E-MTAB-7820 - RNA-seq in Raji cells with inducible BZLF1 prior to and after induction of EBV's lytic cycle by doxycycline

Status
Submitted on 12 December 2014, released on 1 January 2019, last updated on 17 September 2020
Organism
Homo sapiens
Samples (18)
Protocols (7)
Description
(i) RNA transcripts of Raji iBZLF1 cells (https://www.biorxiv.org/content/10.1101/573659v1) were compared between non-induced cells and cells induced with doxycycline (100 ng/ ml) for 6 h. Human (Hg19) as well as viral (EBV, Raji KF717093.1) transcripts were analyzed. Artificial ERCC Spike-ins (Thermo Scientific) were added to selected samples to control for global changes of RNA levels. (ii) For control purposes, the RNA transcripts in Raji cells equipped with a doxycycline-controlled truncated BZLF1 allele lacking its transactivation domain (Raji iBZLF1 AD-truncated) were prior to and after induction for 6 h. (iii) For another control, the RNA transcripts of parental, unmodified Raji cells were analyzed prior to and after doxycycline induction for 6 h. All experiments were performed as triplicates.
Experiment types
RNA-seq of total RNA, stimulus or stress design
Contacts
Citation
Epstein-Barr virus inactivates the transcriptome and disrupts the chromatin architecture of its host cell in the first phase of lytic reactivation. Alexander Buschle, Paulina Mrozek-Gorska, Stefan Krebs, Helmut Blum, Filippo M. Cernilogar, Gunnar Schotta, Dagmar Pich, Tobias Straub,Wolfgang Hammerschmidt.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-7820.idf.txt
Sample and data relationshipE-MTAB-7820.sdrf.txt
Processed data (30)Click to browse processed data
Links