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E-MTAB-9910 - Studying changes in chromatin accessibility in A549 cells by ATAC-seq directly after 20-hour glucocorticoid treatment and following a 24-hour hormone washout

Status
Last updated on 14 December 2020, released on 3 May 2021
Organism
Homo sapiens
Samples (6)
Protocols (8)
Description
We performed ATAC-seq in the A549 cell line. Cells were treated with dexamethasone (100 nM), hydrocortisone (100 nM) or vehicle (ethanol) for 20 hours and either harvested immediately or washed 2x with PBS and subsequently cultured in hormone-free medium for 24 hours before harvest.
Experiment types
ATAC-seq, compound treatment design
Contacts
Citation
Glucocorticoid receptor activation induces gene-specific transcriptional memory and universally reversible changes in chromatin accessibility. Melissa Bothe, René Buschow, Sebastiaan H. Meijsing.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Links