E-MTAB-8014 - ChIP-seq analyses of CTCF binding in liver samples from CAST/EiJ and SPRET/EiJ (Mus spretus) mice, and of the cohesin subunit RAD21 in C57BL/6J mouse liver

Status
Last updated on 20 November 2019, released on 20 November 2019
Organism
Mus musculus castaneus, Mus musculus domesticus, Mus spretus
Samples (9)
Protocols (10)
Description
We explored the relationship between the evolutionary dynamics of CTCF binding and the functional stability of higher order genome structures, by performing ChIP-seq experiments in closely related Mus species or strains and intersecting with Hi-C-derived topologically associating domains (TADs) and expression data. All experiments were performed in adult male liver samples in 3 biological replicates and with an input control set. We also generated RAD21 (cohesin subunit) ChIP-seq from a replicate of adult male mouse (C57BL/6J) liver to determine localization of cohesin with respect to CTCF.
Experiment types
ChIP-seq, binding site identification design
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-8014.idf.txt
Sample and data relationshipE-MTAB-8014.sdrf.txt
Processed data (11)Click to browse processed data
Links