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AccessionTitleTypeOrganismAssaysReleasedProcessedRawViewsAtlas
RNA-sequencing of human induced pluripotent stem cell-derived intestinal epithelial organoids
RNA-seq of coding RNA
Homo sapiens
4
Today
-
ENA
-
-
Regional CNS immune fingerprint in chronic peripheral inflammation
RNA-seq of coding RNA
Mus musculus
34
Today
-
ENA
-
-
DNA- and RNA-seq to study the impact of 5-formylcytosine on nucleosome organization and gene expression in embryonic mouse tissues and stem cells
MNase-seq, ChIP-seq, DNA-seq, RNA-seq of coding RNA
Mus musculus, synthetic construct
150
Today
-
ENA
-
-
RNA-seq of the human breast cancer ERα-suppressed MCF-7(MCF-7/SP10+) cells and of their internal control MCF-7 (MCF-7/C) cells
RNA-seq of coding RNA
Homo sapiens
6
Today
-
ENA
-
-
Transcription profiling of Populus x canescens developing and mature xylem under short-days and drought stress treatment
RNA-seq of coding RNA
Populus tremula x Populus alba
32
Yesterday
-
ENA
-
-
DNA methylation of longitudinal samples from The Swedish Adoption/Twin Study of Aging (SATSA)
methylation profiling by array
Homo sapiens
2144
20/10/2018
-
-
-
Microarray analysis comparing zebrafish insulin knockout mutants to non homozygous controls
transcription profiling by array
Danio rerio
2
20/10/2018
-
-
-
Transcription profiling by array to identify Sex-Specific Transcriptome Responses to Polychlorinated Biphenyls (PCBs)
transcription profiling by array
Homo sapiens
232
20/10/2018
-
-
Whole-exome sequencing of genomic DNA extracted from patient-derived melanoma cell lines resistant to vemurafenib (PLX) or trametinib (TRA)
DNA-seq
Homo sapiens
7
20/10/2018
ENA
-
-
Transcription profiling by array of HPV16-positive OPSCC samples from human donors
transcription profiling by array
Homo sapiens
33
20/10/2018
-
-
Human primary adipose-derived stem cells (hpASC) differentiated to white adipocytes stimulated with norepinephrine 3h
RNA-seq of coding RNA
Homo sapiens
8
20/10/2018
-
ENA
2
-
Differential regulation of SGK1 by progesterone activates AP-1/NDRG1 genomic axis in PR-positive and negative breast cancer cells
transcription profiling by array
Homo sapiens
18
19/10/2018
15
-
Ribo-Seq transcriptomic analysis of human RD cells infected with enterovirus strains EV7, EV71, and PV1
RNA-seq of coding RNA
Homo sapiens
12
19/10/2018
-
ENA
-
-
ChIP-seq for H3K27ac and H3K27me3 histone marks in B lymphoblasts derived from control donors or patients with loss of function mutations in TTC7A
ChIP-seq
Homo sapiens
18
19/10/2018
-
ENA
-
-
ChIP-seq for TTC7A binding to chromatin in B lymphoblasts derived from control donors
ChIP-seq
Homo sapiens
3
19/10/2018
-
ENA
-
-
Eight in situ Hi-C experiments of mouse OG2 stem cells for 7 different starting material and that were digested by either HindIII (2 samples) or MboI (6 samples) restriction enzymes. Plus two peripheral blood mononuclear cells (PBMCs) samples obtained either from a blood extraction of a healthy donor or from a lymph node biopsy from a DLBCL patient
Hi-C
Homo sapiens, Mus musculus
16
19/10/2018
ENA
132
-
Periosteum contains skeletal stem cells with high bone regenerative potential controlled by Periostin
transcription profiling by array
Mus musculus
16
18/10/2018
-
6
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - whole genome sequencing
genotyping by high throughput sequencing
Homo sapiens
54
17/10/2018
-
ENA
15
-
Exploiting cellular heterogeneity through single cell sequencing reveals HDAC4 as a regulator of cellular phenotypes in Parkinson’s dopamine neurons
RNA-seq of coding RNA from single cells
Homo sapiens
568
17/10/2018
-
ENA
15
-
ChIP-seq of Pbx1, Prep1 and Sp2 in WT MEFs, Sp2ko MEFs and in Sp2ko MEFs ectopically expressing Flag-tagged full length Sp2; and ChIPexo of Sp2 in WT and Sp2ko MEFs
ChIP-seq
Mus musculus
9
17/10/2018
-
ENA
20
-
Transcription profiling of Spunta WT and SP6Aox leaves under warm temperatures
transcription profiling by array
Solanum tuberosum
12
17/10/2018
-
17
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - Smartseq 2 data
RNA-seq of coding RNA
Homo sapiens
7597
17/10/2018
ENA
42
-
Transcription profiling by array of Andigena SP5G RNAi leaves, tubers and tuber sprouts
transcription profiling by array
Solanum tuberosum
16
17/10/2018
-
21
-
mRNA expression changes in chicken livers associated with field exposure to DDTs in KwaZulu-Natal, South Africa
transcription profiling by array
Gallus gallus
2
16/10/2018
16
-
Structural and non-structural genes contribute to the genetic diversity of RNA viruses
RNA-seq of coding RNA
Yellow fever virus
16
16/10/2018
-
ENA
20
-
ChIP-seq of neuroblastoma IMR-32, CLB-GA, NGP, IMR-5/75, GI-M-EN, CHP-212, and IMR-5 cell lines to identify TBX2, MYCN, H3K27ac, H3K4me1 and H3K4me3 binding sites
ChIP-seq
Homo sapiens
66
16/10/2018
ENA
69
-
RNA-seq of estrogen (E2) induced changes of mRNA expression in Sus scrofa male and female blastocysts derived from embryonic day 10
RNA-seq of coding RNA
Sus scrofa
36
16/10/2018
ENA
24
-
RNA-seq of estrogen (E2) induced changes of mRNA expression in early pregnant Sus scrofa endometrium
RNA-seq of coding RNA
Sus scrofa
16
16/10/2018
ENA
22
-
mRNAseq of Drosophila S2 cells after knockdown of EJC components
RNA-seq of coding RNA
Drosophila melanogaster
9
15/10/2018
-
ENA
36
-
Transcriptional profiling of autophagy proficient and compromised cell lines, determined by expression levels of Atg5
transcription profiling by array
Mus musculus
6
15/10/2018
-
38
-
DNA-seq of Sus scrofa psoas major muscle tissue to investigate functional dissection of QTL-region affecting fat-deposition
DNA-seq
Sus scrofa
32
15/10/2018
ENA
204
-
PRPF8 iCLIP on HeLa cells in response to eIF4A3 Knockdown
CLIP-seq
Homo sapiens
8
14/10/2018
-
ENA
32
-
Chip-seq to identify HrdB regulated genes in Streptomyces coelicolor
ChIP-seq
Streptomyces coelicolor A3(2)
5
14/10/2018
-
ENA
39
-
Nus factors prevent premature transcription termination of bacterial CRISPR arrays
ChIP-seq
Salmonella enterica subsp. enterica serovar Typhimurium
28
13/10/2018
-
ENA
43
-
RNA-seq analysis of HeLa cells treated with GapmeR antisense oligonucleotides
RNA-seq of coding RNA
Homo sapiens
2
12/10/2018
-
ENA
30
-
Genome-wide ChIP seq analysis of Aspergillus nidulans reveals deregulation of fungal nitrogen metabolism triggered by Streptomyces rapamycinicus
ChIP-seq
Aspergillus nidulans
19
12/10/2018
ENA
33
-
RNA-seq for identifying toxin MazF and MqsR cleavage sites in toxin expression and subsequent recovery cultures of Escherichia coli (mRNA and ncRNA excluding rRNA)
RNA-seq of coding RNA
Escherichia coli K-12
10
11/10/2018
ENA
52
-
Gene expression assessed by microarrays in smoothhead sculpin, sailfin sculpin and Pacific Staghorn sculpin exposed to hypoxia over time
transcription profiling by array
Artedius lateralis, Leptocottus armatus, Nautichthys oculofasciatus
98
11/10/2018
-
28
-
A simple and robust plate-based single-cell ATAC-seq on various tissues and cell lines
ATAC-seq
Homo sapiens, Mus musculus, mixed sample
7104
10/10/2018
-
ENA
58
-
RNA-seq of muscle from pigs divergent in feed efficiency and product quality
RNA-seq of coding RNA
Sus scrofa
20
10/10/2018
-
ENA
31
-
RNA-Seq study of lipid regulation in Aphis gossypii parasitized by Lysiphlebia japonica
RNA-seq of coding RNA
Aphis gossypii
6
10/10/2018
-
ENA
37
-
RNA-Seq study of 3-days larva and pupa in Lysiphlebia japonica
RNA-seq of coding RNA
Lysiphlebia japonica
6
10/10/2018
-
ENA
45
-
Bulk RNA-Seq of whole testis sampled from juvenile mice
RNA-seq of coding RNA
Mus musculus
90
09/10/2018
ENA
46
-
Whole-genome sequencing of the 5T and 5T33 murine models for multiple myeloma
DNA-seq
Mus musculus
7
09/10/2018
-
ENA
43
-
Whole-exome sequencing of the 5T and 5T33 murine models for multiple myeloma
DNA-seq
Mus musculus
7
09/10/2018
-
ENA
24
-
RNA-seq of 5 populations from the regenerative region of the brain of young and old mice
RNA-seq of coding RNA
Mus musculus
40
08/10/2018
-
ENA
54
-
Global transcriptional response of a Bordetella bronchiseptica Bvg- phase-locked mutant (delta_bvgS) after exposure to blood
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
40
-
Global transcriptional response of Bordetella bronchiseptica after exposure to serum
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
30
-
Global transcriptional response of Bordetella bronchiseptica after exposure to blood
transcription profiling by array
Bordetella bronchiseptica
3
07/10/2018
37
-
Time course ChIP-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection
ChIP-seq
Homo sapiens
10
07/10/2018
-
ENA
43
-
Time course GRO-seq analysis of the human GM12878 lymphoblasts upon Sendai Virus infection
GRO-seq
Homo sapiens
12
07/10/2018
-
ENA
48
-
Pro-osteogenic trophic effects by PKA activation in human mesenchymal stromal cells
transcription profiling by array
Homo sapiens
12
06/10/2018
44
-
A calcium-induced signaling cascade leading to osteogenic differentiation of human bone marrow-derived mesenchymal stromal cells
transcription profiling by array
Homo sapiens
6
06/10/2018
44
-
Overexpression of spliced XBP1 in in vitro Th2 cells, and comparison to 4u8c treatment
RNA-seq of coding RNA
Mus musculus
30
06/10/2018
-
ENA
33
-
The IRE1a-XBP1 pathway promotes T helper cell differentiation by resolving secretory stress and accelerating proliferation (ChIP-seq)
ChIP-seq
Mus musculus
8
06/10/2018
-
ENA
43
-
Single cell sequencing of 43,168 cells during the differentiation from human induced pluripotent stem cells to cardiomyocytes
RNA-seq of coding RNA from single cells
Homo sapiens
10
06/10/2018
-
50
-
Transcription profiling by array of MG-63 cells grown on different biomaterials used in bone grafts
transcription profiling by array
Homo sapiens
69
05/10/2018
27
-
RNA-seq of group 1 Innate Lymphoid Cells (ILCs) in the mouse uterus and liver
RNA-seq of coding RNA
Mus musculus
13
05/10/2018
-
ENA
27
-
Predicting the therapeutic efficacy of MSC in bone tissue engineering using the molecular marker CADM1
transcription profiling by array
Homo sapiens
72
04/10/2018
28
-
A small molecule approach to engineering vascularized tissue
transcription profiling by array
Homo sapiens
23
04/10/2018
30
-
Zygotic expression after parental early life stress
RNA-seq of coding RNA
Mus musculus
16
03/10/2018
-
ENA
42
-
4-cell embryonic expression after zygotic injection with fragmented sperm long RNA of mice exposed to early life stress
RNA-seq of coding RNA
Mus musculus
8
03/10/2018
-
ENA
40
-
Transcription profiling by array of rat microglial cells grown in C6 glioma cell conditioned media compared to untreated controls at 6, 24 and 48 hours
transcription profiling by array
Rattus norvegicus
12
03/10/2018
-
28
-
Total RNA-seq of Black6/C57 adult mouse sperm including either exposed to early life stress or control conditions
RNA-seq of coding RNA
Mus musculus
11
03/10/2018
-
ENA
33
-
H3K27ac ChIP-Seq of pancreatic islets derived from mice fed a long-term high-fat diet (HFD) against chow-fed controls
ChIP-seq
Mus musculus
2
02/10/2018
ENA
38
-
RNA-Seq of pancreatic islets derived from mice fed a long-term high-fat diet against chow-fed controls
RNA-seq of coding RNA
Mus musculus
2
02/10/2018
ENA
47
-
Reconstructing the human first trimester fetal-maternal interface using single cell transcriptomics - 10x data
RNA-seq of coding RNA
Homo sapiens
35
02/10/2018
ENA
38
-
Transcription profiling by array of palate from mouse embryos expressing activated Smoothened to study the role of Shh signalling during secondary palate development
transcription profiling by array
Mus musculus
6
02/10/2018
25
-
A Transcript and Metabolite Atlas of Blackcurrant Fruit Development Highlights Hormonal Regulation and Reveals the Role of Key Transcription Factors
transcription profiling by array
Ribes nigrum
18
01/10/2018
-
29
-
RNA-sequencing of the mRNA transcriptome in blood, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
RNA-seq of coding RNA
Homo sapiens
30
01/10/2018
ENA
28
-
Transcription profiling by array of pre-cancerous lesions and tumours formed by subcutaneous injection of mtDNA depleted (rho0) 4T1 cells into BALB/c mice recovered at different time points
transcription profiling by array
Mus musculus
24
01/10/2018
-
40
-
Single-cell ATAC-seq of a mixture of three oesophageal tissue (HET1A, OE33, OE19) derived cell lines
ATAC-seq
Homo sapiens
192
01/10/2018
-
ENA
34
-
Response of several cell lines originated from liver, skin and colon to stimulation by IFNg, hyper-IL6, IL27 and OSM, investigated at mRNA level
transcription profiling by array
Homo sapiens
86
01/10/2018
-
33
-
RNA-seq of Streptococcus equi strains with and without csrRS SNPs
RNA-seq of coding RNA
Streptococcus equi
33
01/10/2018
-
ENA
22
-
Mycobacterial tuberculosis infection in hypoxia-inducible factor-1alpha deficient macrophages
transcription profiling by array
Mus musculus
2
30/09/2018
-
28
-
RNA-seq of med14-3 and uvh6-3 mutants in heat stress (37°C) and control stress (23°C), with WT controls. RNA-seq of double mutants: med14-3 or uvh6-3 combined with either ddm1-2 or mom1-2 mutants. Bisulfite-seq of WT samples subjected to control or heat stress. Bisulfite-seq of med14-3 and WT samples in control stress
RNA-seq of coding RNA
Arabidopsis thaliana
22
30/09/2018
-
ENA
29
-
RNA-seq analysis of Coprinopsis cinerea mycelium challenged with gram negative and gram positive bacteria
RNA-seq of coding RNA
Coprinopsis cinerea
9
30/09/2018
ENA
27
-
BRAFV600E FRO cells treated with BRAF inhibitor (vemurafenib) for 4, 15, 24 h
transcription profiling by array
Homo sapiens
12
30/09/2018
61
-
In vivo cleavage rules and target repertoire of RNase III in Escherichia coli
RNA-seq of coding RNA, RNA-seq of non coding RNA
Escherichia coli str. K-12 substr. MG1655
37
30/09/2018
-
ENA
31
-
Single-cell RNA-seq of mouse embryonic stem cells to study the genomic encoding of transcriptional burst kinetics
RNA-seq of coding RNA from single cells
Mus musculus
609
30/09/2018
ENA
43
-
Transcription profiling by array to investigate effect of repeated cigarette exposure on three-dimensional human bronchial epithelial cultures
transcription profiling by array
Homo sapiens
12
30/09/2018
-
56
-
RNA-Seq of neuroblastoma Th-MYCN mouse model, samples sensitive to chemotherapy, and those with chemotherapy resistance
RNA-seq of coding RNA
Mus musculus
9
30/09/2018
-
ENA
49
-
Transcription profiling by array of Anopheles gambiae: Tiassale following Met knockdown by RNA interference
transcription profiling by array
Anopheles gambiae
5
30/09/2018
-
28
-
miRNA profiling of sarcoidosis Treg cells
microRNA profiling by array
Homo sapiens
27
29/09/2018
-
18
-
RNA seq experiment of Treg cells isolated from peripheral blood of patients with pulmonary sarcoidosis compared to Treg cells from peripheral blood of healthy individuals
RNA-seq of coding RNA
Homo sapiens
12
29/09/2018
-
ENA
23
-
The effect of cold and hydrogen peroxide in wheat
transcription profiling by array
Triticum aestivum
24
28/09/2018
-
51
-
High resolution SNP-Array analysis in a Chronic lymphocytic leukemia (CLL) patient
genotyping by array
Homo sapiens
1
28/09/2018
-
60
-
Whole exome sequencing and transcription profiling of a patient cohort of oral cavity squamous cell carcinomas
DNA-seq, RNA-seq of coding RNA
Homo sapiens
86
28/09/2018
-
ENA
121
-
Single-cell RNA-seq profiling of Drosphila melanogaster Rbf mutant third intsar eye discs
RNA-seq of coding RNA from single cells
Drosophila melanogaster
10
27/09/2018
ENA
40
-
Dietary cholesterol promotes fatty liver-associated liver cancer by inducing aberrant genomic expression and mutations
transcription profiling by array
Mus musculus
8
27/09/2018
-
66
-
ChIP-Seq mapping of histone modifications at multiple DNA Double Strand Breaks
ChIP-seq
Homo sapiens
51
27/09/2018
-
ENA
38
-
Investigation of titanium coated imprinted polystyrene surfaces
transcription profiling by array
Homo sapiens
24
25/09/2018
48
-
NGS data from ‘Treatment of a metabolic liver disease by in vivo genome base editing in adult mice’
genotyping by high throughput sequencing
Homo sapiens, Mus musculus
165
25/09/2018
ENA
72
-
The diurnal transcriptional landscape of the microalga Tetradesmus obliquus
RNA-seq of coding RNA
Tetradesmus obliquus
73
24/09/2018
-
ENA
50
-
RNA-sequencing of the mRNA transcriptome in lesional and non-lesional skin, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
RNA-seq of coding RNA
Homo sapiens
59
21/09/2018
ENA
57
-
RNA-sequencing of the small-RNA transcriptome in blood, across three time-points in severe psoriasis patients treated with the tumor necrosis factor (TNF) inhibitor, etanercept
microRNA profiling by high throughput sequencing
Homo sapiens
30
21/09/2018
-
ENA
49
-
Surface topography enhances differentiation of mesenchymal stem cells towards osteogenic and adipogenic lineages
transcription profiling by array
Homo sapiens
9
20/09/2018
44
-
RNA-seq of Chenopodium quinoa salt glands compared to whole leaves with or without salt glands
RNA-seq of coding RNA
Chenopodium quinoa
12
20/09/2018
-
ENA
55
-
Differential gene expression study in brain samples from patients suffering distinct frontotemporal lobar degeneration (FTLD) conditions
transcription profiling by array
Homo sapiens
30
19/09/2018
-
63
-
Bulk segregant analysis of 3D growth defective mutant in Physcomitrella patens (Vx501)
DNA-seq
Physcomitrella patens
4
19/09/2018
-
ENA
46
-