E-MTAB-6352 - RNA-seq of Staphylococcus aureus and Staphylococcus aureus challenged with squalene compared to control growth

Status
Submitted on 30 September 2016, last updated on 6 March 2018, released on 30 June 2018
Organism
Staphylococcus aureus, Staphylococcus epidermidis
Samples (12)
Protocols (5)
Description
Squalene makes up 12 % of human skin surface lipids, however little is known about its affects on the host skin microbiome. Here we tested the effect of squalene on genetic regulation of staphylococci, showing that it profoundly affects expression virulence or colonisation determinants, and of iron uptake systems.
Experiment types
RNA-seq of coding RNA, compound treatment design, growth condition design, strain or line design
Contacts
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-6352.idf.txt
Sample and data relationshipE-MTAB-6352.sdrf.txt
Processed data (1)E-MTAB-6352.processed.1.zip
Links