E-MTAB-5728 - Single-cell RNAseq of whole mouse E8.25 embryos

Status
Submitted on 28 March 2017, released on 1 December 2017, last updated on 17 January 2018
Organism
Mus musculus
Samples (6)
Protocols (5)
Description
Gastrulation represents a pivotal point in mammalian development, when the basic body plan is established and cells are specified into one of the three germ layers. This is followed by rapid diversification into specific lineages and the appearance of the various cell types required to build each of the organs. The rich variety of cell types present at this stage has never been rigorously characterised in any mammalian organism, and thus insight into cell fate decisions and the underlying regulatory networks have been inaccessible. We have used droplet based single-cell RNA-sequencing to address this by profiling ~7000 cells from three E8.25 mouse embryos.
Experiment types
RNA-seq of coding RNA from single cells, cell type comparison design
Contacts
Citation
Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation. Ibarra-Soria X, Jawaid W, Pijuan-Sala B, Ladopoulos V, Scialdone A, Jorg DJ, Tyser RCV, Calero-Nieto FJ, Mulas C, Nichols J, Vallier L, Srinivas S, Simons BD, Gottgens B, Marioni JC.  (2018), PMID:29311656
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-5728.idf.txt
Sample and data relationshipE-MTAB-5728.sdrf.txt
Processed data (2)E-MTAB-5728.processed.1.zip, E-MTAB-5728.processed.2.zip
Additional data (1)E-MTAB-5728.additional.1.zip
Links