E-MTAB-7272 - RNAseq of C. elegans cultured on metformin sensitive and resistant E. coli strains with and without 50mM metformin treatment

Status
Submitted on 1 June 2016, last updated on 13 July 2019, released on 13 July 2019
Organism
Caenorhabditis elegans
Samples (16)
Protocols (5)
Description
Metformin is the therapy of choice for treating type 2 diabetes and is currently repurposed for a wide range of diseases including aging. Recent evidence implicates the gut microbiota as a site of metformin action. Combining two tractable genetic models, the bacterium E. coli and the nematode C. elegans, we performed C. elegans RNAseq to investigate the role of the metformin sensitive OP50 and metformin resistant OP50-MR E. coli microbiota in the drug effects on the host. Our data suggest an evolutionarily conserved bacterial mediation of metformin effects on host lipid metabolism and lifespan.
Experiment types
RNA-seq of coding RNA, compound treatment design, growth condition design
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-7272.idf.txt
Sample and data relationshipE-MTAB-7272.sdrf.txt
Processed data (1)E-MTAB-7272.processed.1.zip
Links