholderia cepacia complex biofilms
RNA-seq of coding RNA
Burkholderia cenocepacia
12
04/12/2017
-
ENA
86
-
Basal mRNA expression levels of single-cell derived FaDu clones with cisplatin-sensitive / resistant phenotype
transcription profiling by array
Homo sapiens
8
04/12/2017
-
56
-
Genomic profiling of the FaDu cell line and derived subclones using amplicon-based targeted sequencing
genotyping by high throughput sequencing
Homo sapiens
6
04/12/2017
-
ENA
51
-
RNA-seq to investigate miRNA expression in blood of East Sicilian sufferers of Klinefelter’s syndrome compared to healthy control donors
RNA-seq of non coding RNA
Homo sapiens
20
02/12/2017
-
ENA
108
-
Transcription profiling by array of wheat after inoculation with Puccinia triticina, Puccinia hordei or mock-inoculation to identify candidate genes for nonhost resistance against rust disease
transcription profiling by array
Triticum aestivum
36
02/12/2017
-
82
-
Transcription profiling by array of barley after inoculation with Puccinia hordei, Puccinia triticina or mock-inoculation to identify candidate genes for nonhost resistance against rust disease
transcription profiling by array
Hordeum vulgare
36
02/12/2017
-
53
-
Transcription profiling by array of wheat after inoculation with an adapted and a non-adapted Magnaporthe isolate or mock-inoculation to identify candidate genes for nonhost resistance against blast disease
transcription profiling by array
Triticum aestivum
36
02/12/2017
-
63
-
Transcription profiling by array of barley after inoculation with an adapted and a non-adapted Magnaporthe isolate or mock-inoculation to identify candidate genes for nonhost resistance against blast disease
transcription profiling by array
Hordeum vulgare
36
02/12/2017
-
51
-
Time-series RNA-seq experiment performed on nine melanoma cell lines treated with BRAF inhibitor vemurafenib
RNA-seq of coding RNA
Homo sapiens
33
02/12/2017
-
ENA
93
-
Transcription profiling by microarray of mouse B16F10 cells transduced with cDNAs encoding eGFP control, p19Arf, murine interferon-beta (IF-B) or the combination of p19Arf plus IF-B to study the modulated genes
transcription profiling by array
Mus musculus
12
02/12/2017
-
72
-
Whole transcriptomic analysis of mouse ATDC5 chondrocyte precursor cells under 25 MPa hydrostatic pressure for 0, 1 , 4 or 24h
transcription profiling by array
Mus musculus
8
02/12/2017
56
-
Using mitoribosomal profiling to investigate human mitochondrial translation
RNA-seq of coding RNA
Homo sapiens
5
01/12/2017
-
ENA
69
-
RNAseq of mouse presomitic mesoderm segments along the anteroposterior embryo axis
RNA-seq of coding RNA
Mus musculus
31
01/12/2017
ENA
43
-
Single-cell RNAseq of whole B6 mouse E8.25 embryos
RNA-seq of coding RNA from single cells
Mus musculus
456
01/12/2017
-
117
-
Whole genome transcriptional analysis of Alzheimer's disease patients compared with age-matched non-demented controls
transcription profiling by array
Homo sapiens
35
01/12/2017
143
-
Transcription profiling by array of effect of Copanlisib in Relapsed or Refractory Indolent Lymphoma patients
transcription profiling by array
Homo sapiens
78
01/12/2017
65
-
RNA-seq in a patient with idiopathic X-linked intellectual disability compared to healthy controls with normal mir222 expression
RNA-seq of coding RNA
Homo sapiens
4
01/12/2017
-
ENA
49
-
SNP arrays to confirm X-linkage in a family with idiopathic intellectual disability
genotyping by array
Homo sapiens
16
01/12/2017
-
33
-
ChIP-seq of Mediator subunits in Mediator mutants and wild type yeast
ChIP-seq
Saccharomyces cerevisiae
13
01/12/2017
-
ENA
55
-
Single-cell RNAseq of whole mouse E8.25 embryos
RNA-seq of coding RNA from single cells
Mus musculus
6
01/12/2017
-
105
-
Molecular subtyping of breast cancer by transcription profiling
transcription profiling by array
Homo sapiens
522
01/12/2017
-
153
-
ChIP-seq of the multiple antibiotic resistance repressor (MarR) protein of Enterotoxigenic Escherichia coli strain H10407
ChIP-seq
Escherichia coli
4
01/12/2017
-
ENA
35
-
Microarray analyses of microRNA expressions in comparison with immortal healthy mammary epithelial cells, breast cancer cells, and long-term-cultured breast cancer stem cells
microRNA profiling by array
Homo sapiens
10
01/12/2017
51
-
Transcription profiling of small heterodimer partner deficiency (SHP) knockout mice heart
transcription profiling by array
Mus musculus
12
01/12/2017
-
21
-
IMPC (international mouse phenotyping consortium) high throughput RNA seq of 1143 samples from 106 IMPC knockout lines
RNA-seq of coding RNA
Mus musculus
1143
01/12/2017
-
ENA
49
-
RNA-Seq of wild type yeast and several knockout strains in different chemically defined media
RNA-seq of coding RNA
Saccharomyces cerevisiae
23
01/12/2017
-
ENA
35
-
Opbp ChIP-seq in Drosophila melanogaster embryos
RNA-seq of coding RNA
Drosophila melanogaster
3
01/12/2017
-
ENA
15
-
WG-DASL expression profiling of formalin-fixed paraffin embedded primary breast tumours and matched lymph node metastases across four clinically relevant metastatic groups
transcription profiling by array
Homo sapiens
694
01/12/2017
42
-
Identifying crossover locations in Arabidopsis thaliana recq4a recq4b and HEI10 recq4a recq4b Col x Ler F2 populations using genotyping by sequencing
genotyping by high throughput sequencing
Arabidopsis thaliana
384
30/11/2017
-
ENA
29
-
Transcription profiling of bovine mammary epithelial cells stimulated with Mycoplasma bovis against untreated controls
transcription profiling by array
Bos taurus
6
30/11/2017
23
-
Defining the molecular properties of the repairing epithelium during DSS induced colitis
transcription profiling by array
Mus musculus
6
30/11/2017
-
28
-
Defining the effect of extracellular matrix on cellular identity in mouse intestinal epithelial cells
transcription profiling by array
Mus musculus
6
30/11/2017
-
34
-
Expression analysis of foetal and adult intestinal epithelial cells cultured in vitro
transcription profiling by array
Mus musculus
6
30/11/2017
-
24
-
RNA-seq of fetal urinary bladder and lung tissue
RNA-seq of coding RNA
Homo sapiens
8
30/11/2017
-
, ENA
33
-
Differentiation of the human gonad: temporal expression of key genes in fetal ovary and testis
transcription profiling by array
Homo sapiens
46
29/11/2017
-
69
-
Carboxypeptidase E transmits its anti-migratory function in glioma cells via transcriptional regulation of cell architecture and motility regulating factors
transcription profiling by array
Homo sapiens
6
29/11/2017
-
49
-
Carboxypeptidase E transmits its anti-migratory function in glioma cells via transcriptional regulation of cell architecture and motility regulating factors
transcription profiling by array
Homo sapiens
6
29/11/2017
-
34
-
RNA-Seq of Drosophlia adult mid-gut with the induction of RNAi against the largest subunit of RNA polymerase III
RNA-seq of coding RNA
Drosophila melanogaster
6
29/11/2017
-
ENA
81
-
The expression profiles of 30 transcription factors in 17 inducible gain-of-function lines after activation of overexpression, including 5 time points
transcription profiling by array
Arabidopsis thaliana
380
28/11/2017
37
-
The expression profiles of 31 transcription factors in wild-type Col-0 plants upon mild osmotic stress, including 10 time points and different leaf tissues
transcription profiling by array
Arabidopsis thaliana
96
28/11/2017
47
-
Microarrays of mouse embryonic limb skeletal muscle at days E14.5 and E18.5 lacking the RYR1 or Cav1.1 Ca2+ channels
transcription profiling by array
Mus musculus
36
24/11/2017
-
100
-
RNA-seq of epiblast from mouse embryos at E4.5, E4.75 and E5.0
RNA-seq of coding RNA
Mus musculus
12
24/11/2017
ENA
129
-
Wild-type Lister 427 Bloodstream-form polysome profiles with ZC3H32 knock-down
RNA-seq of coding RNA
Trypanosoma brucei
18
24/11/2017
-
ENA
41
-
Identification of heterogeneous senescence-associated transcriptional programs
RNA-seq of coding RNA
Homo sapiens
78
22/11/2017
-
ENA
156
-
Microarray analysis of resting Nkrp1g+ NK cells versus resting Nkrp1g- NK cells from spleens of female BALB/c mice
transcription profiling by array
Mus musculus
6
21/11/2017
96
-
ChIPseq of Myocyte Enhancer Factor 2 in neonatal rat cardiomyocytes to distinguish MEF2 binding sites
ChIP-seq
Rattus norvegicus
4
21/11/2017
ENA
78
-
Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains
RNA-seq of coding RNA
Saccharomyces cerevisiae
64
21/11/2017
ENA
75
-
Single cell RNA-Seq of the murine non-myocyte cardiac cellulome
RNA-seq of coding RNA from single cells
Mus musculus
2
21/11/2017
-
72
-
RNA-seq of hypoxic and normoxic soybean roots (cultivars: Embrapa 45 and BR 4)
RNA-seq of coding RNA
Glycine max
12
21/11/2017
ENA
81
-
Diurnal gills transcriptome of the oyster Crassostrea gigas fed with non-harmful and harmful algae
RNA-seq of coding RNA
Crassostrea gigas
52
20/11/2017
-
ENA
85
-
Transcription profiling of primary monocytes in human donors suffering from rheumatoid arthritis compared to healthy controls
transcription profiling by array
Homo sapiens
5
19/11/2017
-
83
-
Hypoxia and Intrinsic Transcriptomic Subtyping of Soft Tissue Sarcoma
RNA-seq of coding RNA
Homo sapiens
40
17/11/2017
-
ENA
115
-
Single-cell RNA-Seq data of zebrafish blood cells
RNA-seq of coding RNA from single cells
Danio rerio
2015
17/11/2017
-
ENA
142
-
RNAseq analysis of microaerobic and aerobic cultures of Pseudomonas extremaustrali
RNA-seq of coding RNA
Pseudomonas extremaustralis
4
17/11/2017
-
ENA
88
-
Mating system manipulation and the evolution of sex-biased gene expression in Drosophila
RNA-seq of coding RNA
Drosophila pseudoobscura bogotana
96
17/11/2017
-
ENA
68
-
Transcription profiling by array of genetically engineered murine hepatoma Hepa8F5 cells with eight doxycylcline-inducible liver-enriched transcription factors to study transcription response under induced high liver function
transcription profiling by array
Mus musculus
5
15/11/2017
-
89
-
RNA-Seq analysis of Arabidopsis heterozygous mutant of gene (AT1G31870), which encodes a pre-mRNA-splicing factor of RES complex protein against the wild type (Col)
RNA-seq of coding RNA
Arabidopsis thaliana
4
11/11/2017
-
ENA
100
-
Transcriptome analysis of myeloid cells (neutrophils, macrophages and dendritic cells) isolated from the spinal cord of mice with experimental autoimmune encephalomyelitis (EAE)
transcription profiling by array
Mus musculus
8
10/11/2017
109
-
Terminus DNA loss in the Escherichia coli
DNA-seq
Escherichia coli str. K-12 substr. MG1655
15
10/11/2017
ENA
103
-
Transcriptional profiling of Th1, Th2, Th9, and Th17 T cell clones
RNA-seq of coding RNA
Homo sapiens
67
10/11/2017
-
ENA
176
-
Transcriptomic characterization of the human cell cycle in individual unsynchronized cells
RNA-seq of coding RNA from single cells
Homo sapiens
96
09/11/2017
ENA
218
-
Population transcriptomics in Daphnia galeata
RNA-seq of coding RNA
Daphnia galeata galeata
72
08/11/2017
-
ENA
102
-
RNA-seq of mouse alveolar macrophages sorted from CD11cCre/+ Tgfbr2fl/fl and control Tgfbr2fl/fl neonatal mice
RNA-seq of coding RNA
Mus musculus
8
08/11/2017
ENA
146
-
Transcription profiling by RNA-seq of murine hearts at different developmental stages and adult mice with ischemia/reperfusion injury
RNA-seq of coding RNA
Mus musculus
18
08/11/2017
-
ENA
111
-
DNA-seq of ELMSeq reporter cassette
DNA-seq
Mycoplasma pneumoniae
18
08/11/2017
-
ENA
79
-
Transcription profiling by high throughput sequencing of mouse embryonic stem cells following Trim24 and/or p53 knockdown
RNA-seq of coding RNA
Mus musculus
11
08/11/2017
-
ENA
435
-
Transcriptome regulating differentiation from the early human embryonic distal foregut
RNA-seq of coding RNA
Homo sapiens
6
07/11/2017
-
189
-
Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (RNE)
transcription profiling by array
Rattus norvegicus
48
03/11/2017
152
-
Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (Lung)
transcription profiling by array
Rattus norvegicus
48
03/11/2017
109
-
Toxicity of Toxicity of the main electronic cigarette components, propylene glycol, glycerin and nicotine in Sprague Dawley rats in a 90-day OECD inhalation study complemented with molecular endpoints (Liver)
transcription profiling by array
Rattus norvegicus
32
03/11/2017
117
-
RNA-seq time course analysis of human and mouse T helper type 2 and type 0 cells
RNA-seq of coding RNA
Homo sapiens, Mus musculus
685
02/11/2017
-
ENA
14
-
RNA sequencing of T helper cell type 2 with CRISPR-mediated gene knockouts
RNA-seq of coding RNA
Mus musculus
576
02/11/2017
-
ENA
10
-
Transcription profiling by array of blood mononuclear cells of human volunteers subjected to heat stress
transcription profiling by array
Homo sapiens
45
01/11/2017
72
-
Determination by ChIP-chip of the binding sites of the developmental transcription regulator BldC in the genome of Streptomyces venezuelae ATCC 10712
ChIP-chip by array
Streptomyces venezuelae
4
01/11/2017
109
-
Microarray evaluation of in vitro cultured Sox9+ mouse lung progenitors isolated from E12.5 embryonic lung progenitors
transcription profiling by array
Mus musculus
11
01/11/2017
-
117
-
RNA-seq of in vitro cultured Sox9+ mouse lung progenitors cells from E12.5 embryos compared to freshly isolated cells and control adult lung epithelial cells
RNA-seq of coding RNA
Mus musculus
80
01/11/2017
-
ENA
153
-
Expression differences between zebrafish embryos lacking b3glct and wildtype sibs
transcription profiling by array
Danio rerio
12
01/11/2017
95
-
Transcription profiling by array of differential gene expression in chicken primary B cells infected ex vivo with attenuated and very virulent strains of infectious bursal disease virus (IBDV)
transcription profiling by array
Gallus gallus
9
01/11/2017
116
-
RNA-seq of pooled Arabidopsis thaliana inflorescences of miRNA function related HWS overexpressors, mutants and transgenic lines
RNA-seq of coding RNA
Arabidopsis thaliana
12
01/11/2017
-
ENA
122
-
RNA-seq of human colorectal cancer cell line COLO320DM treated with the secretome of irradiated or control cancer-associated fibroblasts for 6 or 48 hours
RNA-seq of coding RNA
Homo sapiens
96
01/11/2017
-
ENA
291
-
ChIP-Seq of the Streptomyces venezuelae regulator BldD and its D116A mutant
ChIP-seq
Streptomyces venezuelae
4
01/11/2017
ENA
90
-
Gene expression comparison of olfactory neurosphere-derived cells, fibroblasts and induced pluripotent stem cells derived from the same schizophrenic donors
transcription profiling by array
Homo sapiens
30
01/11/2017
-
159
-
RNASeq profiling of AZD8186-treated HCC70 xenografts
RNA-seq of coding RNA
Homo sapiens
6
01/11/2017
ENA
255
-
RNAseq of human Ewing, MSC, fibroblast cell lines - A side population of Ewing cells exhibits stem cell properties
RNA-seq of coding RNA
Homo sapiens
22
31/10/2017
ENA
197
-
DNA-seq of multiple myeloma patient with chromothripsis 18 and rapid progression into extramedullary relapse
DNA-seq
Homo sapiens
1
31/10/2017
ENA
120
-
Comparative genomic hybridization by array of multiple myeloma patient with rapid extramedullary relapse and chromothripsis 18
comparative genomic hybridization by array
Homo sapiens
1
31/10/2017
-
118
-
RNA-seq of coding RNA from human purified intestinal epithelial samples and organoids derived from paediatric gut, feotal gut and induced pluripotent stem cells
RNA-seq of coding RNA
Homo sapiens
50
31/10/2017
-
ENA
208
-
DNA methylation array of human purified intestinal epithelial samples and organoids from paediatric and foetal small and large intestine
methylation profiling by array
Homo sapiens
134
31/10/2017
-
207
-
Transcription profiling by array to investigate interferon gene expression changes in Macaca fascicularis upon infection with Simian immunodeficiency virus
transcription profiling by array
Macaca fascicularis
54
30/10/2017
-
89
-
Gene expression in cells encapsulated within different types of alginate microcapsules
transcription profiling by array
Mus musculus
7
30/10/2017
-
62
-
Microarray gene expression analysis for Escherichia coli O157:H7 (EHEC) and its luxS-deficient mutant strain in osmotic stress condition
transcription profiling by array
Escherichia coli O157:H7 str. EDL933
4
30/10/2017
-
107
-
Cortical transcriptome of female mice treated with vehicle or estrogen and subjected to hypoxia
RNA-seq of coding RNA
Mus musculus
8
30/10/2017
-
ENA
87
-
microRNA response of Galleria mellonella to Listeria monocytogenes infection: a powerful method to predict protein function in mammals exemplified by the autophagy adaptor optineurin
transcription profiling by array
Galleria mellonella, Galleria mellonella and Listeria monocytogenes
6
30/10/2017
64
-
Genome-wide identification of urinary cell-free microRNAs for non-invasive detection of bladder cancer
microRNA profiling by array
Homo sapiens
31
29/10/2017
-
211
-
RNA-sequencing of human cervical cancer HeLa cells treated with splicing inhibitors Sudemycin C1, Sudemycin K, Spliceostatin A or control DMSO
RNA-seq of coding RNA
Homo sapiens
24
29/10/2017
-
ENA
179
-
MicroRNA array profiling on human pluripotent stem cell-derived cardiomyocytes exposed to doxorubicin
microRNA profiling by array
Homo sapiens
51
28/10/2017
140
-
RNA-Sequencing of wild type and UCP1-null beige adipose tissue
RNA-seq of coding RNA
Mus musculus
12
28/10/2017
-
ENA
198
-
B1 C57BL6 wild type versus B1 IL-10 Knockout
transcription profiling by array
Mus musculus
6
28/10/2017
175
-
RNA-seq of the thermophilic biomass-degrading fungus Malbranchea cinnamomea FCH 10.5 when grown on glucose, wheat bran and beechwood xylan
RNA-seq of coding RNA
Malbranchea cinnamomea
30
27/10/2017
-
ENA
141
-
Transcription profiling by array of Streptomyces coelicolor A3(2) M145 vs a ∆sco2127 mutant in modified R5 media
transcription profiling by array
Streptomyces coelicolor A3(2)
4
27/10/2017
97
-
An application of a systems toxicology approach using a human organotypic small airway cultures for a comparative assessment between a candidate modified-risk tobacco product aerosol and cigarette smoke (mRNA data)
transcription profiling by array
Homo sapiens
214
26/10/2017
179
-
An application of a systems toxicology approach using a human organotypic small airway cultures for a comparative assessment between a candidate modified-risk tobacco product aerosol and cigarette smoke
microRNA profiling by array
Homo sapiens
215
26/10/2017
172
-
An RNASeq normal tissue atlas for mouse and rat
RNA-seq of coding RNA
Mus musculus, Rattus norvegicus
77
25/10/2017
ENA
484
-
Global gene expression analysis of OsmiRNA156 over expression switchgrass lines
transcription profiling by array
Panicum virgatum
20
25/10/2017
-
103
-
Gene expression profile of murine Bone marrow derived Dendritic cells stimulated with CD40L in absence or presence of Neural Precursor cell- conditioned medium
transcription profiling by array
Mus musculus
18
25/10/2017
94
-
A novel TetR-like transcriptional regulator is induced in acid-nitrosative stress and controls expression of an efflux pump in mycobacteria
transcription profiling by array
Mycobacterium smegmatis
8
24/10/2017
-
97
-
Transcription profiling by array of liver from diploid and triploid Atlantic salmon fed with marine or vegetable-based diet during early development
transcription profiling by array
Salmo salar
24
24/10/2017
-
154
-
High-throughput RNA sequencing of six ant transcriptomes
RNA-seq of coding RNA
Formica fusca, Lasius flavus, Lasius neglectus, Lasius niger, Myrmica scabrinodis
6
24/10/2017
-
ENA
102
-
Epigenomic changes associated with TGF-beta induced EMT in MDCK cells
ChIP-seq
Canis lupus familiaris
8
23/10/2017
ENA
113
-