E-MTAB-605 - Transcription profiling by array of potatoes grown organically or conventionally

Status
Released on 31 December 2011, last updated on 3 May 2014
Organism
Solanum tuberosum
Samples (16)
Array (1)
Protocols (7)
Description
Microarray analysis was performed on a well-defined set of potato tuber samples grown under different, well-recorded environmental conditions. The data were analysed to assess the potential of transcriptomics to detect differences in gene expression as a result of these environmental conditions. Differences were found for both factors, both in PCA and in ANOVA analysis.
Experiment types
transcription profiling by array, co-expression, growth condition, replicate
Contact
Citation
The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. van Dijk JP, Cankar K, Hendriksen PJ, Beenen HG, Zhu M, Scheffer S, Shepherd LV, Stewart D, Davies HV, Leifert C, Wilkockson SJ, Gruden K, Kok EJ.
MIAME
PlatformsProtocolsVariablesProcessedRaw
Files
Investigation descriptionE-MTAB-605.idf.txt
Sample and data relationshipE-MTAB-605.sdrf.txt
Raw data (1)E-MTAB-605.raw.1.zip
Processed data (1)E-MTAB-605.processed.1.zip
Array designA-MEXP-2021.adf.txt