E-MTAB-7420 - CLIP-seq analysis of C.elegans MINA-1::GFP transgenic animals

Status
Submitted on 10 November 2010, last updated on 8 February 2019, released on 8 February 2019
Organism
Caenorhabditis elegans
Samples (4)
Protocols (6)
Description
Analysis to determine which mRNAs are specifically associated with MINA-1 protein.
Experiment types
CLIP-seq, binding site identification design
Contacts
Citation
MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans. S. Sendoel, D. Subasic, L. Ducoli, M. Keller, E. Michel, I. Kohler, K. Singh, X. Zheng, A. Brümmer, J. Imig, S. Kishore, A. Kanitz, A. Kaech, N. Mittal, Y. Wu, A. M. Matia-González, A. P. Gerber, M. Zavolan, R. Aebersold, J. Hall, F. H.-T. Allain, M.O. Hengartner.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-7420.idf.txt
Sample and data relationshipE-MTAB-7420.sdrf.txt
Links