E-MTAB-587 - ChIP-Seq of Arabidopsis wildtype inflorescences using an antibody raised against a C-terminal peptide of SEP3

Status
Released on 27 April 2011, last updated on 4 March 2014
Organism
Arabidopsis thaliana
Samples (3)
Protocols (4)
Description
WARNING: This library was yield low amount of material and it was over-amplified by PCR. This libraries are used study the robustness of several statitical methods against PCR artifacts. ChIP experiments were performed on Arabidopsis wildtype inflorescences using an antibody raised against a C-terminal peptide of SEP3. Soap files are in the archive E-MTAB-587.additional.zip
Experiment types
ChIP-seq, ChiP-seq, development or differentiation, in vivo
Contact
Citation
ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions. Muiño JM, Kaufmann K, van Ham RC, Angenent GC, Krajewski P. Plant Methods 7:11 (2011), PMID:21554688
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-587.idf.txt
Sample and data relationshipE-MTAB-587.sdrf.txt
Links