E-TABM-145 - Transcription profiling of human cell lines and tissues - Luscombe re-analysis of GNF/Novartis data

Status
Released on 23 February 2008, last updated on 2 May 2014
Organism
Homo sapiens
Samples (158)
Array (1)
Protocols (5)
Description
The expression data utilized in this analysis derives from the raw data published by Su et al. 2004 (also known as GNF/Novartis dataset or E-AFMX-5 in ArrayExpress, GSE1133 and GDS596 in GEO). The data contains 79 different human tissues and cell types with 2 replicates per tissue/cell type. The data reprocessed using GCRMA and PANP packages from Bioconductor.
Experiment types
 co-expression, organism part comparison, replicate, software variation, transcription profiling by array
Contacts
Citations
A census of human transcription factors: function, expression and evolution. Vaquerizas JM, Kummerfeld SK, Teichmann SA, Luscombe NM.
Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq. Tallack MR, Magor GW, Dartigues B, Sun L, Huang S, Fittock JM, Fry SV, Glazov EA, Bailey TL, Perkins AC. :2385-2398 (2012), Europe PMC 22835905
MIAME
PlatformsProtocolsVariablesProcessedRaw
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