E-MTAB-6711 - Microarray experiment on M. incognita infected and uninfected material in A.thaliana Col-0 plants and A. thaliana ERF6 mutated plants

Status
Submitted on 30 July 2015, last updated on 9 January 2019, released on 10 January 2019
Organism
Arabidopsis thaliana
Samples (21)
Array (1)
Protocols (8)
Description
In this experiment we investigate the transcription profile of M. inocognita infection at the start of the infection and 7 days later in A. thalinana Col-0 plants. This was compared to M. incognita infected material of the plant line erf6-1, a T-DNA insertion mutant in ERF6. The data showed the role of ERF6 during early M. incognita infection in Arabidaaaaaaaaaaopsis besides more insight in the transcription regulated by M. incognita in Col-0 the wildtype plant. Samples are taken from whole root systems of 14 (0 days after infection) or 21 (7 days after infection) day old plants.
Experiment types
transcription profiling by array, genotype design, pathogenicity design, time series design
Contact
Citation
Tolerance to abiotic stress mediated by ERF6 co-regulates susceptibility of Arabidopsis thaliana to Meloidogyne incognita. Sonja Warmerdam, Mark G. Sterken, Casper van Schaik, Marian E. P. Oortwijn, Jose L. Lozano-Torres, Jaap Bakker, Aska Goverse, Geert Smant. :137-152 (2019)
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-6711.idf.txt
Sample and data relationshipE-MTAB-6711.sdrf.txt
Raw data (2)E-MTAB-6711.raw.1.zip, E-MTAB-6711.raw.2.zip
Array designA-MEXP-1711.adf.txt
Links