E-MTAB-530 - CLIP-Seq of human brain and neuroblastoma sample to characterisethe RNA targets and position-dependent splicing regulation by TDP-43

Status
Released on 21 July 2011, last updated on 3 May 2014
Organism
Homo sapiens
Samples (14)
Protocols (3)
Description
iCLIP (UV-crosslinking and immunoprecipitation followed by sequencing ) analysis of TDP-43 RNA binding sites
Experiment types
CLIP-seq, binding site identification, high throughput sequencing
Contacts
Citation
Characterising the RNA targets and position-dependent splicing regulation by TDP-43; implications for neurodegenerative diseases. James R. Tollervey, Toma_ Curk, Boris Rogelj, Michael Briese, Matteo Cereda, Melis Kayikci, Tibor Hortobágyi, Agnes L. Nishimura, Vera _upunski, Rickie Patani, Siddharthan Chandran, Gregor Rot, Bla_ Zupan, Christopher E. Shaw, Jernej Ule.
MINSEQE
Exp. designProtocolsVariablesProcessedSeq. reads
Files
Investigation descriptionE-MTAB-530.idf.txt
Sample and data relationshipE-MTAB-530.sdrf.txt
Links