E-MTAB-6948 - Microarray of four types of mouse immune samples including those of the spleen (SP), bone marrow (BM), lymph node (LN), and peripheral blood mononuclear cell (PBMC) and three tumor tissues including MC38, EL4 and LLC

Status
Last updated on 25 June 2018, released on 30 June 2018
Organism
Mus musculus
Samples (21)
Array (1)
Protocols (5)
Description
We performed MIcroarray experiments on a total of 12 immune organs, including spleen (SP), bone marrow (BM), lymph node (LN) and Peripheral blood mononuclear cell (PBMC) and three tumor tissues including MC38, EL4 and LLC. 12 mice from four immune organs, including the spleen (SP), bone marrow (BM), lymph nodes (LN), and Peripheral blood mononuclear cell (PBMC), were isolated using routine experimental methods.9 mice were randomly divided into 3 groups and implanted subcutaneously(s.c.) with EL4 (2.0*10^5 /mice), MC-38 (1.0*10^6 /mice), and LLC-JSP-t2 (2.0*10^5 /mice) cells, respectively. All mice were sacrificed and tumor tissues were collected when the tumor volume reached 100 mm 3 . The tissues were ground up with liquid nitrogen and the lysates were stocked using Trizol for subsequent array analysis. RNA isolation and hybridization were performed by Capitalbio Technology Corporation according to the standard Affymetrix protocol .
Experiment types
transcription profiling by array, cell type comparison design
Contact
Citation
Inference of immune cell composition on the expression profiles of mouse tissue. Ziyi Chen, Anfei Huang, Jiya Sun, Taijiao Jiang, F. Xiao-Feng Qin & Aiping Wu.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-6948.idf.txt
Sample and data relationshipE-MTAB-6948.sdrf.txt
Raw data (1)E-MTAB-6948.raw.1.zip
Array designA-AFFY-45.adf.txt
Links