E-MTAB-7080 - RNA-seq of blood from donors with connective tissue diseases in the Lupus Extended Phenotype Cohort

Status
Submitted on 15 February 2018, last updated on 5 June 2019, released on 5 June 2019
Organism
Homo sapiens
Samples (12)
Protocols (4)
Description
The connective tissue diseases (CTDs) are group of inflammatory disorders with overlapping clinical and serological manifestations. We have undertaken Lupus Extended Phenotype (LEAP) study in of a cohort of adult patients with CTDs, namely systemic lupus erythematosus, Sjogren's syndrome, mixed and undifferentiated CTD, limited and diffuse cutaneous systemic sclerosis and dermatomyositis. RNAseq was undertaken in 12 participants from 4 ‘cohorts’ based on interferon stimulated gene and autoantibodies analyses: 3 ISG positive and anti-Smith positive participants; 3 ISG positive and anti-Smith negative participants; 3 ISG negative and anti-Smith positive participants and 3 ISG negative and anti-Smith negative participants.
Experiment types
RNA-seq of coding RNA, case control design
Contact
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-7080.idf.txt
Sample and data relationshipE-MTAB-7080.sdrf.txt
Links